def init(self, n_in, n_out):
Network.init_common(self, n_in, n_out)
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
block0 = LayerBlockGaussianNoise()
# Layer 1
n_neurons_1 = 200
block1 = LayerBlockFullyConnected(neuron_relu, self.n_in, n_neurons_1)
# Layer 2
n_neurons_2 = 200
block2 = LayerBlockFullyConnected(neuron_relu, n_neurons_1,
n_neurons_2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_neurons_2, self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers(
[block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, n_centroids, n_out):
Network.init_common(self, patch_width**2 + n_centroids, n_out)
self.patch_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width ** 2
self.ls_layers.append(LayerDivideFeatures([0, interval, self.n_in]))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
block1 = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 + 1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 + 1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 + 1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 + 1) / pool_size_width1
n_in2 = n_kern1 * filter_map_height2 * filter_map_with2 + n_centroids
n_out2 = 1000
block2 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block2]))
# Layer 5
n_out3 = 1000
block2 = LayerBlockFullyConnected(neuron_relu, n_in=n_out2, n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block2]))
# Layer 6
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out3, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block3]))
self.update_params()
def init(self, patch_height, patch_width, n_out):
Network.init_common(self, patch_height * patch_width, n_out)
self.in_height = patch_height
self.in_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_height, patch_width),
flt_shape=(n_kern0, 1, kernel_height0,
kernel_width0),
poolsize=(pool_size_height0,
pool_size_width0))
# Layer 1
filter_map_height1 = (patch_height - kernel_height0 +
1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 +
1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block1 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
# Layer 2
filter_map_height2 = (filter_map_height1 - kernel_height1 +
1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 +
1) / pool_size_width1
n_in2 = n_kern1 * filter_map_height2 * filter_map_with2
n_out2 = 500
block2 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out2,
n_out=self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers(
[block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, n_out):
Network.init_common(self, 6 * patch_width**2, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width**2
self.ls_layers.append(
LayerDivideFeatures(range(0, 6 * interval + 1, interval)))
# Layer 1
n_out_1_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2,
n_out_1_1)
n_out_1_2 = 1000
block1 = LayerBlockFullyConnected(neuron_relu, patch_width**2,
n_out_1_1)
self.ls_layers.append(
LayerOfBlocks([block0, block0, block0, block1, block1, block1]))
# Layer 2
n_out_2_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
n_out_2_2 = 1000
block3 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block4 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block5 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
self.ls_layers.append(
LayerOfBlocks([block0, block1, block2, block3, block4, block5]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2_1 * 3 + n_out_2_2 * 3
n_out2 = 4000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out2,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, n_out):
Network.init_common(self, patch_width**3, n_out)
self.patch_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
filter_map_0_shape = np.array([patch_width, patch_width, patch_width],
dtype=int)
filter_0_shape = np.array([2, 2, 2], dtype=int)
pool_0_shape = np.array([2, 2, 2], dtype=int)
n_kern0 = 20
block0 = LayerBlockConvPool3D(neuron_relu,
1,
tuple(filter_map_0_shape),
n_kern0,
tuple(filter_0_shape),
poolsize=tuple(pool_0_shape))
# Layer 1
filter_map_1_shape = (filter_map_0_shape - filter_0_shape +
1) / pool_0_shape
filter_1_shape = np.array([2, 2, 2], dtype=int)
pool_1_shape = np.array([2, 2, 2], dtype=int)
n_kern1 = 50
block1 = LayerBlockConvPool3D(neuron_relu,
n_kern0,
tuple(filter_map_1_shape),
n_kern1,
tuple(filter_1_shape),
poolsize=tuple(pool_1_shape))
# Layer 2
filter_map_2_shape = (filter_map_1_shape - filter_1_shape +
1) / pool_1_shape
n_in2 = n_kern1 * np.prod(filter_map_2_shape)
n_out2 = 1000
block2 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out2,
n_out=self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers(
[block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, priors, n_out):
Network.init_common(self, self.n_patches * patch_width**2, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width**2
self.ls_layers.append(
