def test_hpc_connection(user):
"""returns True/False after trying to connect to the cluster,
sets a flag if successful and returns True if flag is set as
True without testing the connection first"""
try:
hpcuser = MrTUser.objects.get(pk=user.id)
except MrTUser.DoesNotExist:
return False
# logger.debug(dir(hpcuser))
if hpcuser.testedConnection:
# logger.debug("testConnection = True")
return True
myHPC = hpc.hpc(secrets.hostname,
hpcuser.hpc_username,
queuetype="sge", authtype="key",
key=secrets.privatekey, keytype="rsa")
if myHPC.testConnection():
hpcuser.testedConnection = True
# logger.debug("tested for real: " + `hpcuser.testedConnection`)
hpcuser.save()
return True
else:
hpcuser.testedConnection = False
hpcuser.save()
return False
def updateStatus(self):
if self.jobstatus == "Finished" or self.jobstatus == "Retrieved":
return self.jobstatus
myHPC = hpc.hpc(secrets.hostname, self.user.hpc_username,
key=secrets.privatekey,
keytype=secrets.keytype)
(out, err) = myHPC.getOutputError(
"source /etc/profile;qstat -j " + self.hpcjobid)
if err.startswith("Following jobs do not exist"):
status = "Finished"
else:
lines = out.split("\n")
for line in lines:
if line.startswith("Following jobs do not exist"):
status = "Finished"
break
elif line.startswith("usage"):
status = "Running"
break
else:
status = "Queuing"
self.jobstatus = status
self.save()
return status
def _ensureHPC(self):
if self.myHPC == None or not self.myHPC.testConnection():
self.myHPC = hpc.hpc(secrets.hostname, self.username,
key=secrets.privatekey,
keytype=secrets.keytype)