def pixel_drill(task_id=None):
parameters = parse_parameters_from_task(task_id=task_id)
validate_parameters(parameters, task_id=task_id)
task = CustomMosaicToolTask.objects.get(pk=task_id)
if task.status == "ERROR":
return None
dc = DataAccessApi(config=task.config_path)
single_pixel = dc.get_stacked_datasets_by_extent(**parameters).isel(latitude=0, longitude=0)
clear_mask = task.satellite.get_clean_mask_func()(single_pixel)
single_pixel = single_pixel.where(single_pixel != task.satellite.no_data_value)
dates = single_pixel.time.values
if len(dates) < 2:
task.update_status("ERROR", "There is only a single acquisition for your parameter set.")
return None
exclusion_list = ['satellite', 'pixel_qa']
plot_measurements = [band for band in single_pixel.data_vars if band not in exclusion_list]
datasets = [single_pixel[band].values.transpose() for band in plot_measurements] + [clear_mask]
data_labels = [stringcase.titlecase("{} Units".format(band)) for band in plot_measurements] + ["Clear"]
titles = [stringcase.titlecase("{} Band".format(band)) for band in plot_measurements] + ["Clear Mask"]
style = ['r-o', 'g-o', 'b-o', 'c-o', 'm-o', 'y-o', '.']
task.plot_path = os.path.join(task.get_result_path(), "plot_path.png")
create_2d_plot(task.plot_path, dates=dates, datasets=datasets, data_labels=data_labels, titles=titles, style=style)
task.complete = True
task.update_status("OK", "Done processing pixel drill.")
def send(to,title, desc, status, workType, points=0, url=None):
workType = titlecase(workType.lower())
status = titlecase(status.lower())
embed = {
"color": 3447003,
"title": status + " - " + workType + " " + title,
"description": workType
+ " details: "
+ ((desc[:75] + "..") if len(desc) > 75 else desc),
"fields": [
{
"name": "Points",
"value": points,
},
],
}
if url:
embed["url"] = url
data = {
"embeds": [embed],
"username": "******",
"avatar_url": "https://lh3.googleusercontent.com/jdcCuHVB2NoCEdDqj1fNV05G8MC3TyBX6jY93v_Sba2ViqrVXIW-efKjVk3BR-41VhwV8gD0x0EHmlXK2UqvCCQLDTqOs2N1AXjppA=w1440-v1",
}
print(requests.post(to, json=data).text)
def _export_tags(self) -> list:
# todo https://github.com/OAI/OpenAPI-Specification/blob/master/versions/3.0.0.md#tagObject
tags = []
for item in self.models:
if item.description:
tags.append({
'name': stringcase.titlecase(item.name),
'description': item.description
})
else:
tags.append({
'name': stringcase.titlecase(item.name)
})
return tags
def process_metrics(self, metric):
"""Process metric text"""
metric = stringcase.titlecase(metric)
metric = self.change_to_acronym(metric)
words = metric.split()
metric = " ".join([self.process_words(w) for w in words])
return metric
def add_text_plugin_to_placeholder(self, page, slot, body=None):
placeholder = page.placeholders.get(slot=slot)
if not body:
body = "<h1>{} ({})</h1>\n<p>{}</p>\n".format(
self.get_page_title(page), stringcase.titlecase(slot),
lorem.paragraph())
api.add_plugin(placeholder, "TextPlugin", "de", body=body)
def convertCase(self, data):
txt = self.txtInput.text()
result = txt
if data == 'Alpha Num Case':
result = stringcase.alphanumcase(txt)
if data == 'Camel Case':
result = stringcase.camelcase(txt)
if data == 'Capital Case':
result = stringcase.capitalcase(txt)
if data == 'Const Case':
result = stringcase.constcase(txt)
if data == 'Lower Case':
result = stringcase.lowercase(txt)
if data == 'Pascal Case':
result = stringcase.pascalcase(txt)
if data == 'Path Case':
result = stringcase.pathcase(txt)
if data == 'Sentence Case':
result = stringcase.sentencecase(txt)
if data == 'Snake Case':
result = stringcase.snakecase(txt)
if data == 'Spinal Case':
result = stringcase.spinalcase(txt)
if data == 'Title Case':
result = stringcase.titlecase(txt)
if data == 'Trim Case':
result = stringcase.trimcase(txt)
if data == 'Upper Case':
result = stringcase.uppercase(txt)
self.lblResult.setText(result)
pyperclip.copy(result)
