def example_reading_spec(self):
slim = contrib.slim()
data_fields, data_items_to_decoders = {}, {}
data_fields["image/feature"] = tf.FixedLenSequenceFeature(
(), tf.float32, allow_missing=True)
data_fields["image/spatial_feature"] = tf.FixedLenSequenceFeature(
(), tf.float32, allow_missing=True)
data_fields["image/image_id"] = tf.FixedLenFeature((), tf.int64)
data_fields["image/question_id"] = tf.FixedLenFeature((), tf.int64)
data_fields["image/question"] = tf.FixedLenSequenceFeature(
(), tf.int64, allow_missing=True)
data_fields["image/answer"] = tf.FixedLenSequenceFeature(
(), tf.int64, allow_missing=True)
data_items_to_decoders["inputs"] = slim.tfexample_decoder.Tensor(
"image/feature")
data_items_to_decoders["question_id"] = slim.tfexample_decoder.Tensor(
"image/question_id")
data_items_to_decoders["image_id"] = slim.tfexample_decoder.Tensor(
"image/image_id")
data_items_to_decoders["spatial_feature"] = slim.tfexample_decoder.Tensor(
"image/spatial_feature")
data_items_to_decoders["question"] = slim.tfexample_decoder.Tensor(
"image/question")
data_items_to_decoders["targets"] = slim.tfexample_decoder.Tensor(
"image/answer")
return data_fields, data_items_to_decoders
def build_tfrecord_pipeline(filenames):
"""Read TFRecords from disk to create data pipeline."""
sequence_feature = tf.FixedLenSequenceFeature([],
tf.int64,
allow_missing=True)
str_sequence_feature = tf.FixedLenSequenceFeature([],
tf.string,
allow_missing=True)
int_feature = tf.FixedLenFeature([], tf.int64)
str_feature = tf.FixedLenFeature([], tf.string)
features = {
'id': str_feature,
'num_answers': int_feature,
'answers': str_sequence_feature,
'answers_start_token': sequence_feature,
'answers_end_token': sequence_feature,
'context': str_feature,
'context_length': int_feature,
'context_tokens': str_sequence_feature,
'question': str_feature,
'question_length': int_feature,
'question_tokens': str_sequence_feature,
}
def _parse(proto):
return tf.parse_single_example(proto, features=features)
ds = tf.data.TFRecordDataset(
filenames,
# 1 GB
buffer_size=1024 * 1024 * 1024,
num_parallel_reads=8)
ds = ds.map(_parse, num_parallel_calls=16)
return ds
def parse_examples(serialized_example):
"""Make retrieval examples."""
feature_spec = dict(input_ids=tf.FixedLenSequenceFeature([], tf.int64,
True),
key=tf.FixedLenSequenceFeature([], tf.int64, True))
features = tf.parse_single_example(serialized_example, feature_spec)
features = {k: tf.cast(v, tf.int32) for k, v in features.items()}
block_ids, block_mask, block_segment_ids = pad_or_truncate_pair(
token_ids=features["input_ids"], sequence_length=FLAGS.block_seq_len)
key = tf.ensure_shape(features["key"], [1])
return dict(block_ids=block_ids,
block_mask=block_mask,
block_segment_ids=block_segment_ids,
key=key)
def example_reading_spec(self):
data_fields, data_items_to_decoders = (
super(ImageVqav2Tokens10kLabels3k, self).example_reading_spec())
data_fields["image/image_id"] = tf.FixedLenFeature((), tf.int64)
data_fields["image/question_id"] = tf.FixedLenFeature((), tf.int64)
data_fields["image/question"] = tf.FixedLenSequenceFeature(
(), tf.int64, allow_missing=True)
data_fields["image/answer"] = tf.FixedLenSequenceFeature(
(), tf.int64, allow_missing=True)
slim = contrib.slim()
data_items_to_decoders["question"] = slim.tfexample_decoder.Tensor(
"image/question")
data_items_to_decoders["targets"] = slim.tfexample_decoder.Tensor(
"image/answer")
return data_fields, data_items_to_decoders
def parse_example(serialized, image_feature, caption_feature):
"""Parses a tensorflow.SequenceExample into an image and caption.
Args:
serialized: A scalar string Tensor; a single serialized SequenceExample.
image_feature: Name of SequenceExample context feature containing image
data.
caption_feature: Name of SequenceExample feature list containing integer
captions.
Returns:
encoded_image: A scalar string Tensor containing a JPEG encoded image.
caption: A 1-D uint64 Tensor with dynamically specified length.
"""
parsed = tf.parse_single_example(serialized,
features={
image_feature:
tf.FixedLenFeature([],
dtype=tf.string),
caption_feature:
tf.FixedLenSequenceFeature(
shape=[],
dtype=tf.int64,
allow_missing=True),
})
encoded_image = parsed[image_feature]
caption = parsed[caption_feature]
# caption = tf.sparse_tensor_to_dense(caption, default_value=0)
return encoded_image, caption
def file_based_input_fn_builder(input_file, seq_length, fewshot_num_classes,
fewshot_num_examples_per_class,
drop_remainder):
"""Creates an `input_fn` closure to be passed to tf.Estimator."""
# Add one for the 'query' example.
fewshot_batch = fewshot_num_classes * fewshot_num_examples_per_class + 1
name_to_features = {
"input_ids": tf.FixedLenSequenceFeature([seq_length], tf.int64),
"input_mask": tf.FixedLenSequenceFeature([seq_length], tf.int64),
"segment_ids": tf.FixedLenSequenceFeature([seq_length], tf.int64),
"guid": tf.FixedLenSequenceFeature([], tf.string),
}
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
_, example = tf.parse_single_sequence_example(
record, sequence_features=name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
shape = tf.shape(example[name])
# sequence_examples come with dynamic/unknown dimension which we reshape
# to explicit dimension for the fewshot "batch" size.
example[name] = tf.reshape(
t, tf.concat([[fewshot_batch], shape[1:]], 0))
return example
def input_fn(params):
"""The actual input function."""
d = tf.data.TFRecordDataset(input_file)
d = d.apply(
tf.data.experimental.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=params["batch_size"],
drop_remainder=drop_remainder))
return d
return input_fn
def get_sequence_features(use_segment_ids, use_foreign_key_features,
string_alignment_features):
"""Gets sequence features (i.e., for input/output sequence to the model)."""
