def get_files_direc(direc='.', mode=''):
'''
Task: return list file in subdirectory passed and directory passed
'''
dir_direc = [direc]
file_direc = []
# find all path of file in src
while dir_direc:
# take directory from src
try:
direc = dir_direc.pop()
entry_direc = os.scandir(direc)
for e in entry_direc:
# store file in data_dir
if e.is_file():
file_direc.append(rm_head_lgit(os.path.abspath(e.path)))
# store directory in data_dir
if e.is_dir() and ".lgit" not in e.path:
dir_direc.append(e.path)
except PermissionError:
if mode == 'add':
print("warning: could not open directory '%s/%s/': "
"Permission denied " % (os.getcwd(), direc))
exit_program()
return file_direc
def handle_subshell(command):
try:
pid = os.fork()
except OSError:
pass
if pid == 0:
handle_logic_op(command[0][1:-1])
exit_program(int(os.environ['?']))
exit_code = os.wait()[1]
os.environ['?'] = str(exit_code)
def builtins_exit(exit_code='0'): # implement exit
Shell.save_history()
Shell.printf('exit')
exit_value = 0
if exit_code:
if exit_code.isdigit():
exit_value = int(exit_code)
else:
Shell.printf('intek-sh: exit: ' + exit_code)
curses.endwin()
exit_program(exit_value)
def create_structure_lgit(direcs, files):
if not os.path.exists('.lgit'):
os.makedirs('.lgit')
elif os.path.isfile('.lgit'):
print('fatal: Invalid gitfile format: .lgit')
exit_program()
for d in direcs:
if os.path.isfile(d):
print("%s: Not a directory" % (os.path.join(os.getcwd(), d)))
else:
os.makedirs(d)
for f in files:
if not os.path.isdir(f):
open(f, 'w').close()
else:
print("error: unable to mmap '%s' Is a directory" %
(os.path.join(os.getcwd(), f)))
def preprocesser(adapter, in_file1, in_file2, out_file):
"""preprocesses the fastq files with sicle and optionally cutadapt, writes logs of what was done, removes intermediary files
keyword arguments:
adapter: str, the adapter sequnce to be cut with cutadapt, make it an empty string ("") if running cutadapt is not required
in_file1: str, the name of the (first) fastq file to be preprocessed
in_file2: str, the name of the second fastq file if the sequence is paired ended, make it an empty string ("") if the sequence is single ended
out_file: str, the desired name of the output fastq file
WARNING: will remove all files in the working directory that start with "temp"
"""
#start_time = time.time()
#timelog(start_time,"process_start")
if os.path.exists(in_file1):
if adapter != "":
if in_file2 == "":
cmd = make_single_cutadapt_command(in_file1, "temp1.fq",
adapter)
in_file1 = "temp1.fq"
else:
cmd = make_double_cutadapt_command(in_file1, in_file2,
"temp1.fq", "temp2.fq",
adapter)
in_file1 = "temp1.fq"
in_file2 = "temp2.fq"
output = run_commandline(cmd)
write_log("CUTADAPT", output)
#timelog(start_time,"cutadapt")
if in_file2 == "":
cmd = make_single_sickle_command(in_file1, "preprocess.fastq")
else:
cmd = make_double_sickle_command(in_file1, in_file2,
"preprocess1.fastq",
"preprocess2.fastq")
output = run_commandline(cmd)
write_log("SICKLE", output)
if adapter != "":
cmd = "rm temp*.fq"
run_commandline(cmd)
#timelog(start_time,"sickle")
else:
stderr.write(arguments.input + "file not found\n")
exit_program()
return
def menu():
while True:
print("""
-------------------------------------------------------------------------
Metoda aproksymacji oparta o wielomiany Czebyszewa
Lukasz Janiszewski, Maciej Kubis""")
print("""
Wybierz opcję:
1. Rozpocznij program
2. Zakończ program""")
user_choice = int(input("""
Wybór: """))
if user_choice == 1:
data_load()
elif user_choice == 2:
exit_program()
else:
print("""Wybrano nieprawidlowa opcje!""")
print("Success")
succeeded += 1
else:
print(
f"Failed\nExpected: {test_info['expected']}\nGot: {output['roots']}"
)
failed += 1
print(common, "\n")
print(
f'Succeeded={succeeded} -> {succeeded/len(tests)*100}%\nFailed={failed} -> {failed/len(tests)*100}%'
)
while True:
expression = input("Input: ")
if expression:
if expression == "exit":
exit_program()
elif expression == "run tests":
run_test()
elif expression == "more":
more = not more
print("Turned On") if more else print("Turned Off")
else:
print(solve(expression)['roots'])
def _is_valid_stash(files):
for f in files:
if not os.access(f, os.R_OK):
print_message.PERMISSION_DENIED_STASH(f)
exit_program()
return True
while (not(is_valid_input)) :
print(menu_prompt)
user_operation_choice = input("Enter option:").lower()
if (user_operation_choice in valid_choices):
is_valid_input = True
else:
print("Invalid choice, please try again")
if (user_operation_choice == "a"):
message = input("Input your message:")
password = get_user_password()
result = encrypt(message, password)
elif (user_operation_choice == "b"):
ciphertext = input("Input the ciphertext in hexadecimal form (0x…) :")
password = get_user_password()
result = decrypt(ciphertext, password)
else:
print("Exiting Program ....")
exit_program(0)
print("Result: " + result)