def get_schemes():
schemes = []
modules = [controls]
for item in pkgutil.iter_modules([os.path.dirname(plugins.__file__)]):
modules.append(import_module(f"frictionless.plugins.{item.name}"))
for module in modules:
for name, Dialect in vars(module).items():
match = re.match(r"(.+)Control", name)
if not match:
continue
name = match.group(1)
data = parse(Dialect.__doc__)
scheme = {"name": name, "options": []}
for param in data.params:
if param.arg_name.startswith("descriptor"):
continue
type = param.type_name
text = param.description.capitalize()
name = stringcase.titlecase(param.arg_name.replace("?", ""))
scheme["options"].append({
"name": name,
"text": text,
"type": type
})
schemes.append(scheme)
return schemes
def get_attribute_list(attributes):
atts = [{
'name': 'id',
'type': 'int'
}, {
'name': 'createdAt',
'type': 'String'
}]
# convert mm data type to Dart data type
data_types = {
'String': 'String',
'Int': 'int',
'Double': 'double',
'bool': 'bool'
}
for attribute in attributes:
try:
aname, atype = attribute['@TEXT'].split(':')
atype = atype.lstrip()
atype = stringcase.titlecase(atype)
atype = data_types[atype]
except ValueError:
aname = attribute['@TEXT']
atype = 'String'
aname = stringcase.lowercase(aname)
aname = utils.to_camel_case(aname)
atts.append({'name': aname, 'type': atype})
return atts
def build_formats_reference():
TEMPLATE = """
---
title: Formats Reference
---
It's a formats reference supported by the main Frictionless package. If you have installed external plugins, there can be more formats available. Below we're listing a format group name (or a parser name) like Excel, which is used, for example, for `xlsx`, `xls` etc formats. Options can be used for creating dialects, for example, `dialect = ExcelDialect(sheet=1)`.
{% for format in formats %}
## {{ format.name }}
{% if format.options %}
{% for option in format.options %}
### {{ option.name }}
> Type: {{ option.type }}
{{ option.text }}
{% endfor %}
{% else %}
There are no options available.
{% endif %}
{% endfor %}
"""
# Input
formats = []
modules = []
for item in pkgutil.iter_modules([os.path.dirname(plugins.__file__)]):
modules.append(import_module(f"frictionless.plugins.{item.name}"))
for module in modules:
for name, Dialect in vars(module).items():
match = re.match(r"(.+)Dialect", name)
if not match:
continue
name = match.group(1)
data = parse(Dialect.__doc__)
format = {"name": name, "options": []}
for param in data.params:
if param.arg_name.startswith("descriptor"):
continue
type = param.type_name
text = param.description.capitalize()
name = stringcase.titlecase(param.arg_name.replace("?", ""))
format["options"].append({
"name": name,
"text": text,
"type": type
})
formats.append(format)
# Ouput
template = Template(inspect.cleandoc(TEMPLATE))
document = template.render(formats=formats).strip()
write_file(os.path.join("docs", "references", "formats-reference.md"),
document)
print("Built: Formats Reference")
def get_applicant_details(self, advisor_id):
applicant = AdvisorApplicant.query.get(advisor_id)
if not applicant:
return jsonify({'error': 'Advisor not found'}), 404
return jsonify(
{titlecase(k): v
for k, v in applicant.to_json().items()}), 200
def build_schemes_reference():
TEMPLATE = """
---
title: Schemes Reference
---
It's a schemes reference supported by the main Frictionless package. If you have installed external plugins, there can be more schemes available. Below we're listing a scheme group name (or a loader name) like Remote, which is used, for example, for `http`, `https` etc schemes. Options can be used for creating controls, for example, `control = RemoteControl(http_timeout=1)`.
{% for scheme in schemes %}
## {{ scheme.name }}
{% if scheme.options %}
{% for option in scheme.options %}
### {{ option.name }}
> Type: {{ option.type }}
{{ option.text }}
{% endfor %}
{% else %}
There are no options available.
