def morph_fmri(args):
morph_from, morph_to = 'mg78', 'colin27'
nii_template = 'non-interference-v-interference_{hemi}.mgz'
from src.utils import freesurfer_utils as fu
utils.make_dir(op.join(MMVT_DIR, morph_to, 'fmri'))
for hemi in utils.HEMIS:
fu.surf2surf(
morph_from, morph_to, hemi, op.join(MMVT_DIR, morph_from, 'fmri', nii_template.format(hemi=hemi)),
op.join(MMVT_DIR, morph_to, 'fmri', nii_template.format(hemi=hemi)))
def morph_fmri(morph_from, morph_to, nii_template):
utils.make_dir(op.join(MMVT_DIR, morph_to, 'fmri'))
for hemi in utils.HEMIS:
fu.surf2surf(
morph_from, morph_to, hemi,
op.join(MMVT_DIR, morph_from, 'fmri',
nii_template.format(hemi=hemi)),
op.join(MMVT_DIR, morph_to, 'fmri',
nii_template.format(hemi=hemi)))
def morph_to_fsaverage(subject,
scan_rescan,
overwrite=False,
print_only=False):
for hemi in utils.HEMIS:
source_fname = op.join(FMRI_DIR, subject,
'CBF_{}_{}.mgz'.format(scan_rescan, hemi))
target_fname = op.join(
FMRI_DIR, subject,
'CBF_{}_{}_fsaverage.mgz'.format(scan_rescan, hemi))
if not op.isfile(target_fname) or overwrite:
fu.surf2surf(subject,
'fsaverage',
hemi,
source_fname,
target_fname,
print_only=print_only)