box = DiffusionBox()
# Rates are listed in uM, from table S1
# k_off and kcat rates are already in s^-1; k_on needs to be converted.
rates = [
box.convert_membrane_rate(0.12),
3.0,
box.convert_membrane_rate(0.11),
0.4,
box.convert_membrane_rate(0.05),
0.1,
0.038,
box.convert_membrane_rate(0.07),
1.0,
0.003,
box.convert_cytosolic_rate(1.74),
0.2,
0.1,
0.01,
1.0,
0.01,
]
rates = Rates(*rates)
# We have used a intial Ras-GDP, and Ras-GAP concentrations of
# 75 molecules/(um)2, 125 molecules/(um)3 respectively.
ras = Ras(GDP=75)
rasgap = RasGAP(125)
rasgrp_final_vals, rasgrp_steady_states = [], []
rasgrp_counts = range(0, 200, 10)