LayerDivideFeatures(range(0, self.n_in + 1, interval)))
# Layer 1
n_out_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1)
self.ls_layers.append(LayerOfBlocks([block0] * 3))
# Layer 2
n_out_2 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
self.ls_layers.append(LayerOfBlocks([block0, block1, block2]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2 * self.n_patches
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out2,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
self.ls_layers.append(LayerOfBlocks([LayerBlockMultiplication(priors)
]))
# Layer 7
self.ls_layers.append(LayerOfBlocks([LayerBlockNormalization()]))
self.update_params()
def init(self, patch_width, n_out):
Network.init_common(self, 6 * patch_width**2, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width ** 2
self.ls_layers.append(LayerDivideFeatures(range(0, 6*interval+1, interval)))
# Layer 1
n_out_1_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1_1)
n_out_1_2 = 1000
block1 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1_1)
self.ls_layers.append(LayerOfBlocks([block0, block0, block0, block1, block1, block1]))
# Layer 2
n_out_2_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
n_out_2_2 = 1000
block3 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block4 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block5 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
self.ls_layers.append(LayerOfBlocks([block0, block1, block2, block3, block4, block5]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2_1 * 3 + n_out_2_2 * 3
n_out2 = 4000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out2, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_height, patch_width, n_out):
Network.init_common(self, patch_height*patch_width, n_out)
self.in_height = patch_height
self.in_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_height, patch_width),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
# Layer 1
filter_map_height1 = (patch_height - kernel_height0 + 1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 + 1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
# Layer 2
filter_map_height2 = (filter_map_height1 - kernel_height1 + 1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 + 1) / pool_size_width1
n_in2 = n_kern1 * filter_map_height2 * filter_map_with2
n_out2 = 500
block2 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out2, n_out=self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers([block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, priors, n_out):
Network.init_common(self, self.n_patches * patch_width**2, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width ** 2
self.ls_layers.append(LayerDivideFeatures(range(0, self.n_in + 1, interval)))
# Layer 1
n_out_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1)
self.ls_layers.append(LayerOfBlocks([block0]*3))
# Layer 2
n_out_2 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1, n_out_2)
self.ls_layers.append(LayerOfBlocks([block0, block1, block2]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2 * self.n_patches
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out2, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
self.ls_layers.append(LayerOfBlocks([LayerBlockMultiplication(priors)]))
# Layer 7
self.ls_layers.append(LayerOfBlocks([LayerBlockNormalization()]))
self.update_params()
def init(self, patch_width, n_out):
Network.init_common(self, patch_width**3, n_out)
self.patch_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
filter_map_0_shape = np.array([patch_width, patch_width, patch_width], dtype=int)
filter_0_shape = np.array([2, 2, 2], dtype=int)
pool_0_shape = np.array([2, 2, 2], dtype=int)
n_kern0 = 20
block0 = LayerBlockConvPool3D(neuron_relu,
1, tuple(filter_map_0_shape),
n_kern0, tuple(filter_0_shape),
poolsize=tuple(pool_0_shape))
# Layer 1
filter_map_1_shape = (filter_map_0_shape - filter_0_shape + 1) / pool_0_shape
filter_1_shape = np.array([2, 2, 2], dtype=int)
pool_1_shape = np.array([2, 2, 2], dtype=int)
n_kern1 = 50
block1 = LayerBlockConvPool3D(neuron_relu,
n_kern0, tuple(filter_map_1_shape),
n_kern1, tuple(filter_1_shape),
poolsize=tuple(pool_1_shape))
# Layer 2
filter_map_2_shape = (filter_map_1_shape - filter_1_shape + 1) / pool_1_shape
n_in2 = n_kern1 * np.prod(filter_map_2_shape)
n_out2 = 1000
block2 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out2, n_out=self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers([block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, n_in, n_out):
Network.init_common(self, n_in, n_out)
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
block0 = LayerBlockGaussianNoise()
# Layer 1
n_neurons_1 = 200
block1 = LayerBlockFullyConnected(neuron_relu, self.n_in, n_neurons_1)
# Layer 2
n_neurons_2 = 200
block2 = LayerBlockFullyConnected(neuron_relu, n_neurons_1, n_neurons_2)