{% endif %}
{% endfor %}
"""
# Input
schemes = []
modules = []
for item in pkgutil.iter_modules([os.path.dirname(plugins.__file__)]):
modules.append(import_module(f"frictionless.plugins.{item.name}"))
for module in modules:
for name, Control in vars(module).items():
match = re.match(r"(.+)Control", name)
if not match:
continue
name = match.group(1)
data = parse(Control.__doc__)
scheme = {"name": name, "options": []}
for param in data.params:
if param.arg_name.startswith("descriptor"):
continue
type = param.type_name
text = param.description.capitalize()
name = stringcase.titlecase(param.arg_name.replace("?", ""))
scheme["options"].append({
"name": name,
"text": text,
"type": type
})
schemes.append(scheme)
# Output
template = Template(inspect.cleandoc(TEMPLATE))
document = template.render(schemes=schemes).strip()
write_file(os.path.join("docs", "references", "schemes-reference.md"),
document)
print("Built: Schemes Reference")
def arcgis(catalog_record, url):
if 'FeatureServer' in url:
service_name = url.split('/services/')[-1].split('/FeatureServer')[0]
else:
service_name = url.split('/services/')[-1].split('/MapServer')[0]
headers = {
'Content-Type': 'application/json',
'Accept': 'application/json',
}
response = requests.get(url+"?f=pjson", headers=headers)
md = response.json()
from pprint import pprint
pprint(md.keys())
assert 'currentVersion' in md, 'currentVersion not found in json response'
if not catalog_record.id:
catalog_record.save()
for index, column in enumerate(md.get('fields', [])):
rc = RecordColumn.objects.get_or_create(
catalog_record=catalog_record,
field_name=column['name'])[0]
rc.data_type = column['type']
rc.label = column['alias']
rc.catalog_record_order = index
#rc.render_type = column['domain'] ? length?
rc.save()
dataset = Dataset.objects.get_or_create(catalog_record=catalog_record)[0]
dataset.last_sync = datetime.now()
dataset.sourced_meta_data = md
dataset.title = md.get('name', stringcase.titlecase(service_name))
dataset.description = md.get('description', '') or md.get('serviceDescription', '')
#dataset.issued = datetime.utcfromtimestamp(md['publicationDate'])
#dataset.modified = datetime.utcfromtimestamp(md['indexUpdatedAt'])
dataset.identifier = md.get('id', service_name)
#if 'tags' in md:
# dataset.keyword = ', '.join(md['tags'])
dataset.theme = md.get('category', '')
dataset.save()
#only record one distriubtion: ARCGIS
dist = Distribution.objects.get_or_create(dataset=dataset)[0]
dist.license = md.get('license', '')
dist.rights = md.get('copyrightText', '')
dist.download_url = url
dist.access_url = catalog_record.landing_page or catalog_record.distribution_fields
dist.media_type = 'application/json'
dist.format = 'arcgis'
#blobFilename?
dist.save()
def test_titlecase(self):
from stringcase import titlecase
eq = self.assertEqual
eq('Foo Bar', titlecase('fooBar'))
eq('Foo Bar', titlecase('foo_bar'))
eq('Foo Bar', titlecase('foo-bar'))
eq('Foo Bar', titlecase('foo.bar'))
eq(' Bar Baz', titlecase('_bar_baz'))
eq(' Bar Baz', titlecase('.bar_baz'))
eq('', titlecase(''))
eq('None', titlecase(None))
def test_titlecase(self):
from stringcase import titlecase
eq = self.assertEqual
eq('Foo Bar', titlecase('fooBar'))
eq('Foo Bar', titlecase('foo_bar'))
eq('Foo Bar', titlecase('foo-bar'))
eq('Foo Bar', titlecase('foo.bar'))
eq(' Bar Baz', titlecase('_bar_baz'))
eq(' Bar Baz', titlecase('.bar_baz'))
eq('', titlecase(''))
eq('None', titlecase(None))
def print_state_message(self, msg):
if msg['job_id'] not in self.ids_to_name:
return
time = util.str_timestamp(msg['time'])
state = "[%s] --> %s" % (time, msg['state'])
output = "%s%s" % (self._message_prefix(msg),
color_string(state, color="bold_white"))
print(output)
for key in ['reason', 'message', 'exit_code']:
if msg.get(key, None) is not None:
message = "[{}] {}: {}".format(time, stringcase.titlecase(key), msg[key])
print("{}{}".format(self._message_prefix(msg), color_string(message, color="bold_white")))
def create_new_dashboard(self, measurement):
with open('templates/dashboard_template.json') as dashboardfile:
self.dashboard = json.load(dashboardfile)
self.current_id = 1
self.dashboard['title'] = stringcase.titlecase(measurement)
self.dashboard['uid'] = measurement
self.dashboard['tags'] = [self.generated_tag]
self.history[measurement] = {}
# With every new dashboard we add a summary panel first
self.add_summary_panel_to_dashboard(measurement)
def pixel_drill(task_id=None):
parameters = parse_parameters_from_task(task_id=task_id)
validate_parameters(parameters, task_id=task_id)
task = FractionalCoverTask.objects.get(pk=task_id)
if task.status == "ERROR":
return None
dc = DataAccessApi(config=task.config_path)
single_pixel = dc.get_stacked_datasets_by_extent(**parameters)
clear_mask = task.satellite.get_clean_mask_func()(single_pixel.isel(latitude=0, longitude=0))
single_pixel = single_pixel.where(single_pixel != task.satellite.no_data_value)
dates = single_pixel.time.values
if len(dates) < 2:
task.update_status("ERROR", "There is only a single acquisition for your parameter set.")
