def infer(self, features, **kwargs):
with tf.variable_scope("sparse_transformer", reuse=tf.AUTO_REUSE):
features = self.bottom(features)
decode_length = self.hparams.max_target_length
cache = {}
decoding_stats = {}
targets_old = features.get("targets")
start_step = 0
initial_output = tf.zeros((self.batch_size, decode_length, 1, 1),
dtype=tf.int32)
initial_logits = tf.zeros(
(self.batch_size, decode_length, self.vocab_size))
# call body once to initialize cache with representations of input frames.
features["targets"] = initial_output
# Set shape of inputs
if "inputs" in features:
features["inputs"].set_shape([
self.batch_size, self.hparams.max_length, 1,
self.hparams.hidden_size
])
with tf.variable_scope("sparse_transformer/body", reuse=tf.AUTO_REUSE):
self.body(features,
decode_step=None,
cache=cache,
decoding_stats=decoding_stats)
def infer_step(i, recent_output, recent_logits, cache, decoding_stats):
"""Inference step."""
features_copy = features.copy()
features_copy["targets"] = recent_output
cur_sample, cur_logit = self.sample(features_copy,
decode_step=i,
cache=cache,
decoding_stats=decoding_stats)
pos = i
samples = recent_output + tf.scatter_nd(
indices=[[b, pos, 0, 0] for b in range(self.batch_size)],
updates=cur_sample,
shape=utils.shape_list(recent_output))
logits = recent_logits + tf.scatter_nd(
indices=[[b, pos] for b in range(self.batch_size)],
updates=cur_logit,
shape=utils.shape_list(recent_logits))
return i + 1, samples, logits, cache, decoding_stats
def while_exit_cond(i, result, logits, cache, decoding_stats): # pylint: disable=unused-argument
"""Exit the loop if it reaches decode_length."""
not_overflow = i < decode_length
return not_overflow
_, final_result, final_logits, _, decoding_stats = tf.while_loop(
while_exit_cond,
infer_step, [
start_step, initial_output, initial_logits, cache,
decoding_stats
],
back_prop=False,
parallel_iterations=1)
original_shape = [decode_length]
blocks_per_dim = [
s // q for s, q in zip(original_shape, self.hparams.query_shape)
]
final_result_shape = utils.shape_list(final_result)
final_result = tf.reshape(
final_result,
[final_result_shape[0], -1,
np.prod(self.hparams.query_shape), 1])
final_logits_shape = utils.shape_list(final_logits)
final_logits = tf.reshape(final_logits, [
final_logits_shape[0], -1,
np.prod(self.hparams.query_shape), final_logits_shape[-1]
])
final_result = utils.unflatten_blocks_nd(final_result, blocks_per_dim)
final_result = utils.put_back_blocks_nd(final_result,
self.hparams.query_shape)
final_logits = utils.unflatten_blocks_nd(final_logits, blocks_per_dim)
final_logits = utils.put_back_blocks_nd(final_logits,
self.hparams.query_shape)
for name, value in decoding_stats.items():
tf.summary.scalar("decodes/%s" % name, value / decode_length)
# Reassign targets back to the previous value.
if targets_old is not None:
features["targets"] = targets_old
return {
"outputs": final_result,
"scores": None,
"logits": final_logits,
"losses": None,
}
def lstm_decoder_infer(self,
inputs,
sequence_length,
hparams,
clss,
train,
initial_state=None,
bottleneck=None):
# IN PREDICT MODE, RUN tf.while RNN
max_decode_length = 51
batch_size = common_layers.shape_list(inputs)[0]
zero_pad, logits_so_far = self.create_initial_input_for_decode(
batch_size)
layers = contrib_rnn.MultiRNNCell([
self.lstm_cell(hparams, train)
for _ in range(hparams.num_hidden_layers)
])
if initial_state is None:
raise Exception('initial state should be init from bottleneck!')