keys_to_sequence_features = {
constants.SOURCE_WORDPIECES_KEY:
tf.FixedLenSequenceFeature([], dtype=tf.int64),
constants.TARGET_ACTION_TYPES_KEY:
tf.FixedLenSequenceFeature([], dtype=tf.int64),
constants.TARGET_ACTION_IDS_KEY:
tf.FixedLenSequenceFeature([], dtype=tf.int64),
constants.COPIABLE_INPUT_KEY:
tf.FixedLenSequenceFeature([], dtype=tf.int64)
}
if use_segment_ids:
keys_to_sequence_features[
constants.SEGMENT_ID_KEY] = tf.FixedLenSequenceFeature(
[], dtype=tf.int64)
if use_foreign_key_features:
keys_to_sequence_features[
constants.FOREIGN_KEY_KEY] = tf.FixedLenSequenceFeature(
[], dtype=tf.int64)
if string_alignment_features:
keys_to_sequence_features[
constants.ALIGNED_KEY] = tf.FixedLenSequenceFeature([],
dtype=tf.int64)
return keys_to_sequence_features
def __init__(self):
"""Constructor sets keys_to_features and items_to_handlers."""
self.keys_to_context_features = {
'image/format': tf.FixedLenFeature((),
tf.string,
default_value='jpeg'),
'image/filename': tf.FixedLenFeature((),
tf.string,
default_value=''),
'image/key/sha256': tf.FixedLenFeature((),
tf.string,
default_value=''),
'image/source_id': tf.FixedLenFeature((),
tf.string,
default_value=''),
'image/height': tf.FixedLenFeature((), tf.int64, 1),
'image/width': tf.FixedLenFeature((), tf.int64, 1),
}
self.keys_to_features = {
'image/encoded': tf.FixedLenSequenceFeature((), tf.string),
'bbox/xmin': tf.VarLenFeature(dtype=tf.float32),
'bbox/xmax': tf.VarLenFeature(dtype=tf.float32),
'bbox/ymin': tf.VarLenFeature(dtype=tf.float32),
'bbox/ymax': tf.VarLenFeature(dtype=tf.float32),
'bbox/label/index': tf.VarLenFeature(dtype=tf.int64),
'bbox/label/string': tf.VarLenFeature(tf.string),
'area': tf.VarLenFeature(tf.float32),
'is_crowd': tf.VarLenFeature(tf.int64),
'difficult': tf.VarLenFeature(tf.int64),
'group_of': tf.VarLenFeature(tf.int64),
}
self.items_to_handlers = {
fields.InputDataFields.image:
tfexample_decoder.Image(image_key='image/encoded',
format_key='image/format',
channels=3,
repeated=True),
fields.InputDataFields.source_id:
(tfexample_decoder.Tensor('image/source_id')),
fields.InputDataFields.key:
(tfexample_decoder.Tensor('image/key/sha256')),
fields.InputDataFields.filename:
(tfexample_decoder.Tensor('image/filename')),
# Object boxes and classes.
fields.InputDataFields.groundtruth_boxes:
BoundingBoxSequence(prefix='bbox/'),
fields.InputDataFields.groundtruth_classes:
(tfexample_decoder.Tensor('bbox/label/index')),
fields.InputDataFields.groundtruth_area:
tfexample_decoder.Tensor('area'),
fields.InputDataFields.groundtruth_is_crowd:
(tfexample_decoder.Tensor('is_crowd')),
fields.InputDataFields.groundtruth_difficult:
(tfexample_decoder.Tensor('difficult')),
fields.InputDataFields.groundtruth_group_of:
(tfexample_decoder.Tensor('group_of'))
}
def parse_example(serialized_example):
"""Parse example."""
features = tf.parse_single_example(
serialized_example,
features={
"question":
tf.FixedLenFeature([], tf.string),
"context":
tf.FixedLenSequenceFeature(
dtype=tf.string, shape=[], allow_missing=True),
"long_answer_indices":
tf.FixedLenSequenceFeature(
dtype=tf.int64, shape=[], allow_missing=True)
})
features["question"] = features["question"]
features["context"] = features["context"]
features["long_answer_indices"] = tf.to_int32(features["long_answer_indices"])
return features
def parse_examples(serialized_example):
"""Make retrieval examples."""
feature_spec = dict(
title_ids=tf.FixedLenSequenceFeature([], tf.int64, True),
token_ids=tf.FixedLenSequenceFeature([], tf.int64, True))
features = tf.parse_single_example(serialized_example, feature_spec)
features = {k: tf.cast(v, tf.int32) for k, v in features.items()}
tokenizer = bert_utils.get_tokenizer(FLAGS.retriever_module_path)
cls_id, sep_id = tokenizer.convert_tokens_to_ids(["[CLS]", "[SEP]"])
block_ids, block_mask, block_segment_ids = bert_utils.pad_or_truncate_pair(
token_ids_a=features["title_ids"],
token_ids_b=features["token_ids"],
sequence_length=FLAGS.block_seq_len,
cls_id=cls_id,
sep_id=sep_id)
return dict(
block_ids=block_ids,
block_mask=block_mask,
block_segment_ids=block_segment_ids)
def maybe_map_bfloat(value):
"""Maps bfloat16 to float32."""
if is_bfloat_feature(value):
if isinstance(value, tf.FixedLenFeature):
return tf.FixedLenFeature(
value.shape, tf.float32, default_value=value.default_value)
elif isinstance(value, tf.VarLenFeature):
return tf.VarLenFeature(
value.shape, tf.float32, default_value=value.default_value)
else:
return tf.FixedLenSequenceFeature(
value.shape, tf.float32, default_value=value.default_value)
return value
def parse_tf_example(serialized):
# FixedLenSequenceFeature requires allow_missing to be True, even though we
# can't actually handle those cases.
feature_spec = {
'title':
tf.FixedLenSequenceFeature([], tf.string, allow_missing=True),
'text':
tf.FixedLenSequenceFeature([], tf.string, allow_missing=True),
'title_token_ids':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'body_token_ids':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
}
features = tf.parse_single_example(serialized, feature_spec)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(features.keys()):
tensor = features[name]
if tensor.dtype == tf.int64:
tensor = tf.cast(tensor, tf.int32)
features[name] = tensor
return features
def parse_tf_example(example_proto):
"""Converts tf.Example proto to dict of Tensors.
Args:
example_proto: A raw tf.Example proto.
Returns:
A dict of Tensors with fields structure, reward, and batch_index.
