def testOverlapAlignmentFromFile(self):
with open('data/sequencing/overlapAlignment.txt') as fp:
seqs = [l.strip() for l in fp.readlines()]
score, align1, align2 = overlapAlignment(seqs[0], seqs[1])
print score
print align1
print align2
def testOverlapAlignmentFromFile(self):
with open('data/sequencing/overlapAlignment.txt') as fp:
seqs = [l.strip() for l in fp.readlines()]
score, align1, align2 = overlapAlignment(seqs[0], seqs[1])
print score
print align1
print align2
def testOverlapAlignment(self):
score, align1, align2 = overlapAlignment('PAWHEAE', 'HEAGAWGHEE')
self.assertEqual(1, score)
self.assertEqual('PAWHEAE------', align1)
self.assertEqual('---HEAGAWGHEE', align2)
def testOverlapAlignment(self):
score, align1, align2 = overlapAlignment('PAWHEAE', 'HEAGAWGHEE')
self.assertEqual(1, score)
self.assertEqual('PAWHEAE------', align1)
self.assertEqual('---HEAGAWGHEE', align2)