# append one-hot class to bottleneck, which will be given per step
clss = tf.reshape(clss, [-1])
if not hparams.use_cls:
clss = tf.zeros_like(clss)
if hparams.condition_on_sln:
sln = tf.reshape(sequence_length, [-1])
bottleneck = tf.concat(
(bottleneck, tf.one_hot(clss, hparams.num_categories),
tf.one_hot(sln, max_decode_length)), -1)
else:
bottleneck = tf.concat(
(bottleneck, tf.one_hot(clss, hparams.num_categories)), -1)
def infer_step(logits_so_far, current_hidden):
"""Inference step of LSTM while loop."""
# unflatten hidden:
current_hidden = tuple(
tf.nn.rnn_cell.LSTMStateTuple(c=s[0], h=s[1])
for s in current_hidden)
# put logits_so_far through top
tm = self._problem_hparams.modality['targets']
# need to reuse top params
reset_scope = tf.variable_scope(tf.VariableScope(
tf.AUTO_REUSE, ''),
reuse=tf.AUTO_REUSE,
auxiliary_name_scope=False)
top_scope = tf.variable_scope('svg_decoder/{}_modality'.format(tm),
reuse=tf.AUTO_REUSE)
with reset_scope, top_scope:
samples_so_far = self.hparams.top['targets'](
logits_so_far, None, self.hparams,
self.problem_hparams.vocab_size)
# append a zero pad to the samples. this effectively shifts the samples
# right, but, unlike shift_right, by not removing the last element, we
# allow an empty samples_so_far to not be empty after padding
samples_so_far = tf.concat([zero_pad, samples_so_far], axis=1)
shifted_targets = common_layers.flatten4d3d(samples_so_far)
# now take the very last one here, will be the actual input to the rnn
shifted_targets = shifted_targets[:, -1:, :]
# tile and append the bottleneck to inputs
sln_offset = 0
if hparams.condition_on_sln:
sln_offset = 51
pre_tile_y = tf.reshape(bottleneck, [
common_layers.shape_list(bottleneck)[0], 1,
hparams.bottleneck_bits + hparams.num_categories + sln_offset
])
overlay_x = tf.tile(
pre_tile_y,
[1, common_layers.shape_list(shifted_targets)[1], 1])
inputs = tf.concat([shifted_targets, overlay_x], -1)
seq_len_batch = tf.ones([common_layers.shape_list(inputs)[0]])
# RUN PRE-LSTM LAYER
with tf.variable_scope('pre_decoder', reuse=tf.AUTO_REUSE):
inputs = tf.layers.dense(inputs,
hparams.hidden_size,
name='bottom')
inputs = tf.nn.tanh(inputs)
# RUN LSTM
with tf.variable_scope('lstm_decoder', reuse=tf.AUTO_REUSE):
next_step, next_state = tf.nn.dynamic_rnn(
layers,
inputs,
seq_len_batch,
initial_state=current_hidden,
dtype=tf.float32,
time_major=False)
next_step = tf.expand_dims(next_step, [1])
logits_so_far = tf.concat([logits_so_far, next_step], 1)
#print('concat success')
# input()
# flatten state
next_state = tuple((s.c, s.h) for s in next_state)
return logits_so_far, next_state
def while_exit_cond(logits_so_far, unused_current_hidden):
length = common_layers.shape_list(logits_so_far)[1]
return length < max_decode_length
# passing state must be flattened:
initial_state = tuple([(s.c, s.h) for s in initial_state])
# actually run tf.while:
logits, final_state = tf.while_loop(
while_exit_cond,
infer_step, [logits_so_far, initial_state],
shape_invariants=[
tf.TensorShape([None, None, 1, hparams.hidden_size]),
tuple([(s[0].get_shape(), s[1].get_shape())
for s in initial_state]),
],
back_prop=False,
parallel_iterations=1)
# logits should be returned in 3d mode:
logits = common_layers.flatten4d3d(logits)
return logits, final_state
def sorted_non_max_suppression_padded(scores, boxes, max_output_size,
iou_threshold):
"""A wrapper that handles non-maximum suppression.
Assumption:
* The boxes are sorted by scores unless the box is a dot (all coordinates
are zero).
* Boxes with higher scores can be used to suppress boxes with lower scores.