"""
feature_description = dict(structure=tf.FixedLenSequenceFeature(
(), tf.int64, allow_missing=True),
reward=tf.FixedLenFeature([1], tf.float32),
batch_index=tf.FixedLenFeature([1], tf.int64))
return tf.io.parse_single_example(serialized=example_proto,
features=feature_description)
def parse_and_preprocess(self, example_proto):
"""
Returns:
image: a float tensor with shape [height, width, 3],
an RGB image with pixel values in the range [0, 1].
boxes: a float tensor with shape [num_boxes, 4].
num_boxes: an int tensor with shape [].
"""
features = {
'image': tf.FixedLenFeature([], tf.string),
'num_persons': tf.FixedLenFeature([], tf.int64),
'boxes': tf.FixedLenSequenceFeature([],
tf.float32,
allow_missing=True)
}
parsed_features = tf.parse_single_example(example_proto, features)
# get an image
image = tf.image.decode_jpeg(parsed_features['image'], channels=3)
image = tf.image.convert_image_dtype(image, tf.float32)
# now pixel values are scaled to the [0, 1] range
# get number of people on the image
num_boxes = tf.to_int32(parsed_features['num_persons'])
# it is assumed that num_boxes > 0
# get groundtruth boxes, they are in absolute coordinates
boxes = tf.reshape(parsed_features['boxes'], [num_boxes, 4])
# to the [0, 1] range
height, width = tf.shape(image)[0], tf.shape(image)[1]
scaler = tf.to_float(tf.stack([height, width, height, width]))
boxes /= scaler
if self.is_training:
image, boxes = augmentation(image, boxes, self.image_size)
else:
image, boxes = resize_keeping_aspect_ratio(image, boxes,
self.min_dimension,
DIVISOR)
# it could change after augmentations
num_boxes = tf.shape(boxes)[0]
features = {'images': image}
labels = {'boxes': boxes, 'num_boxes': num_boxes}
return features, labels
def extract_fn(data_record):
features = {
"input_ids":
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
"tokens_a_len":
tf.FixedLenFeature([], tf.int64),
"tokens_ids_lens":
tf.FixedLenFeature([max_num_segments_perdoc], tf.int64),
"num_segments":
tf.FixedLenFeature([], tf.int64),
"label":
tf.FixedLenFeature([], tf.int64)
}
sample = tf.parse_single_example(data_record, features)
tokens_a_len = sample.pop("tokens_a_len")
tokens_ids_lens = sample.pop("tokens_ids_lens")
# 0 0 0 ... 1 1 1 1 ...
segment_ids = 1 - tf.sequence_mask(
tokens_a_len, max_seq_length, dtype=tf.int32)
segment_ids = tf.tile(tf.expand_dims(segment_ids, axis=0),
multiples=[max_num_segments_perdoc, 1])
# 1 1 1 1 ... 0 0 0 ...
input_mask = tf.sequence_mask(tokens_ids_lens,
max_seq_length,
dtype=tf.int32)
sample.update({
"segment_ids": segment_ids,
"input_mask": input_mask
})
sample["input_ids"] = tf.reshape(sample["input_ids"],
shape=[-1, max_seq_length])
# the extracted features are exactly what we want, no need for data convertion, hence return
# before return, convert to tf.int32 for TPU
for key, val in sample.items():
sample[key] = tf.cast(sample[key], tf.int32)
return sample
def parse_visual(data):
'''function to transform a tfrecord file into a parsed example'''
dataset = tf.data.TFRecordDataset(data)
# pattern for one part file
# dataset = tf.data.TFRecordDataset('part-r-00099')
iterator = dataset.make_one_shot_iterator()
features = {
'B1': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B2': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B3': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B4': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B5': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B6': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B7': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B8': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B9': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B10': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True),
'B11': tf.FixedLenSequenceFeature([65], tf.int64, allow_missing=True)
}
parsed_examples = [
tf.parse_single_example(data, features) for data in iterator
]
return parsed_examples
def get_padded_batch(file_list, batch_size, input_size, label_shape=None,
num_enqueuing_threads=4, shuffle=False):
"""Reads batches of SequenceExamples from TFRecords and pads them.
Can deal with variable length SequenceExamples by padding each batch to the
length of the longest sequence with zeros.
Args:
file_list: A list of paths to TFRecord files containing SequenceExamples.
batch_size: The number of SequenceExamples to include in each batch.
input_size: The size of each input vector. The returned batch of inputs
will have a shape [batch_size, num_steps, input_size].
label_shape: Shape for labels. If not specified, will use [].
num_enqueuing_threads: The number of threads to use for enqueuing
SequenceExamples.
shuffle: Whether to shuffle the batches.
Returns:
inputs: A tensor of shape [batch_size, num_steps, input_size] of floats32s.
labels: A tensor of shape [batch_size, num_steps] of int64s.
lengths: A tensor of shape [batch_size] of int32s. The lengths of each
SequenceExample before padding.
Raises:
ValueError: If `shuffle` is True and `num_enqueuing_threads` is less than 2.
"""
file_queue = tf.train.string_input_producer(file_list)
reader = tf.TFRecordReader()
_, serialized_example = reader.read(file_queue)
sequence_features = {
'inputs': tf.FixedLenSequenceFeature(shape=[input_size],
dtype=tf.float32),
'labels': tf.FixedLenSequenceFeature(shape=label_shape or [],
dtype=tf.int64)}
_, sequence = tf.parse_single_sequence_example(
serialized_example, sequence_features=sequence_features)
length = tf.shape(sequence['inputs'])[0]
input_tensors = [sequence['inputs'], sequence['labels'], length]
if shuffle:
if num_enqueuing_threads < 2:
raise ValueError(
'`num_enqueuing_threads` must be at least 2 when shuffling.')
shuffle_threads = int(math.ceil(num_enqueuing_threads) / 2.)