return None
def _apply_band_math(ds, idx):
# mask out water manually. Necessary for frac. cover.
wofs = wofs_classify(ds, clean_mask=clear_mask[idx], mosaic=True)
clear_mask[idx] = False if wofs.wofs.values[0] == 1 else clear_mask[idx]
fractional_cover = frac_coverage_classify(ds, clean_mask=clear_mask[idx], no_data=task.satellite.no_data_value)
return fractional_cover
fractional_cover = xr.concat(
[
_apply_band_math(single_pixel.isel(time=data_point, drop=True), data_point)
for data_point in range(len(dates))
],
dim='time')
fractional_cover = fractional_cover.where(fractional_cover != task.satellite.no_data_value).isel(
latitude=0, longitude=0)
exclusion_list = []
plot_measurements = [band for band in fractional_cover.data_vars if band not in exclusion_list]
datasets = [fractional_cover[band].values.transpose() for band in plot_measurements] + [clear_mask]
data_labels = [stringcase.titlecase("%{}".format(band)) for band in plot_measurements] + ["Clear"]
titles = [
'Bare Soil Percentage', 'Photosynthetic Vegetation Percentage', 'Non-Photosynthetic Vegetation Percentage',
'Clear Mask'
]
style = ['ro', 'go', 'bo', '.']
task.plot_path = os.path.join(task.get_result_path(), "plot_path.png")
create_2d_plot(task.plot_path, dates=dates, datasets=datasets, data_labels=data_labels, titles=titles, style=style)
task.complete = True
task.update_status("OK", "Done processing pixel drill.")
async def nick_maker(self, guild: discord.Guild, old_shit_nick):
old_shit_nick = self.strip_accs(old_shit_nick)
new_cool_nick = re.sub("[^a-zA-Z0-9 \n.]", "", old_shit_nick)
new_cool_nick = " ".join(new_cool_nick.split())
new_cool_nick = stringcase.lowercase(new_cool_nick)
new_cool_nick = stringcase.titlecase(new_cool_nick)
default_name = await self.config.guild(guild).new_custom_nick()
if len(new_cool_nick.replace(" ", "")) <= 1 or len(new_cool_nick) > 32:
if default_name == "random":
new_cool_nick = await self.get_random_nick(2)
elif default_name:
new_cool_nick = default_name
else:
new_cool_nick = "simp name"
return new_cool_nick
def set_levels_dropdown_options(variable_dropdown_value):
#Check whether single or multi variable
single_var, multi_var = sort_variables_by_type(philly)
if variable_dropdown_value in multi_var:
levels = get_multi_var_levels(philly, variable_dropdown_value)
options = [{'label': titlecase(e), 'value': e} for e in levels]
value = options[0]['value']
return options, value, {'display': 'block'}
else:
return [], [], {'display': 'none'}
def handle_many_to_many_field(field: models.ManyToManyField) -> dict:
data = {
"name": ("m2m" + (field.model.class_name()) + stringcase.titlecase(field.name))[:-1],
"columns": [
{
'column_name': stringcase.snakecase(field.model.class_name()) + "_id",
'column_type': 'integer',
'column_settings': [f"ref: > {field.model.class_name()}.id"]
}, {
'column_name': stringcase.snakecase(field.related_model.class_name()) + "_id",
'column_type': 'integer',
'column_settings': [f"ref: > {field.related_model.class_name()}.id"]
}
],
"many_to_many": []
}
data['name'] = data['name'].replace(" ", "")
return data
def plot_hists_from_dir(model_root, columns=10, scale=20):
"""Plot all the histories in `model_dir`.
