def test_copy_files_to_3dot_dir_2(self):
# act
Paths.set_up_paths(use_cluster=False)
GUM.copy_files_to_3dot_dir(
path_src_dir='/Users/u0120577/ROB_HOMOLOGY_HUMAN/RepairPDBs',
path_dst_dir=Paths.REPO_PDBS,
file_extension='.pdb',
starting_num=1,
num_to_copy_per_subdir=1000)
# assert
self.assertTrue(
os.path.exists(
os.path.join(Paths.REPO_PDBS, 'pdbs_1000', '2001...3000',
'RepairPDB_2031.pdb')),
'No file at ~/REPO_PDB_FASTA/pdbs/pdbs_1000/2001...3000/RepairPDB_2031.pdb found'
)
def test_copy_files_to_3dot_dir_1(self):
# act
Paths.set_up_paths(use_cluster=False)
# GUM.copy_files_to_3dot_dir(path_src_dir='/Users/u0120577/ROB_HOMOLOGY_HUMAN/Fasta',
GUM.copy_files_to_3dot_dir(
path_src_dir='/Users/u0120577/ROB_HOMOLOGY_HUMAN/pub_hg_fasta',
path_dst_dir=Paths.REPO_FASTAS + '/29611_fastas_1000',
file_extension=Str.FSTAEXT.value,
starting_num=1,
num_to_copy_per_subdir=1000)
# assert
self.assertTrue(
os.path.exists(os.path.join(Paths.REPO_FASTAS,
'29611_fastas_1000')),
'No folder at ~/REPO_PDB_FASTA/fastas/29611_fastas_1000 found')
self.assertTrue(
os.path.exists(
os.path.join(Paths.REPO_FASTAS, '29611_fastas_1000',
'1...1000')),
'No folder at ~/REPO_PDB_FASTA/fastas/29611_fastas_1000/1...1000 found'
)
self.assertTrue(
os.path.exists(
os.path.join(Paths.REPO_FASTAS, '29611_fastas_1000',
'2001...3000')),
'No folder at ~/REPO_PDB_FASTA/fastas/29611_fastas_1000/2001...3000 found'
)
self.assertTrue(
os.path.exists(
os.path.join(Paths.REPO_FASTAS, '29611_fastas_1000',
'1...1000',
'0001c4ad-0f86-3c74-9010-11fe302e765c.fasta')),
'No file at ~/REPO_PDB_FASTA/fastas/29611_fastas_1000/1...1000/'
'0001c4ad-0f86-3c74-9010-11fe302e765c.fasta found')
self.assertTrue(
os.path.exists(
os.path.join(Paths.REPO_FASTAS, '29611_fastas_1000',
'2001...3000',
'048b6fff-4495-3872-bccf-3d6d77cad903.fasta')),
'No file at ~/REPO_PDB_FASTA/fastas/29611_fastas_1000/2001...3000/'
'048b6fff-4495-3872-bccf-3d6d77cad903.fasta found')