# Since there may be fewer records than SHUFFLE_MIN_AFTER_DEQUEUE, take the
# minimum of that number and the number of records.
min_after_dequeue = count_records(
file_list, stop_at=SHUFFLE_MIN_AFTER_DEQUEUE)
input_tensors = _shuffle_inputs(
input_tensors, capacity=QUEUE_CAPACITY,
min_after_dequeue=min_after_dequeue,
num_threads=shuffle_threads)
num_enqueuing_threads -= shuffle_threads
tf.logging.info(input_tensors)
return tf.train.batch(
input_tensors,
batch_size=batch_size,
capacity=QUEUE_CAPACITY,
num_threads=num_enqueuing_threads,
dynamic_pad=True,
allow_smaller_final_batch=False)
def get_retrieval_examples(serialized_example, mask_rate, bert_hub_module_path,
query_seq_len, block_seq_len):
"""Make retrieval examples."""
feature_spec = dict(title_ids=tf.FixedLenSequenceFeature([], tf.int64,
True),
token_ids=tf.FixedLenSequenceFeature([], tf.int64,
True),
sentence_starts=tf.FixedLenSequenceFeature([],
tf.int64,
True))
features = tf.parse_single_example(serialized_example, feature_spec)
features = {k: tf.cast(v, tf.int32) for k, v in features.items()}
title_ids = features["title_ids"]
token_ids = features["token_ids"]
sentence_starts = features["sentence_starts"]
sentence_ends = tf.concat([sentence_starts[1:], [tf.size(token_ids)]], 0)
tokenizer = bert_utils.get_tokenizer(bert_hub_module_path)
cls_id, sep_id = tokenizer.convert_tokens_to_ids(["[CLS]", "[SEP]"])
# Randomly choose a sentence and pretend that it is a query.
query_index = tf.random.uniform(shape=[],
minval=0,
maxval=tf.size(sentence_starts),
dtype=tf.int32)
query_start = sentence_starts[query_index]
query_end = sentence_ends[query_index]
query_ids = token_ids[query_start:query_end]
mask_query = tf.less(tf.random.uniform([]), mask_rate)
def _apply_mask():
return tf.concat([token_ids[:query_start], token_ids[query_end:]], 0)
block_ids = tf.cond(pred=mask_query,
true_fn=_apply_mask,
false_fn=lambda: token_ids)
query_ids, query_mask = bert_utils.pad_or_truncate(
token_ids=query_ids,
sequence_length=query_seq_len,
cls_id=cls_id,
sep_id=sep_id)
block_ids, block_mask, block_segment_ids = bert_utils.pad_or_truncate_pair(
token_ids_a=title_ids,
token_ids_b=block_ids,
sequence_length=block_seq_len,
cls_id=cls_id,
sep_id=sep_id)
# Masked examples for single-sentence blocks don't make any sense.
keep_example = tf.logical_or(tf.logical_not(mask_query),
tf.greater(tf.size(sentence_starts), 1))
return dict(keep_example=keep_example,
mask_query=mask_query,
query_ids=query_ids,
query_mask=query_mask,
block_ids=block_ids,
block_mask=block_mask,
block_segment_ids=block_segment_ids)
def _make_parsing_fn(mode, label_name, include_age,
categorical_context_features, sequence_features,
time_crossed_features):
"""Creates an input function to an estimator.
Args:
mode: The execution mode, as defined in tf.estimator.ModeKeys.
label_name: Name of the label present as context feature in the
SequenceExamples.
include_age: Whether to include the age_in_years as a feature.
categorical_context_features: List of string context features that are valid
keys in the tf.SequenceExample.
sequence_features: List of sequence features (strings) that are valid keys
in the tf.SequenceExample.
time_crossed_features: List of list of sequence features (strings) that
should be crossed at each step along the time dimension.
Returns:
Two dictionaries with the parsing config for the context features and
sequence features.
"""
sequence_features_config = dict()
for feature in sequence_features:
dtype = tf.string
if feature == 'Observation.value.quantity.value':
dtype = tf.float32
sequence_features_config[feature] = tf.VarLenFeature(dtype)
sequence_features_config['eventId'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=False)
for cross in time_crossed_features:
for feature in cross:
dtype = tf.string
if feature == 'Observation.value.quantity.value':
dtype = tf.float32
sequence_features_config[feature] = tf.VarLenFeature(dtype)
context_features_config = dict()
if include_age:
context_features_config['timestamp'] = tf.FixedLenFeature(
[], tf.int64, default_value=-1)
context_features_config['Patient.birthDate'] = tf.FixedLenFeature(
[], tf.int64, default_value=-1)
context_features_config['sequenceLength'] = tf.FixedLenFeature(
[], tf.int64, default_value=-1)
for context_feature in categorical_context_features:
context_features_config[context_feature] = tf.VarLenFeature(tf.string)
if mode != tf.estimator.ModeKeys.PREDICT:
context_features_config[label_name] = tf.FixedLenFeature(
[], tf.string, default_value='MISSING')
def _parse_fn_old(serialized_example):
"""Parses tf.(Sparse)Tensors from the serialized tf.SequenceExample.
Also works with TF versions < 1.12 but is slower than _parse_fn_new.
Args:
serialized_example: A single serialized tf.SequenceExample.
Returns:
A dictionary from name to (Sparse)Tensors of the context and sequence
features.
"""
context, sequence = tf.parse_single_sequence_example(
serialized_example,
context_features=context_features_config,
sequence_features=sequence_features_config,
example_name='parsing_examples')
feature_map = dict()
for k, v in context.items():
feature_map[CONTEXT_KEY_PREFIX + k] = v
for k, v in sequence.items():
feature_map[SEQUENCE_KEY_PREFIX + k] = v
return feature_map
def _parse_fn_new(serialized_examples):
"""Parses tf.(Sparse)Tensors from the serialized tf.SequenceExamples.
Requires TF versions >= 1.12 but is faster than _parse_fn_old.
Args:
serialized_examples: A batch of serialized tf.SequenceExamples.
Returns:
A dictionary from name to (Sparse)Tensors of the context and sequence
features.
"""
context, sequence, _ = tf.io.parse_sequence_example(
serialized_examples,
context_features=context_features_config,
sequence_features=sequence_features_config,
name='parse_sequence_example')
feature_map = dict()
for k, v in context.items():
feature_map[CONTEXT_KEY_PREFIX + k] = v
for k, v in sequence.items():
feature_map[SEQUENCE_KEY_PREFIX + k] = v
return feature_map
parse_fn = _parse_fn_new if tf.__version__ >= '1.12.0' else _parse_fn_old
return parse_fn
def parse_and_preprocess(self, example_proto):
"""
Returns:
crops: a float tensor with shape [num_persons, height, width, 17].
labels: a float tensor with shape [num_persons, height, width, 17].