For each named property, creates a plot with all the model histories that had
that named property (loss or metric)
:returns: fig, axes
"""
history_fnames = glob(join(model_root, '*history.json'))
logger.debug(f"history_fnames: {history_fnames}")
if not history_fnames:
logger.warning(f"no history saved at {model_root}")
return None, None
hist_data = {} # {property_name -> {model_name -> [values]}}
for fname in history_fnames:
hist = utils.json_load(fname)
model_name = pascalcase(basename(fname).replace('_history.json', ''))
for prop_name, values in hist.items():
if not isinstance(values, list):
continue
if hist_data.get(prop_name) is None:
hist_data[prop_name] = {}
hist_data[prop_name][model_name] = values
columns = min(columns, len(hist_data))
rows = max(1, len(hist_data) // columns)
fig, axes = plt.subplots(rows,
columns,
squeeze=False,
figsize=(scale, scale * rows / columns))
for i, (prop_name, prop_data) in enumerate(hist_data.items()):
ax = axes[i // columns, i % columns]
for model_name, values in prop_data.items():
ax.plot(values, '-', label=model_name)
ax.set_title(titlecase(prop_name))
ax.set_xlabel('Epoch')
ax.set_ylabel('Loss')
fig.suptitle("Training")
plt.legend()
return fig, axes
def set_levels_dropdown_options(df_store, variable_dropdown_value):
#Load city data
city_data = json.loads(df_store)
#Check whether single or multi variable
single_var, multi_var = sort_variables_by_type(city_data)
if variable_dropdown_value in multi_var:
levels = get_multi_var_levels(city_data, variable_dropdown_value)
options = [{'label': titlecase(e), 'value': e} for e in levels]
value = options[0]['value']
return options, value, {'display': 'block'}
else:
return [], [], {'display': 'none'}
def main(argv):
if len(sys.argv) != 2:
print('{} <ion-mainfest.json>' % (sys.argv[0]))
sys.exit(2)
mainfestPath = sys.argv[1]
with open(mainfestPath, 'r') as mainfestFile:
mainfest = json.loads(mainfestFile.read())
names = []
cases = []
codePoints = []
for icon in mainfest['icons']:
names.append(r'"%s"' % titlecase(icon['name']).replace(
'Md ', 'Material ').replace('Ios ', 'iOS '))
cases.append(camelcase(icon['name'].replace('-', '_')))
codePoints.append(r'"\u{%s}"' % (icon['code'][2:]))
print(', '.join(names))
print(', '.join(cases))
print(', '.join(codePoints))
def generate_graph(self, postal_code, country_code, start, end,
selected_metrics, graph_type, grid):
observations = Observations.Observations(postal_code, country_code,
start, end)
figure(num=None, figsize=(18, 6), dpi=80, facecolor='w', edgecolor='k')
vs_titles = ''
for metric in selected_metrics:
title = stringcase.titlecase(metric)
metric_values = observations.get_values_by_key(metric)
label = title + ' ' + metric_values['unit_code']
if graph_type == 'bar':
plt.bar(metric_values['timestamps'],
metric_values['values'],
label=label)
elif graph_type == 'barh':
plt.barh(metric_values['timestamps'],
metric_values['values'],
label=label)
elif graph_type == 'scatter':
plt.scatter(metric_values['timestamps'],
metric_values['values'],
label=label)
else:
plt.plot(metric_values['timestamps'],
metric_values['values'],
label=label)
if vs_titles == '':
vs_titles += title
else:
vs_titles += ' vs. ' + title
plt.xlabel("Date")
plt.ylabel("Value")
plt.title(
f"{vs_titles}\n{postal_code}, {country_code}\nFrom {start} to {end}"
)
plt.legend()
plt.grid(grid)
plt.show()
self.update_status('Graph Successfully Created!', 'green')
def case_conversion(source, style: StringStyle) -> str:
"""Case conversion of the input (usually fully qualified vss node inlcuding the path) into a supported
string style representation.
Args:
source: Source string to apply conversion to.
style: Target string style to convert source to.
Returns:
Converted source string according to provided string style.