# Layer 3
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_neurons_2, self.n_out)
self.ls_layers = convert_blocks_into_feed_forward_layers([block0, block1, block2, block3])
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def __init__(self):
Network.__init__(self)
def init(self, patch_width, patch_width_comp, patch_width_3d, n_centroids,
n_out):
Network.init_common(
self, 3 * patch_width**2 + 3 * patch_width_comp**2 +
patch_width_3d**3 + n_centroids, n_out)
self.patch_width = patch_width
self.patch_width_3d = patch_width_3d
self.n_centroids = n_centroids
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
splits = [0] + [patch_width**2] * 3 + [patch_width_comp**2] * 3 + [
self.patch_width_3d**3
] + [n_centroids]
self.ls_layers.append(LayerDivideFeatures(np.cumsum(splits)))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0,
kernel_width0),
poolsize=(pool_size_height0,
pool_size_width0))
block1 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(1, patch_width_comp, patch_width_comp),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
n_out_1_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, patch_width_3d**3,
n_out_1_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(
LayerOfBlocks([
block0, block0, block0, block1, block1, block1, block_3d,
block_centroids
]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 +
1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 +
1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block2 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
filter_map_height1_comp = (patch_width_comp - kernel_height0 +
1) / pool_size_height0
filter_map_width1_comp = (patch_width_comp - kernel_width0 +
1) / pool_size_width0
block3 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp,
filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block4 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp,
filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block5 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp,
filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
n_out_2_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, n_out_1_3, n_out_2_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(
LayerOfBlocks([
block0, block1, block2, block3, block4, block5, block_3d,
block_centroids
]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 +
1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 +
1) / pool_size_width1
filter_map_height2_comp = (filter_map_height1_comp - kernel_height1 +
1) / pool_size_height1
filter_map_with2_comp = (filter_map_width1_comp - kernel_width1 +
1) / pool_size_width1
n_in2 = 3 * n_kern1 * filter_map_height2 * filter_map_with2 + \
3 * n_kern1 * filter_map_height2_comp * filter_map_with2_comp + n_out_2_3 + n_centroids
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
n_out3 = 3000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_out2,
n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out3,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def __init__(self):
Network.__init__(self)
self.patch_width = None
self.patch_width_3d = None
self.n_centroids = None
def __init__(self):
Network.__init__(self)
def __init__(self):
Network.__init__(self)
self.patch_width = None
self.in_height = None
def init(self, patch_width, n_out):
Network.init_common(self, 6 * patch_width * patch_width, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width**2
self.ls_layers.append(
LayerDivideFeatures(range(0, self.n_in + interval, interval)))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0,
kernel_width0),
poolsize=(pool_size_height0,
pool_size_width0))
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0,
kernel_width0),
poolsize=(pool_size_height0,
pool_size_width0))
self.ls_layers.append(
LayerOfBlocks([block0, block0, block0, block1, block1, block1]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 +
1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 +
1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block2 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block3 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block4 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block5 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
self.ls_layers.append(
LayerOfBlocks([block0, block1, block2, block3, block4, block5]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 +
1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 +
1) / pool_size_width1
n_in2 = 6 * n_kern1 * filter_map_height2 * filter_map_with2
n_out2 = 4000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out2,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def __init__(self):
Network.__init__(self)
self.patch_width = None
self.in_height = None
def init(self, patch_width, n_out):
Network.init_common(self, 6 * patch_width*patch_width, n_out)
