def _graph_factory(self, with_image=False):
g = Graph(
container_dict=dict(
padding=0
))
g.new_plot(
bounds=[250, 250],
resizable='',
padding=[30, 0, 0, 30])
cx = self.cx
cy = self.cy
cbx = self.xbounds
cby = self.ybounds
tr = self.target_radius
# if with_image:
# px = self.pxpermm #px is in mm
# cbx, cby = self._get_crop_bounds()
# #g.set_axis_traits(tick_label_formatter=lambda x: '{:0.2f}'.format((x - w / 2) / px))
# #g.set_axis_traits(tick_label_formatter=lambda x: '{:0.2f}'.format((x - h / 2) / px), axis='y')
#
# bx, by = g.plots[0].bounds
# g.plots[0].x_axis.mapper = LinearMapper(high_pos=bx,
# range=DataRange1D(low_setting=self.xbounds[0],
# high_setting=self.xbounds[1]))
# g.plots[0].y_axis.mapper = LinearMapper(high_pos=by,
# range=DataRange1D(low_setting=self.ybounds[0],
# high_setting=self.ybounds[1]))
# cx += self.image_width / 2
# cy += self.image_height / 2
# tr *= px
g.set_x_limits(*cbx)
g.set_y_limits(*cby)
lp, _plot = g.new_series()
t = TargetOverlay(component=lp,
cx=cx,
cy=cy,
target_radius=tr)
lp.overlays.append(t)
overlap_overlay = OverlapOverlay(component=lp,
visible=self.show_overlap
)
lp.overlays.append(overlap_overlay)
g.new_series(type='scatter', marker='circle')
g.new_series(type='line', color='red')
return g
def _graph_factory(self):
graph = Graph(container_dict=dict(padding=5,
bgcolor='lightgray'))
graph.new_plot(
padding=[50, 5, 5, 50],
# title='{}'.format(self.title),
xtitle='CDD Operating Voltage (V)',
ytitle='Intensity (fA)',
)
graph.new_series(type='scatter',
marker='pixel')
return graph
def _graph_factory(self):
g = Graph(window_title='Coincidence Scan',
container_dict=dict(padding=5, bgcolor='lightgray')
)
g.new_plot(padding=[50, 5, 5, 50],
ytitle='Intensity (fA)',
xtitle='Operating Voltage (V)')
for di in self.spectrometer.detectors:
g.new_series(
name=di.name,
color=di.color)
return g
def _execute_power_calibration_check(self):
'''
'''
g = Graph()
g.new_plot()
g.new_series()
g.new_series(x=[0, 100], y=[0, 100], line_style='dash')
do_later(self._open_graph, graph=g)
self._stop_signal = TEvent()
callback = lambda pi, r: None
self._iterate(self.check_parameters,
g, False, callback)
def _graph_factory(self):
gc = self.graph_cnt
cnt = '' if not gc else gc
self.graph_cnt += 1
name = self.parent.name if self.parent else 'Foo'
g = Graph(window_title='{} Power Calibration {}'.format(name, cnt),
container_dict=dict(padding=5),
window_x=500 + gc * 25,
window_y=25 + gc * 25
)
g.new_plot(
xtitle='Setpoint (%)',
ytitle='Measured Power (W)')
g.new_series()
return g
def graph(poly, opoly, line):
from src.graph.graph import Graph
g = Graph()
g.new_plot()
for po in (poly, opoly):
po = np.array(po)
try:
xs, ys = po.T
except ValueError:
xs, ys, _ = po.T
xs = np.hstack((xs, xs[0]))
ys = np.hstack((ys, ys[0]))
g.new_series(xs, ys)
# for i, (p1, p2) in enumerate(lines):
# xi, yi = (p1[0], p2[0]), (p1[1], p2[1])
# g.new_series(xi, yi, color='black')
return g
def _graph_default(self):
g = Graph(container_dict=dict(padding=5,
kind='h'))
g.new_plot(xtitle='weight (mg)', ytitle='40Ar* (fA)',
padding=[60, 20, 60, 60]
# padding=60
)
g.new_series()
g.new_plot(xtitle='40Ar* (fA)', ytitle='%Error in Age',
padding=[30, 30, 60, 60]
)
g.new_series()