"""
if style == StringStyle.ALPHANUM_CASE:
return stringcase.alphanumcase(source)
elif style == StringStyle.CAMEL_CASE:
return camel_case(source)
elif style == StringStyle.CAMEL_BACK:
return camel_back(source)
elif style == StringStyle.CAPITAL_CASE:
return stringcase.capitalcase(source)
elif style == StringStyle.CONST_CASE:
return stringcase.constcase(source)
elif style == StringStyle.LOWER_CASE:
return stringcase.lowercase(source)
elif style == StringStyle.PASCAL_CASE:
return stringcase.pascalcase(source)
elif style == StringStyle.SENTENCE_CASE:
return stringcase.sentencecase(source)
elif style == StringStyle.SNAKE_CASE:
return stringcase.snakecase(source)
elif style == StringStyle.SPINAL_CASE:
return stringcase.spinalcase(source)
elif style == StringStyle.TITLE_CASE:
return stringcase.titlecase(source)
elif style == StringStyle.TRIM_CASE:
return stringcase.trimcase(source)
elif style == StringStyle.UPPER_CASE:
return stringcase.uppercase(source)
else:
return source
def __init__(self, file_name='', *args, **kwargs):
"""
Args:
file_name ():
*args ():
**kwargs (): file_name
"""
self.file_name = file_name
self.raw_data = kwargs.get('raw_data', '')
self.mapper = {}
self.soup = None
self.site_name = titlecase(
self.__class__.__name__.replace('Parser', ''))
self.snake_site_name = snakecase(
self.__class__.__name__.replace('Parser', ''))
self.log_level = kwargs.get('log_level', 10)
# convert startup_dir to PurePath
self.startup_dir = Path(str(kwargs.get('startup_dir', '/tmp')))
# a basic yaml is shared configs among all yaml files
self.basic_yaml = kwargs.get('basic_yaml', '')
# site yaml file is where all site's selector behold
self.startup_yaml = kwargs.get('startup_yaml', self.snake_site_name)
self.startup_yaml_config = kwargs.get('startup_yaml_config')
# if is_test_mode, will raise exceptions instead of log
self.is_test_mode = kwargs.get('is_test_mode', False)
self.test_keys = kwargs.get('test_keys', [])
# bs4 basic configs
self.encoding = kwargs.get('encoding', '')
self.features = kwargs.get('features', 'lxml')
self.reserved_yaml_keys = kwargs.get('reserved_yaml_keys', [])
self.elems_default_index = kwargs.get('elems_default_index', 0)
self.selected_keys = kwargs.get('selected_keys', [])
# where our parsed data behold
self._data = {}
self._spawn()
def _export_paths(self) -> dict:
data = {}
for model in self.models:
if model.name in get_avishan_config().get_openapi_ignored_path_models():
continue
for direct_callable in model.direct_callables:
direct_callable: DirectCallable
if direct_callable.hide_in_redoc or direct_callable.documentation is None:
continue
if direct_callable.url not in data.keys():
data[direct_callable.url] = Path(url=direct_callable.url)
setattr(data[direct_callable.url], direct_callable.method.name.lower(), Operation(
summary=direct_callable.documentation.title,
description=direct_callable.documentation.description,
request_body=Operation.extract_request_body_from_direct_callable(direct_callable),
responses=Operation.extract_responses_from_direct_callable(direct_callable),
tags=[stringcase.titlecase(model.name)]
))
for key, value in data.items():
data[key] = value.export()
return data
This table maps the {schema_name} descriptive statistic to the OMH to FHIR additional Observation codings ( code system `http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes`). If the schema element is absent, the default measure is a single measurement and there is no additional coding.
|body.descriptive_statistic|Observation.coding.code|Observation.coding.display|
|---|---|---|'''
stat_codes = [
'average', 'maximum', 'minimum', 'count', 'totalcount', 'median',
'std-dev', 'sum', 'variance', '20-percent', '80-percent', '4-lower',
'4-upper', '4-dev', '5-1', '5-2', '5-3', '5-4', 'skew', 'kurtosis',
'regression'
]
for k, v in sorted(f.omh_datatype_mapping.items()):
if v[6]:
schema_name = spinalcase(k)
schema_title = titlecase(k)
print(header.format(schema_name=schema_name,
schema_title=schema_title))
for stat_code in stat_codes:
print('|{stat_code}|{obs_code}|{obs_display}|'.format(
stat_code=stat_code,
obs_code='{schema_name}-{stat_code}'.format(
schema_name=schema_name, stat_code=stat_code),
obs_display='{schema_title} {stat_code}'.format(
schema_title=schema_title,
stat_code=titlecase(stat_code))))
print('{: .grid}\n')
# create omh component mapping tables
print("|{0}|{1}|{2}|{3}|{4}|".format('Component Name', 'Component Code System',
def omh_to_fhir(data):
# create an python object from the json schema
x = json2obj(data)
# get schema name ( e.g. 'step_count')
schema_id = x.header.schema_id.name
# map code and category from schema_id.name and set some default values
observation_category_code = f.omh_datatype_mapping[schema_id][0]
observation_category_display = f.omh_datatype_mapping[schema_id][1]
observation_code_system = f.omh_datatype_mapping[schema_id][2]
observation_code_code = f.omh_datatype_mapping[schema_id][3]
observation_code_display = f.omh_datatype_mapping[schema_id][4]
descriptive_statistic = f.omh_datatype_mapping[schema_id][6]
descriptive_statistic_denominator = f.omh_datatype_mapping[schema_id][7]
print('Observation.category = {category}'.format(
category=observation_category_code))
print('Observation.code = {code} ({display})'.format(
code=observation_code_code, display=observation_code_display))
