#!python
import sys
from subprocess import call
from reStUtil import *
from tecan_reader import parse
if __name__ == '__main__' :
p = parse(sys.argv[1])
for sheet, d in p.runs.items() :
print 'Processing',sheet
sheet_fn = '%s_run.rst'%sheet.replace(' ','_')
doc = ReStDocument(sheet_fn,title=sheet+' Tecan Reads')
label_plates = zip(d.get('labels',[]),d.get('plates',[]))
for label, plate in label_plates :
print plate
plot_fn = '%s_%s.png'%(sheet.replace(' ','_'),label.replace(' ','_'))
plate.plot_plate(''+plot_fn)
doc.add(ReStImage(plot_fn))
doc.write()
doc.close()
call('rst2pdf %s -o %s'%(sheet_fn,sheet_fn.replace('.rst','.pdf')),shell=True)
#!python
import sys
import numpy
from subprocess import call
from matplotlib.pyplot import *
from reStUtil import *
from tecan_reader import parse
if __name__ == "__main__":
p = parse("20120821_4hr.xlsx")
# these are the experiment and control wells for this specific run
expt = ("A9", "B9")
cntl = ("A10", "B10")
# first get the average OD
od_sheet = p.runs["OD Scan"]
od_scans = dict(zip(od_sheet["labels"], od_sheet["scans"]))
# we're gonna just pick 586, which I know to be index 3
od_scan = od_scans["OD Scan"][3]
print od_scan
# now do the Fluorescence Scan worksheet
fl_sheet = p.runs["Fluorescence Scan"]
import os
import sys
import numpy
from subprocess import call
from matplotlib.pyplot import *
from reStUtil import *
from tecan_reader import parse
if __name__ == '__main__' :
fn = 'All_FPs_intensity_scans.xlsx'
p = parse(fn)
print "found sheets: %s"%(', '.join(p.runs.keys()))
blank_plate1 = ('D1','E1')
blank_plate2 = ('A2','B2')
wt_plate1 = ('D2','E2')
wt_plate2 = ('C2','D2')
sn_ratios = {'RFP': (('D3','E3'),wt_plate1),
'mCherry': (('A6','B6'),wt_plate2),
'mOrange': (('D5','E5'),wt_plate1),
'YFP': (('D7','E7'),wt_plate1),
'Venus': (('D9','E9'),wt_plate1),
'EYFP': (('A8','B8'),wt_plate2),
'CFP': (('D11','E11'),wt_plate1),