# fp = create_line_plot(([], []), color='red')
# left, bottom = add_default_axes(fp)
# bottom.visible = False
# left.orientation = 'right'
# left.axis_line_visible = False
# bottom.axis_line_visible = False
# left.visible = False
# if self.kind == 'weight':
# bottom.visible = True
# bottom.orientation = 'top'
# bottom.title = 'Error (ka)'
# bottom.tick_color = 'red'
# bottom.tick_label_color = 'red'
# bottom.line_color = 'red'
# bottom.title_color = 'red'
# else:
# left.title = 'Weight (mg)'
# fp.visible = False
# gd = GuideOverlay(fp, value=0.01, orientation='v')
# fp.overlays.append(gd)
# g.plots[0].add(fp)
# self.secondary_plot = fp
return g
def _finish_calibration(self):
super(FusionsCO2PowerCalibrationManager, self)._finish_calibration()
g = Graph()
g.new_plot()
# plot W vs 8bit dac
x = self.graph.get_data(axis=1)
_, y = self.graph.get_aux_data()
xf = self.graph.get_data(axis=1, series=2)
_, yf = self.graph.get_aux_data(series=3)
# print xf
# print yf
x, y = zip(*zip(x, y))
xf, yf = zip(*zip(xf, yf))
g.new_series(x, y)
g.new_series(xf, yf)
self._ipm_coeffs_w_v_r = self._regress(x, y, FITDEGREES['linear'])
self. _ipm_coeffs_w_v_r1 = self._regress(xf, yf, FITDEGREES['linear'])
self._open_graph(graph=g)
def _gc(self, p, det, kind):
g = Graph(container_dict=dict(padding=5),
window_width=1000,
window_height=800,
window_x=40,
window_y=20
)
with open(p, 'r') as fp:
# gather data
reader = csv.reader(fp)
header = reader.next()
groups = self._parse_data(reader)
'''
groups= [data,]
data shape = nrow,ncols
'''
data = groups[0]
x = data[0]
y = data[header.index(det)]
sy = smooth(y, window_len=120) # , window='flat')
x = x[::50]
y = y[::50]
sy = sy[::50]
# smooth
# plot
g.new_plot(zoom=True, xtitle='Time (s)', ytitle='{} Baseline Intensity (fA)'.format(det))
g.new_series(x, y, type=kind, marker='dot', marker_size=2)
g.new_series(x, sy, line_width=2)
# g.set_x_limits(500, 500 + 60 * 30)
# g.edit_traits()
return g
if use_convex_hull:
poly = convex_hull(poly)
xs, ys = poly.T
cx, cy = xs.mean(), ys.mean()
P = poly.T
xs = np.hstack((xs, xs[0]))
ys = np.hstack((ys, ys[0]))
else:
xs, ys = poly.T
xs = np.hstack((xs, xs[0]))
ys = np.hstack((ys, ys[0]))
cx, cy = xs.mean(), ys.mean()
# plot original
g.new_series(xs, ys)
g.set_x_limits(min(xs), max(xs), pad='0.1')
g.set_y_limits(min(ys), max(ys), pad='0.1')
for ps in npoints:
for i in range(0, len(ps), 2):
p1, p2 = ps[i], ps[i + 1]
g.new_series((p1[0], p2[0]),
(p1[1], p2[1]), color='black')
# plot offset polygon
# poly = sort_clockwise(poly, poly)
opoly = polygon_offset(poly, -500)
if use_convex_hull:
opoly = convex_hull(opoly)
xs, ys, _ = opoly.T
x = range(1, 6)
ratios1 = []
errs1 = []
for i in KEYS:
m1, e1 = d._calculate_mean_ratio(nshots[i + '40'], nshots[i + '36cor'])
ratios1.append(m1)
errs1.append(e1)
ms1 = calculate_mswd(ratios1, errs1)
mswds1.append(ms1)
rratios1.append(ratios1)
if tau % 5 == 0:
g.new_series(x, ratios1, plotid=1, type='line')
i = int((tau / 5) - 1)
# g.set_series_label('p', plotid=1, series=i)
# g.set_series_label('{} (ns)'.format(tau), plotid=1, series=i)
# g.plots[1].legend.plots = dict([(k, v[0]) for k, v in g.plots[1].plots.iteritems()])
# print g.plots[1].legend.plots
g.new_series(taus, mswds1, plotid=0, type='line_scatter')
g.set_y_limits(min(mswds1) - 5, max(mswds1) + 5, plotid=0)
# fit parabola and find minimum.
coeffs1 = polyfit(taus, mswds1, 2)
# min at dy=0 (ax2+bx+c)dx=dy==2ax+b
# 2ax+b=0 , x=-b/(2a)
dt = -coeffs1[1] / (2 * coeffs1[0])