"""
features = {
'image':
tf.FixedLenFeature([], tf.string),
'num_persons':
tf.FixedLenFeature([], tf.int64),
'boxes':
tf.FixedLenSequenceFeature([], tf.float32, allow_missing=True),
'keypoints':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True)
}
parsed_features = tf.parse_single_example(example_proto, features)
# get size of the image
shape = tf.image.extract_jpeg_shape(parsed_features['image'])
image_height, image_width = shape[0], shape[1]
scaler = tf.to_float(tf.stack(2 * [image_height, image_width]))
# get number of people on the image
num_persons = tf.to_int32(parsed_features['num_persons'])
# it is assumed that num_persons > 0
# get groundtruth boxes, they are in absolute coordinates
boxes = tf.reshape(parsed_features['boxes'], [num_persons, 4])
# get keypoints, they are in absolute coordinates
keypoints = tf.to_int32(parsed_features['keypoints'])
keypoints = tf.reshape(keypoints, [num_persons, 17, 3])
if self.max_keypoints is not None:
# curriculum learning by sorting
# annotations based on number of keypoints
is_visible = tf.to_int32(
keypoints[:, :, 2] > 0) # shape [num_persons, 17]
is_good = tf.less_equal(tf.reduce_sum(is_visible, axis=1),
self.max_keypoints)
# it has shape [num_persons]
keypoints = tf.boolean_mask(keypoints, is_good)
boxes = tf.boolean_mask(boxes, is_good)
num_persons = tf.shape(boxes)[0]
heatmaps = tf.py_func(
lambda k, b, w, h: get_heatmaps(k, b, w, h, DOWNSAMPLE),
[keypoints, boxes, image_width, image_height],
tf.float32,
stateful=False)
heatmaps.set_shape([None, None, 17])
box_indices = tf.zeros([num_persons], dtype=tf.int32)
crops = tf.image.crop_and_resize(tf.expand_dims(heatmaps, 0),
boxes / scaler,
box_indices,
crop_size=CROP_SIZE)
def fn(x):
"""
Arguments:
keypoints: a float tensor with shape [17, 3].
box: a float tensor with shape [4].
Returns:
a float tensor with shape [height, width, 17].
"""
keypoints, box = x
ymin, xmin, ymax, xmax = tf.unstack(box, axis=0)
y, x, v = tf.unstack(keypoints, axis=1)
keypoints = tf.stack([y, x], axis=1)
part_id = tf.where(v > 0.0) # shape [num_visible, 1]
part_id = tf.to_int32(part_id)
num_visible = tf.shape(part_id)[0]
keypoints = tf.gather(keypoints, tf.squeeze(part_id, 1))
# it has shape [num_visible, 2], they have absolute coordinates
# transform keypoints coordinates
# to be relative to the box
h, w = ymax - ymin, xmax - xmin
height, width = CROP_SIZE
translation = tf.stack([ymin, xmin])
scaler = tf.to_float(tf.stack([height / h, width / w], axis=0))
keypoints -= translation
keypoints *= scaler
keypoints = tf.to_int32(tf.round(keypoints))
# it has shape [num_visible, 2]
y, x = tf.unstack(keypoints, axis=1)
y = tf.clip_by_value(y, 0, height - 1)
x = tf.clip_by_value(x, 0, width - 1)
keypoints = tf.stack([y, x], axis=1)
indices = tf.to_int64(tf.concat([keypoints, part_id], axis=1))
values = tf.ones([num_visible], dtype=tf.float32)
binary_map = tf.sparse.SparseTensor(
indices, values, dense_shape=[height, width, 17])
binary_map = tf.sparse.to_dense(binary_map,
default_value=0,
validate_indices=False)
return binary_map
labels = tf.map_fn(
fn,
(tf.to_float(keypoints), boxes),
dtype=tf.float32,
back_prop=False,
)
if self.is_training:
crops, labels = random_flip_left_right(crops, labels)
return crops, labels
def parse(self, example_proto):
"""
Returns:
image: a float tensor with shape [height, width, 3],
an RGB image with pixel values in the range [0, 1].
masks: a float tensor with shape [height / DOWNSAMPLE, width / DOWNSAMPLE, 2].
boxes: a float tensor with shape [num_persons, 4], in absolute coordinates.
keypoints: an int tensor with shape [num_persons, 17, 3], in absolute coordinates.
"""
features = {
'image':
tf.FixedLenFeature([], tf.string),
'num_persons':
tf.FixedLenFeature([], tf.int64),
'boxes':
tf.FixedLenSequenceFeature([], tf.float32, allow_missing=True),
'keypoints':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'masks':
tf.FixedLenFeature([], tf.string)
}
parsed_features = tf.parse_single_example(example_proto, features)
# get an image
image = tf.image.decode_jpeg(parsed_features['image'], channels=3)
image = tf.image.convert_image_dtype(image, tf.float32)
# now pixel values are scaled to the [0, 1] range
# get number of people on the image
num_persons = tf.to_int32(parsed_features['num_persons'])
# it is assumed that num_persons > 0
# get groundtruth boxes, they are in absolute coordinates
boxes = tf.reshape(parsed_features['boxes'], [num_persons, 4])
# they are used to guide the data augmentation (when doing a random crop)
# and to choose sigmas for gaussian blobs
# get keypoints, they are in absolute coordinates
keypoints = tf.to_int32(parsed_features['keypoints'])
keypoints = tf.reshape(keypoints, [num_persons, 17, 3])
# get size of masks, they are downsampled
shape = tf.shape(image)
image_height, image_width = shape[0], shape[1]
masks_height = tf.to_int32(tf.ceil(image_height / DOWNSAMPLE))
masks_width = tf.to_int32(tf.ceil(image_width / DOWNSAMPLE))
# (we use the 'SAME' padding in the networks)
# get masks (loss and segmentation masks)
masks = tf.decode_raw(parsed_features['masks'], tf.uint8)
# unpack bits (reverse np.packbits)
b = tf.constant([128, 64, 32, 16, 8, 4, 2, 1], dtype=tf.uint8)
masks = tf.reshape(tf.bitwise.bitwise_and(masks[:, None], b), [-1])
masks = masks[:(masks_height * masks_width * 2)]
masks = tf.cast(masks > 0, tf.uint8)
# reshape to the initial form
masks = tf.reshape(masks, [masks_height, masks_width, 2])
masks = tf.to_float(masks) # it has binary values only
return image, masks, boxes, keypoints
def __init__(self,
label_map_proto_file,
load_context_features=False,
use_display_name=False,
fully_annotated=False):
"""Constructs `TfSequenceExampleDecoder` object.
Args:
label_map_proto_file: a file path to a
nets.protos.StringIntLabelMap proto. The
label map will be used to map IDs of 'region/label/string'.
It is assumed that 'region/label/string' will be in the data.
load_context_features: Whether to load information from context_features,
to provide additional context to a detection model for training and/or
inference
use_display_name: whether or not to use the `display_name` for label
mapping (instead of `name`). Only used if label_map_proto_file is
provided.
fully_annotated: If True, will assume that every frame (whether it has
boxes or not), has been fully annotated. If False, a
'region/is_annotated' field must be provided in the dataset which
indicates which frames have annotations. Default False.