self.patch_width = patch_width
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width ** 2
self.ls_layers.append(LayerDivideFeatures(range(0, self.n_in + interval, interval)))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
self.ls_layers.append(LayerOfBlocks([block0, block0, block0, block1, block1, block1]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 + 1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 + 1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block2 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block3 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block4 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block5 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
self.ls_layers.append(LayerOfBlocks([block0, block1, block2, block3, block4, block5]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 + 1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 + 1) / pool_size_width1
n_in2 = 6 * n_kern1 * filter_map_height2 * filter_map_with2
n_out2 = 4000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out2, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, patch_width_3d, n_centroids, n_out):
Network.init_common(
self, 6 * patch_width**2 + patch_width_3d**3 + n_centroids, n_out)
self.patch_width = patch_width
self.patch_width_3d = patch_width_3d
self.n_centroids = n_centroids
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width**2
self.ls_layers.append(
LayerDivideFeatures(
range(0, 6 * interval + 1, interval) +
[6 * interval + self.patch_width_3d**3] + [self.n_in]))
# Layer 1
n_out_1_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2,
n_out_1_1)
n_out_1_2 = 1000
block1 = LayerBlockFullyConnected(neuron_relu, patch_width**2,
n_out_1_1)
n_out_1_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, patch_width_3d**3,
n_out_1_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(
LayerOfBlocks([
block0, block0, block0, block1, block1, block1, block_3d,
block_centroids
]))
# Layer 2
n_out_2_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
n_out_2_2 = 1000
block3 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block4 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block5 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
n_out_2_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, n_out_1_3, n_out_2_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(
LayerOfBlocks([
block0, block1, block2, block3, block4, block5, block_3d,
block_centroids
]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2_1 * 3 + n_out_2_2 * 3 + n_out_2_3 + n_centroids
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
n_out3 = 3000
block0 = LayerBlockFullyConnected(neuron_relu,
n_in=n_out2,
n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out3,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, patch_width_3d, n_centroids, n_out):
Network.init_common(self, 6 * patch_width**2 + patch_width_3d**3 + n_centroids, n_out)
self.patch_width = patch_width
self.patch_width_3d = patch_width_3d
self.n_centroids = n_centroids
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width ** 2
self.ls_layers.append(LayerDivideFeatures(range(0, 6*interval+1, interval)
+ [6*interval + self.patch_width_3d**3]
+ [self.n_in]))
# Layer 1
n_out_1_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1_1)
n_out_1_2 = 1000
block1 = LayerBlockFullyConnected(neuron_relu, patch_width**2, n_out_1_1)
n_out_1_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, patch_width_3d**3, n_out_1_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block0, block0, block1, block1, block1, block_3d, block_centroids]))
# Layer 2
n_out_2_1 = 1000
block0 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block1 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
block2 = LayerBlockFullyConnected(neuron_relu, n_out_1_1, n_out_2_1)
n_out_2_2 = 1000
block3 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block4 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
block5 = LayerBlockFullyConnected(neuron_relu, n_out_1_2, n_out_2_2)
n_out_2_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, n_out_1_3, n_out_2_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1, block2, block3, block4, block5, block_3d, block_centroids]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
n_in2 = n_out_2_1 * 3 + n_out_2_2 * 3 + n_out_2_3 + n_centroids
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
n_out3 = 3000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_out2, n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out3, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def init(self, patch_width, n_centroids, n_out):
Network.init_common(self, patch_width**2 + n_centroids, n_out)
self.patch_width = patch_width
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
interval = patch_width**2