# get actual numeric value - may need to inspect schema path to find it.
try:
observation_value_quantity_value = getattr(x.body, schema_id)
try:
observation_value_quantity_value = getattr(
observation_value_quantity_value, 'value')
observation_value_quantity_unit = getattr(
observation_value_quantity_value, 'unit')
observation_value_quantity_system = 'http://unitsofmeasure.org'
observation_value_quantity_code = maps.concept_maps[
observation_value_quantity_unit][1]
except AttributeError: # no value and unit element like in step step_count
observation_value_quantity_unit = f.omh_datatype_mapping[
schema_id][5][0] # use default
observation_value_quantity_system = 'http://unitsofmeasure.org'
observation_value_quantity_code = maps.concept_maps[
observation_value_quantity_unit][1]
except AttributeError: # no value element like in blood_pressure panel
observation_value_quantity_value = -1 # assign as a null value for now
observation_value_quantity_system = 'None'
observation_value_quantity_unit = 'None'
observation_value_quantity_code = 'None'
# print(observation_value_quantity_value)
# todo map to appropriate ucum units create table lookup.
try: # mapping unit from descriptive_statistic_denominator for valueQuantity
statistic_key = x.body.descriptive_statistic_denominator
observation_value_quantity_unit = '{numerator}{denominator}'.format(
numerator=observation_value_quantity_unit,
denominator=f.omh_denominator_value[statistic_key][0])
observation_value_quantity_code = '{numerator}{denominator}'.format(
numerator=observation_value_quantity_code,
denominator=f.omh_denominator_value[statistic_key][1])
except AttributeError:
pass # use default units variables
try: # additional codings for stats
addl_observation_coding_system = 'http://hl7.org/fhir/omh_fhir_observation_codes'
addl_observation_coding_code = '{}-{}'.format(
spinalcase(schema_id), spinalcase(x.body.descriptive_statistic))
addl_observation_coding_display = '{} {}'.format(
titlecase(schema_id), titlecase(x.body.descriptive_statistic))
except AttributeError:
addl_observation_coding_system = 'None'
addl_observation_coding_code = 'None'
addl_observation_coding_display = 'None'
#map specimen_source codes to specimen code extension using the concepts from the specimen_source valueset.
try:
observation_specimen_code_extension_url = 'http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_extension_observation_specimen_code'
observation_specimen_code_system = maps.concept_maps[
x.body.specimen_source][0]
observation_specimen_code_code = maps.concept_maps[
x.body.specimen_source][1]
observation_specimen_code_display = maps.concept_maps[
x.body.specimen_source][2]
observation_specimen_code_text = x.body.specimen_source
except AttributeError: #no specimen_source
observation_specimen_code_system = 'None'
observation_specimen_code_code = 'None'
observation_specimen_code_display = 'None'
observation_specimen_code_extension_url = 'None'
observation_specimen_code_text = 'None'
#add components
observation_componentx = []
for component in f.omh_component_mapping:
try:
component_name = getattr(x.body, component)
observation_component_code_system = f.omh_component_mapping[
component][0]
observation_component_code_code = f.omh_component_mapping[
component][1]
observation_component_code_display = f.omh_component_mapping[
component][2]
if f.omh_component_mapping[component][
3] == 'valueCodeableConcept': #look up code mappings (e.g. temporal_relationship_to_sleep)
observation_component_value_codeableconcept_system = maps.concept_maps[
component_name][0]
observation_component_value_codeableconcept_code = maps.concept_maps[
component_name][1]
observation_component_value_codeableconcept_display = maps.concept_maps[
component_name][2]
observation_component_value_codeableconcept_text = component_name
observation_component_value_quantity_value = -1
observation_component_value_quantity_unit = 'None'
observation_component_value_quantity_system = 'None'
observation_component_value_quantity_code = 'None'
else: # enter values directly ( e.g. blood pressure )
observation_component_value_quantity_value = getattr(
component_name, 'value')
# print(component, observation_component_value_quantity_value)
observation_component_value_quantity_unit = getattr(
component_name, 'unit')
observation_component_value_quantity_system = 'http://unitsofmeasure.org'
observation_component_value_quantity_code = maps.concept_maps[
observation_component_value_quantity_unit][1]
observation_component_value_codeableconcept_system = 'None'
observation_component_value_codeableconcept_code = 'None'
observation_component_value_codeableconcept_display = 'None'
observation_component_value_codeableconcept_text = 'None'
observation_componentx.append(
fmt.format(f.observation_componentx_template,
observation_component_code_system=
observation_component_code_system,