"""
# Specifies how the tf.SequenceExamples are decoded.
self._context_keys_to_features = {
'image/format': tf.FixedLenFeature((),
tf.string,
default_value='jpeg'),
'image/height': tf.FixedLenFeature((), tf.int64),
'image/width': tf.FixedLenFeature((), tf.int64),
}
self._sequence_keys_to_feature_lists = {
'image/encoded': tf.FixedLenSequenceFeature([], dtype=tf.string),
'image/source_id': tf.FixedLenSequenceFeature([], dtype=tf.string),
'region/bbox/xmin': tf.VarLenFeature(dtype=tf.float32),
'region/bbox/xmax': tf.VarLenFeature(dtype=tf.float32),
'region/bbox/ymin': tf.VarLenFeature(dtype=tf.float32),
'region/bbox/ymax': tf.VarLenFeature(dtype=tf.float32),
'region/label/string': tf.VarLenFeature(dtype=tf.string),
'region/label/confidence': tf.VarLenFeature(dtype=tf.float32),
}
self._items_to_handlers = {
# Context.
fields.InputDataFields.image_height:
slim_example_decoder.Tensor('image/height'),
fields.InputDataFields.image_width:
slim_example_decoder.Tensor('image/width'),
# Sequence.
fields.InputDataFields.num_groundtruth_boxes:
slim_example_decoder.NumBoxesSequence('region/bbox/xmin'),
fields.InputDataFields.groundtruth_boxes:
slim_example_decoder.BoundingBoxSequence(prefix='region/bbox/',
default_value=0.0),
fields.InputDataFields.groundtruth_weights:
slim_example_decoder.Tensor('region/label/confidence'),
}
# If the dataset is sparsely annotated, parse sequence features which
# indicate which frames have been labeled.
if not fully_annotated:
self._sequence_keys_to_feature_lists['region/is_annotated'] = (
tf.FixedLenSequenceFeature([], dtype=tf.int64))
self._items_to_handlers[fields.InputDataFields.is_annotated] = (
slim_example_decoder.Tensor('region/is_annotated'))
self._items_to_handlers[fields.InputDataFields.image] = (
slim_example_decoder.Tensor('image/encoded'))
self._items_to_handlers[fields.InputDataFields.source_id] = (
slim_example_decoder.Tensor('image/source_id'))
label_handler = _ClassTensorHandler('region/label/string',
label_map_proto_file,
default_value='')
self._items_to_handlers[
fields.InputDataFields.groundtruth_classes] = label_handler
if load_context_features:
self._context_keys_to_features['image/context_features'] = (
tf.VarLenFeature(dtype=tf.float32))
self._items_to_handlers[
fields.InputDataFields.context_features] = (
slim_example_decoder.ItemHandlerCallback([
'image/context_features',
'image/context_feature_length'
], self._reshape_context_features))
self._context_keys_to_features['image/context_feature_length'] = (
tf.FixedLenFeature((), tf.int64))
self._items_to_handlers[
fields.InputDataFields.context_feature_length] = (
slim_example_decoder.Tensor('image/context_feature_length')
)
self._fully_annotated = fully_annotated
def parse_tf_example(example_proto,
data_source,
max_range=100,
max_dom_pos=2000,
max_pixel_pos=100,
load_dom_dist=False,
load_extra=False,
append_eos=True,
load_screen=True):
"""Parses an example TFRecord proto into dictionary of tensors.
Args:
example_proto: TFRecord format proto that contains screen information.
data_source: A DataSource instance.
max_range: the max range.
max_dom_pos: the maximum dom positoin.
max_pixel_pos: the max dom position.
load_dom_dist: whether to load the feature.
load_extra: whether to load the extra data for debugging.
append_eos: whether to append eos.
load_screen: whether to load screen features.
Returns:
feature: The parsed tensor dictionary with the input feature data
label: The parsed label tensor with the input label for the feature
"""
feature_spec = {
'instruction_word_id_seq':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'input_str_position_seq':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'obj_desc_position_seq':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'verb_str_position_seq':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'agreement_count':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True),
'instruction_rule_id':
tf.FixedLenSequenceFeature([], tf.int64, allow_missing=True)
}
if load_screen:
feature_spec['verb_id_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
feature_spec['ui_target_id_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
feature_spec['ui_obj_word_id_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
feature_spec['ui_obj_type_id_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
feature_spec['ui_obj_clickable_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
feature_spec['ui_obj_cord_x_seq'] = tf.FixedLenSequenceFeature(
[], tf.float32, allow_missing=True)
feature_spec['ui_obj_cord_y_seq'] = tf.FixedLenSequenceFeature(
[], tf.float32, allow_missing=True)
feature_spec['ui_obj_dom_location_seq'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
if load_dom_dist:
feature_spec['ui_obj_dom_distance'] = tf.FixedLenSequenceFeature(
[], tf.int64, allow_missing=True)
if load_extra:
feature_spec['instruction_str'] = tf.FixedLenSequenceFeature(
[], tf.string, allow_missing=True)
feature_spec['task_id'] = tf.FixedLenSequenceFeature(
[], tf.string, allow_missing=True)
feature_spec['ui_obj_str_seq'] = tf.FixedLenSequenceFeature(
[], tf.string, allow_missing=True)
feature_dict = tf.parse_single_example(example_proto, feature_spec)
for key in feature_dict:
if feature_dict[key].dtype == tf.int64:
feature_dict[key] = tf.cast(feature_dict[key], tf.int32)
if data_source == DataSource.ANDROID_HOWTO:
tf.logging.info('Parsing android_howto dataset')
feature = _process_android_howto(feature_dict,
max_range=max_range,
load_dom_dist=load_dom_dist,
load_extra=load_extra)
elif data_source == DataSource.RICO_SCA:
tf.logging.info('Parsing synthetic dataset')
feature = _process_rico_sca(feature_dict,
max_range=max_range,
max_dom_pos=max_dom_pos,
load_dom_dist=load_dom_dist,
load_extra=load_extra,
load_screen=load_screen)
elif data_source == DataSource.PIXEL_HELP:
tf.logging.info('Parsing test dataset')
feature = _process_pixel_help(feature_dict,
data_source,
load_dom_dist=load_dom_dist,
load_extra=load_extra)
else:
raise ValueError('Unsupported datasource %s' % str(data_source))
# Remove padding from "task"
feature['task'] = tf.boolean_mask(feature['task'],
tf.not_equal(feature['task'], 0))
feature['obj_screen_pos'] = tf.to_int32(feature['obj_screen_pos'] *
(max_pixel_pos - 1))
# Appending EOS and padding to match the appended length
if append_eos:
feature['input_refs'] = tf.pad(feature['input_refs'], [[0, 1], [0, 0]])
feature['obj_refs'] = tf.pad(feature['obj_refs'], [[0, 1], [0, 0]])
step_num = tf.size(feature['task'])
feature['verb_refs'] = tf.concat(
[feature['verb_refs'], [[step_num, step_num + 1]]], axis=0)
feature['task'] = tf.pad(feature['task'], [[0, 1]], constant_values=1)
feature['obj_text'] = tf.pad(feature['obj_text'],
[[0, 1], [0, 0], [0, 0]])
feature['obj_clickable'] = tf.pad(feature['obj_clickable'],
[[0, 1], [0, 0]])
feature['obj_type'] = tf.pad(feature['obj_type'], [[0, 1], [0, 0]],
constant_values=-1)
feature['obj_screen_pos'] = tf.pad(feature['obj_screen_pos'],
[[0, 1], [0, 0], [0, 0]])
feature['obj_dom_pos'] = tf.pad(feature['obj_dom_pos'],
[[0, 1], [0, 0], [0, 0]])
if load_dom_dist:
feature['obj_dom_dist'] = tf.pad(feature['obj_dom_dist'],
[[0, 1], [0, 0], [0, 0]])
feature['objects'] = tf.pad(feature['objects'], [[0, 1]])
feature['verbs'] = tf.pad(feature['verbs'], [[0, 1]])
return feature
Args:
filename (pathlib.Path): a path to a folder of frames
which make up a video.