self.ls_layers.append(LayerDivideFeatures([0, interval, self.n_in]))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0,
kernel_width0),
poolsize=(pool_size_height0,
pool_size_width0))
block1 = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 +
1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 +
1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(
neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 +
1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 +
1) / pool_size_width1
n_in2 = n_kern1 * filter_map_height2 * filter_map_with2 + n_centroids
n_out2 = 1000
block2 = LayerBlockFullyConnected(neuron_relu,
n_in=n_in2,
n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block2]))
# Layer 5
n_out3 = 1000
block2 = LayerBlockFullyConnected(neuron_relu,
n_in=n_out2,
n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block2]))
# Layer 6
block3 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(),
n_in=n_out3,
n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block3]))
self.update_params()
def __init__(self):
Network.__init__(self)
self.patch_width = None
def __init__(self):
Network.__init__(self)
self.patch_width = None
def init(self, patch_width, patch_width_comp, patch_width_3d, n_centroids, n_out):
Network.init_common(self, 3 * patch_width**2 + 3 * patch_width_comp**2 + patch_width_3d**3 + n_centroids, n_out)
self.patch_width = patch_width
self.patch_width_3d = patch_width_3d
self.n_centroids = n_centroids
self.ls_layers = []
neuron_relu = neuron_type.NeuronRELU()
# Layer 0
splits = [0] + [patch_width**2]*3 + [patch_width_comp**2]*3 + [self.patch_width_3d**3] + [n_centroids]
self.ls_layers.append(LayerDivideFeatures(np.cumsum(splits)))
# Layer 1
kernel_height0 = 5
kernel_width0 = 5
pool_size_height0 = 2
pool_size_width0 = 2
n_kern0 = 20
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width, patch_width),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(1, patch_width_comp, patch_width_comp),
flt_shape=(n_kern0, 1, kernel_height0, kernel_width0),
poolsize=(pool_size_height0, pool_size_width0))
n_out_1_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, patch_width_3d**3, n_out_1_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block0, block0, block1, block1, block1, block_3d, block_centroids]))
# Layer 2
filter_map_height1 = (patch_width - kernel_height0 + 1) / pool_size_height0
filter_map_width1 = (patch_width - kernel_width0 + 1) / pool_size_width0
kernel_height1 = 5
kernel_width1 = 5
pool_size_height1 = 2
pool_size_width1 = 2
n_kern1 = 50
block0 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block1 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block2 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1, filter_map_width1),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
filter_map_height1_comp = (patch_width_comp - kernel_height0 + 1) / pool_size_height0
filter_map_width1_comp = (patch_width_comp - kernel_width0 + 1) / pool_size_width0
block3 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp, filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block4 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp, filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
block5 = LayerBlockConvPool2D(neuron_relu,
in_shape=(n_kern0, filter_map_height1_comp, filter_map_width1_comp),
flt_shape=(n_kern1, n_kern0, kernel_height1, kernel_width1),
poolsize=(pool_size_height1, pool_size_width1))
n_out_2_3 = 1000
block_3d = LayerBlockFullyConnected(neuron_relu, n_out_1_3, n_out_2_3)
block_centroids = LayerBlockIdentity()
self.ls_layers.append(LayerOfBlocks([block0, block1, block2, block3, block4, block5, block_3d, block_centroids]))
# Layer 3
self.ls_layers.append(LayerMergeFeatures())
# Layer 4
filter_map_height2 = (filter_map_height1 - kernel_height1 + 1) / pool_size_height1
filter_map_with2 = (filter_map_width1 - kernel_width1 + 1) / pool_size_width1
filter_map_height2_comp = (filter_map_height1_comp - kernel_height1 + 1) / pool_size_height1
filter_map_with2_comp = (filter_map_width1_comp - kernel_width1 + 1) / pool_size_width1
n_in2 = 3 * n_kern1 * filter_map_height2 * filter_map_with2 + \
3 * n_kern1 * filter_map_height2_comp * filter_map_with2_comp + n_out_2_3 + n_centroids
n_out2 = 3000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_in2, n_out=n_out2)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 5
n_out3 = 3000
block0 = LayerBlockFullyConnected(neuron_relu, n_in=n_out2, n_out=n_out3)
self.ls_layers.append(LayerOfBlocks([block0]))
# Layer 6
block0 = LayerBlockFullyConnected(neuron_type.NeuronSoftmax(), n_in=n_out3, n_out=self.n_out)
self.ls_layers.append(LayerOfBlocks([block0]))
self.ls_params = []
for l in self.ls_layers:
self.ls_params += l.params
def __init__(self):
Network.__init__(self)
self.patch_width = None
self.patch_width_3d = None
self.n_centroids = None