observation_component_code_code=
observation_component_code_code,
observation_component_code_display=
observation_component_code_display,
observation_component_value_codeableconcept_system=
observation_component_value_codeableconcept_system,
observation_component_value_codeableconcept_code=
observation_component_value_codeableconcept_code,
observation_component_value_codeableconcept_display=
observation_component_value_codeableconcept_display,
observation_component_value_codeableconcept_text=
observation_component_value_codeableconcept_text,
observation_component_value_quantity_value=
observation_component_value_quantity_value,
observation_component_value_quantity_unit=
observation_component_value_quantity_unit,
observation_component_value_quantity_system=
observation_component_value_quantity_system,
observation_component_value_quantity_code=
observation_component_value_quantity_code))
except AttributeError: # no component in this instance
pass
# print('observation_componentx ={}'.format(','.join(observation_componentx)))
observation_componentx = ','.join(
observation_componentx) # change to string for string formatting
omh_obs_json = fmt.format(
f.omh_obs_templ,
server_assigned_resource_id=None,
# additional codings for stats
addl_observation_coding_system=addl_observation_coding_system,
addl_observation_coding_display=addl_observation_coding_display,
addl_observation_coding_code=addl_observation_coding_code,
#specimen_source mappings
observation_specimen_code_system=observation_specimen_code_system,
observation_specimen_code_code=observation_specimen_code_code,
observation_specimen_code_display=observation_specimen_code_display,
# add components
observation_componentx=observation_componentx,
# header mappings
header=x.header,
# body mappings (time mappings)
body=x.body,
# codes, value, units
observation_category_code=observation_category_code,
observation_category_display=observation_category_display,
observation_code_system=observation_code_system,
observation_code_code=observation_code_code,
observation_code_display=observation_code_display,
# measure value
observation_value_quantity_value=observation_value_quantity_value,
observation_value_quantity_unit=observation_value_quantity_unit,
observation_value_quantity_system=observation_value_quantity_system,
observation_value_quantity_code=observation_value_quantity_code,
descriptive_statistic=descriptive_statistic,
descriptive_statistic_denominator=descriptive_statistic_denominator,
)
# print(omh_obs_json)
# delete Nulls using scrunbd function this is one way or could load in the fhir python library
# convert json to dict
omh_obs_dict = json.loads(omh_obs_json)
omh_obs_dict = scrub_dict(omh_obs_dict)
# ....and back to json
print('*********************this OMH datapoint file**************')
print(json_string)
print('******maps to this FHIR Observation**********')
print(json.dumps(omh_obs_dict, indent=3))
def _player_embed_2(self, player: BSPlayer):
"""New player embed."""
description = '{}'.format(player.tag.upper())
em = discord.Embed(title=player.name,
description=description,
color=random_discord_color())
# club
player_club_name = player.club.name
player_club_tag = player.club.tag
if not player_club_name:
player_club_name = 'Not in club'
if not player_club_tag:
player_club_tag = 'N/A'
em.add_field(name=player_club_name,
value=player_club_tag,
inline=False)
# fields
em.add_field(name='Trophies',
value="{} / {} PB \n{} XP".format(
player.trophies or 0,
player.highestTrophies or 0,
player.expLevel or 0,
),
inline=False)
em.add_field(name='Time',
value="Big Brawler: {} \nRobo Rumble: {}".format(
format_time(player.bestTimeAsBigBrawler or 0),
format_time(player.bestRoboRumbleTime or 0),
),
inline=False)
em.add_field(name="Brawlers Unlocked", value=str(len(player.brawlers)))
em.add_field(name='Victories',
value="**{}** 3v3, **{}** Solo SD, **{}** Duo SD".format(
player['3vs3Victories'] or 0, player.soloVictories
or 0, player.duoVictories or 0),
inline=False)
# brawlers
brawlers = sorted(
player.brawlers,
key=lambda x: (x.get('trophies', 0), x.get('highestTrophies', 0)),
reverse=True,
)
o = []
for b in brawlers or []:
emoji_name = b.name.lower().replace(' ', '').replace('-',
'').replace(
'.', '')
emoji = self.get_emoji(emoji_name)
o.append(
'{emoji} `{trophies: >3} / {pb: >3} Lvl {level: >2}`\u2800 {name}'
.format(
emoji=emoji,
trophies=b.trophies,
pb=b.highestTrophies,
level=b.power,
name=stringcase.titlecase(b.name.lower()),
))
f = 5
for index, group in enumerate(grouper(o, f)):
i0 = (index * f) + 1
i1 = (index + 1) * f
grp = [g for g in group if g]
em.add_field(
name="Brawlers {}-{}".format(i0, i1),
value='\n'.join(grp),
inline=False,
)
return em
def generate_name(postfix: str) -> str:
dir_name = stringcase.titlecase(os.path.basename(os.getcwd()))
return f"{dir_name} {postfix}"