Returns:
np.array(): matrix contents of the video
"""
data = np.stack([plt.imread(frame_path) \
for frame_path in filename.iterdir()])
return data
# Decoding functions
sequence_features = {
'video_frames': tf.FixedLenSequenceFeature([], dtype=tf.string)
}
context_features = {
'filename': tf.io.FixedLenFeature([], tf.string),
'height': tf.io.FixedLenFeature([], tf.int64),
'width': tf.io.FixedLenFeature([], tf.int64),
'depth': tf.io.FixedLenFeature([], tf.int64),
'temporal': tf.io.FixedLenFeature([], tf.int64),
'label': tf.io.FixedLenFeature([], tf.int64),
}
def parse_example(example_proto):
"""Decodes a TFRecords example
def _parse_function(*args):
"""Parses the tf example."""
serialized_example = args[-1]
context_feature_names = {
dataset_descriptor.image_id: tf.FixedLenFeature([], tf.string),
}
sequence_feature_names = {}
if flags.use_ref_exp:
context_feature_names[REF_EXP_ID] = tf.FixedLenFeature([],
tf.string)
if flags.use_labels:
if dataset_descriptor.has_candidate:
context_feature_names[
SELECTED_CANDIDATE_ID] = tf.FixedLenFeature([], tf.int64)
sequence_feature_names[
ELEMENTS_MASK_ID] = tf.FixedLenSequenceFeature([],
tf.string)
else:
context_feature_names[
dataset_descriptor.label_id] = tf.FixedLenFeature(
[], tf.string)
if dataset_descriptor.has_elements_boxes:
sequence_feature_names[
dataset_descriptor.
elements_box_id] = tf.FixedLenSequenceFeature([4],
dtype=tf.float32)
if flags.use_elements_texts:
sequence_feature_names[
dataset_descriptor.
elements_text_id] = tf.FixedLenSequenceFeature([],
dtype=tf.string)
if flags.use_elements_neighbors:
sequence_feature_names[
ELEMENTS_NEIGHBORS_ID] = tf.FixedLenSequenceFeature(
[], dtype=tf.string)
if flags.use_elements_ref_match:
sequence_feature_names[
ELEMENTS_REF_MATCH_ID] = tf.FixedLenSequenceFeature(
[], dtype=tf.string)
if flags.use_groundtruth_box:
context_feature_names[GROUNDTRUTH_XMIN_ID] = tf.FixedLenFeature(
[], tf.float32)
context_feature_names[GROUNDTRUTH_XMAX_ID] = tf.FixedLenFeature(
[], tf.float32)
context_feature_names[GROUNDTRUTH_YMIN_ID] = tf.FixedLenFeature(
[], tf.float32)
context_feature_names[GROUNDTRUTH_YMAX_ID] = tf.FixedLenFeature(
[], tf.float32)
context_features, sequence_features = tf.parse_single_sequence_example(
serialized_example,
context_features=context_feature_names,
sequence_features=sequence_feature_names,
)
features.update(context_features)
features.update(sequence_features)
if flags.use_elements_texts:
features[ELEMENTS_TEXT_ID] = features.pop(
dataset_descriptor.elements_text_id)
if dataset_descriptor.has_elements_boxes:
features[ELEMENTS_BOX_ID] = features.pop(
dataset_descriptor.elements_box_id)
image = features.pop(dataset_descriptor.image_id)
image = tf.image.decode_image(image, channels=3)
image = tf.cast(image, tf.float32)
mean_pixel = tf.reshape(
feature_extractor.mean_pixel(flags.model_variant), [1, 1, 3])
features[IMAGE_PAD_WEIGHTS_ID] = tf.ones_like(image[:, :, 0:1])
features[IMAGE_PAD_WEIGHTS_ID] = resize_im(
features[IMAGE_PAD_WEIGHTS_ID], flags.image_size, 0, 1)
features[IMAGE_PAD_WEIGHTS_ID] = tf.squeeze(
features[IMAGE_PAD_WEIGHTS_ID], 2)
if dataset_descriptor.has_elements_boxes:
image = resize_im(image, flags.image_size, mean_pixel, 3, features)
else:
image = resize_im(image, flags.image_size, mean_pixel, 3)
if flags.use_labels:
if dataset_descriptor.has_candidate:
features[ELEMENTS_MASK_ID] = tf.map_fn(
process_label,
features.pop(ELEMENTS_MASK_ID),
parallel_iterations=128,
dtype=tf.int32,
name="mask_map")
features[LABEL_ID] = tf.gather_nd(
features[ELEMENTS_MASK_ID],
[features[SELECTED_CANDIDATE_ID]])
else:
label = features.pop(dataset_descriptor.label_id)
label = process_label(label)
features[LABEL_ID] = label
if flags.use_elements_texts:
features[ELEMENTS_EXIST_ID] = tf.ones_like(
features[ELEMENTS_TEXT_ID], dtype=tf.int32)
elif dataset_descriptor.has_elements_boxes:
features[ELEMENTS_EXIST_ID] = tf.ones(tf.shape(
features[ELEMENTS_BOX_ID])[:1],
dtype=tf.int32)
if flags.use_elements_neighbors:
features[ELEMENTS_NEIGHBORS_ID] = convert_string_neighbors(
features[ELEMENTS_NEIGHBORS_ID])
features[IMAGE_ID] = image
return features
TRAIN_FOLD = 'train'
ALL_FOLD = '*'
DATA_FOLD_VALUES = [TRAIN_FOLD, DEV_FOLD, TEST_FOLD, ALL_FOLD]
SEQUENCE_KEY = 'sequence'
SEQUENCE_LENGTH_KEY = 'sequence_length'
SEQUENCE_ID_KEY = 'id'
LABEL_KEY = 'label'
DATASET_FEATURES = {
SEQUENCE_KEY:
tf.FixedLenFeature([], tf.string),
LABEL_KEY:
tf.FixedLenSequenceFeature(
[],
dtype=tf.string,
# Some sequences have no labels.
allow_missing=True),
SEQUENCE_ID_KEY:
tf.FixedLenFeature([], tf.string)
}
MAX_SEQUENCE_LENGTH = 12000
BUCKET_BOUNDARIES = [1500, 3000, 6000]
def _map_sequence_to_ints(example, amino_acid_table):
"""Take amino acids in features as strings and replaces them with ints.
Args:
example: dictionary from string to tensor, containing key
SEQUENCE_KEY.
def _parse_function(self, sequence_example_proto):
"""Parse a SequenceExample in the AutoDL/TensorFlow format.
Args:
sequence_example_proto: a SequenceExample with "x_dense_input" or sparse
input representation.
Returns:
An array of tensors. For first edition of AutoDl challenge, returns a
pair `(features, labels)` where `features` is a Tensor of shape
[sequence_size, row_count, col_count, num_channels]
and `labels` a Tensor of shape
[output_dim, ]
"""
sequence_features = {}
for i in range(self.metadata_.get_bundle_size()):
if self.metadata_.is_sparse(i):
sequence_features[self._feature_key(
i, "sparse_col_index")] = tf.VarLenFeature(tf.int64)
sequence_features[self._feature_key(
i, "sparse_row_index")] = tf.VarLenFeature(tf.int64)
sequence_features[self._feature_key(
i, "sparse_channel_index")] = tf.VarLenFeature(tf.int64)
sequence_features[self._feature_key(
i, "sparse_value")] = tf.VarLenFeature(tf.float32)
elif self.metadata_.is_compressed(i):
sequence_features[self._feature_key(
i, "compressed")] = tf.VarLenFeature(tf.string)
else:
sequence_features[self._feature_key(
i, "dense_input")] = tf.FixedLenSequenceFeature(
self.metadata_.get_tensor_size(i), dtype=tf.float32)
# read TFRecord
contexts, features = tf.parse_single_sequence_example(
sequence_example_proto,
context_features={
"label_index": tf.VarLenFeature(tf.int64),
"label_score": tf.VarLenFeature(tf.float32),
},
sequence_features=sequence_features,
)
sample = [] # will contain [features, labels]
for i in range(self.metadata_.get_bundle_size()):
key_dense = self._feature_key(i, "dense_input")
row_count, col_count = self.metadata_.get_matrix_size(i)
num_channels = self.metadata_.get_num_channels(i)
sequence_size = self.metadata_.get_sequence_size()
fixed_matrix_size = row_count > 0 and col_count > 0
row_count = row_count if row_count > 0 else None
col_count = col_count if col_count > 0 else None
if key_dense in features:
f = features[key_dense]
if not fixed_matrix_size:
raise ValueError(
"To parse dense data, the tensor shape should " +
"be known but got {} instead...".format(
(sequence_size, row_count, col_count)))
f = tf.reshape(
f, [sequence_size, row_count, col_count, num_channels])
sample.append(f)
sequence_size = sequence_size if sequence_size > 0 else None
key_compressed = self._feature_key(i, "compressed")
if key_compressed in features:
compressed_images = features[key_compressed].values
decompress_image_func = lambda x: dataset_utils.decompress_image(
x, num_channels=num_channels)
# `images` here is a 4D-tensor of shape [T, H, W, C], some of which might be unknown
images = tf.map_fn(decompress_image_func,
compressed_images,
dtype=tf.float32)
images.set_shape(
[sequence_size, row_count, col_count, num_channels])
sample.append(images)
key_sparse_val = self._feature_key(i, "sparse_value")
if key_sparse_val in features:
key_sparse_col = self._feature_key(i, "sparse_col_index")
key_sparse_row = self._feature_key(i, "sparse_row_index")
key_sparse_channel = self._feature_key(i,
"sparse_channel_index")
sparse_col = features[key_sparse_col].values
sparse_row = features[key_sparse_row].values
try: # For back-compatibility. Before, there was no channel dimension.
sparse_channel = features[key_sparse_channel].values
except:
# I think this won't work, Tensor object has no 'len'
sparse_channel = [0] * len(sparse_col)
sparse_val = features[key_sparse_val].values
if col_count > num_channels:
print("Sparse tabular data")
# TABULAR: [120, 1]
# [1000, 2]
# [1504, 1]
# each row is (index, value)
sparse_col = tf.cast(sparse_col, tf.float32)
sparse_channel = tf.cast(sparse_channel, tf.float32)
tensor = tf.concat([
tf.reshape(sparse_col, [-1, 1]),
tf.reshape(sparse_val, [-1, 1])
], 1)
tensor = tf.reshape(tensor, [1, -1, 2, 1])
tensor = tf.cast(tensor, tf.float32)
# Could use SparseTensor (to dense) because the shape of the dense tensor is known:
# (1, col_count, 1, 1)
else:
print("Sparse text data")
# TEXT: [232, 2, 41]
# each example is a 'time series' of indexes
tensor = tf.reshape(sparse_channel, [-1, 1, 1, 1])
tensor = tf.cast(tensor, tf.float32)
sample.append(tensor)
# TODO: see how we can keep sparse tensors instead of
# returning dense ones.
label_indices = (contexts["label_index"].values, )
label_indices = tf.reshape(label_indices, [-1, 1])
sparse_tensor = tf.sparse.SparseTensor(
indices=label_indices,
values=contexts["label_score"].values,
dense_shape=(self.metadata_.get_output_size(), ),
)
labels = tf.sparse.to_dense(sparse_tensor, validate_indices=False)
sample.append(labels)
return sample
