def create_influence_graph(filename, influence_graph_grep='ig\:#', window_size=1000, calculate_on=1000): pre_callback = Callback.to_symmetric graph, _ = SwarmParser.read_file_and_measures( filename, influence_graph_grep=influence_graph_grep, window_size=window_size, pre_callback=pre_callback, calculate_on=calculate_on) igraph_graph = InfluenceGraph.create_graph_from_matrix(graph[0][1]) return igraph_graph
def get_number_of_components(filename, window_size, min_weight, influence_graph_grep='ig\:#', **kargs): pos_callback = lambda x: SwarmAnalyzer.get_number_of_components_of_graph( x, min_weight=min_weight * 2 * window_size, pre_callback=Callback.to_symmetric) all_graph_matrices, _ = SwarmParser.read_file_and_measures( filename, influence_graph_grep=influence_graph_grep, pos_callback=pos_callback, window_size=window_size, **kargs) return all_graph_matrices
def plot_boxplot_fitness(sets_of_filenames, output_filename=None, info_grep="it\:#", yticks_args=None, legends=None, showmeans=False, showfliers=True, whis=1., widths=0.7, bootstrap=2000, jump_lines=None, **kargs): """ :param sets_of_filenames: :param output_filename: :param info_grep: :return: """ get_infos = lambda x: [ SwarmParser.read_file_and_measures( filename, informations_grep=info_grep, jump_lines=jump_lines)[ 1][info_grep][-1][1] for filename in x ] values = map(get_infos, sets_of_filenames) boxes_kargs = { 'color': 'black', 'linewidth': 1.3, 'zorder': 3, 'fillstyle': 'full', 'facecolor': '#a6bddb' } means_kargs = { 'color': 'black', 'fillstyle': 'full', 'markerfacecolor': "black", 'marker': "s", 'markersize': 3, 'mew': 1, 'mec': 'black', 'zorder': 5 } fliers_kargs = { 'color': 'black', 'marker': "s", 'markersize': 1, 'mew': 1.2, 'mec': 'black' } whiskers_kargs = { 'color': 'black', 'linewidth': 1.2, 'zorder': 2, 'linestyle': '-', 'alpha': 1.0, 'mec': 'black' } medians_kargs = { 'color': 'black', 'linewidth': 1.6, 'zorder': 5, 'alpha': 0.3 } caps_kargs = {'linewidth': 1.5, 'color': 'black'} xticks_args = None if legends is not None: xticks_args = (range(1, len(legends) + 1), legends) Plotter.plot_boxplots(values, grid_only='y', xlim=(0.3, len(sets_of_filenames) + 0.6), yticks_args=yticks_args, whis=whis, xticks_args=xticks_args, grid=False, widths=widths, bootstrap=bootstrap, boxes_kargs=boxes_kargs, showmeans=showmeans, showfliers=showfliers, fliers_kargs=fliers_kargs, means_kargs=means_kargs, whiskers_kargs=whiskers_kargs, medians_kargs=medians_kargs, caps_kargs=caps_kargs, output=output_filename, **kargs)