The overal design of the algorithm is to handle boxes tile-by-tile:
boxes = boxes.pad_to_multiply_of(tile_size)
num_tiles = len(boxes) // tile_size
output_boxes = []
for i in range(num_tiles):
box_tile = boxes[i*tile_size : (i+1)*tile_size]
for j in range(i - 1):
suppressing_tile = boxes[j*tile_size : (j+1)*tile_size]
iou = bbox_overlap(box_tile, suppressing_tile)
# if the box is suppressed in iou, clear it to a dot
box_tile *= _update_boxes(iou)
# Iteratively handle the diagnal tile.
iou = _box_overlap(box_tile, box_tile)
iou_changed = True
while iou_changed:
# boxes that are not suppressed by anything else
suppressing_boxes = _get_suppressing_boxes(iou)
# boxes that are suppressed by suppressing_boxes
suppressed_boxes = _get_suppressed_boxes(iou, suppressing_boxes)
# clear iou to 0 for boxes that are suppressed, as they cannot be used
# to suppress other boxes any more
new_iou = _clear_iou(iou, suppressed_boxes)
iou_changed = (new_iou != iou)
iou = new_iou
# remaining boxes that can still suppress others, are selected boxes.
output_boxes.append(_get_suppressing_boxes(iou))
if len(output_boxes) >= max_output_size:
break
Args:
scores: a tensor with a shape of [batch_size, anchors].
boxes: a tensor with a shape of [batch_size, anchors, 4].
max_output_size: a scalar integer `Tensor` representing the maximum number
of boxes to be selected by non max suppression.
iou_threshold: a float representing the threshold for deciding whether boxes
overlap too much with respect to IOU.
Returns:
nms_scores: a tensor with a shape of [batch_size, anchors]. It has same
dtype as input scores.
nms_proposals: a tensor with a shape of [batch_size, anchors, 4]. It has
same dtype as input boxes.
"""
batch_size = tf.shape(boxes)[0]
num_boxes = tf.shape(boxes)[1]
pad = tf.cast(tf.ceil(tf.cast(num_boxes, tf.float32) / NMS_TILE_SIZE),
tf.int32) * NMS_TILE_SIZE - num_boxes
boxes = tf.pad(tf.cast(boxes, tf.float32), [[0, 0], [0, pad], [0, 0]])
scores = tf.pad(tf.cast(scores, tf.float32), [[0, 0], [0, pad]])
num_boxes += pad
def _loop_cond(unused_boxes, unused_threshold, output_size, idx):
return tf.logical_and(
tf.reduce_min(output_size) < max_output_size,
idx < num_boxes // NMS_TILE_SIZE)
selected_boxes, _, output_size, _ = tf.while_loop(
_loop_cond, _suppression_loop_body, [
boxes, iou_threshold,
tf.zeros([batch_size], tf.int32),
tf.constant(0)
])
idx = num_boxes - tf.cast(
tf.nn.top_k(
tf.cast(tf.reduce_any(selected_boxes > 0, [2]), tf.int32) *
tf.expand_dims(tf.range(num_boxes, 0, -1), 0), max_output_size)[0],
tf.int32)
idx = tf.minimum(idx, num_boxes - 1)
idx = tf.reshape(
idx + tf.reshape(tf.range(batch_size) * num_boxes, [-1, 1]), [-1])
boxes = tf.reshape(tf.gather(tf.reshape(boxes, [-1, 4]), idx),
[batch_size, max_output_size, 4])
boxes = boxes * tf.cast(
tf.reshape(tf.range(max_output_size), [1, -1, 1]) < tf.reshape(
output_size, [-1, 1, 1]), boxes.dtype)
scores = tf.reshape(tf.gather(tf.reshape(scores, [-1, 1]), idx),
[batch_size, max_output_size])
scores = scores * tf.cast(
tf.reshape(tf.range(max_output_size), [1, -1]) < tf.reshape(
output_size, [-1, 1]), scores.dtype)
return scores, boxes
def compute_gradients(self,
loss,
var_list,
gate_gradients=GATE_OP,
aggregation_method=None,
colocate_gradients_with_ops=False,
grad_loss=None,
gradient_tape=None):
if callable(loss):
# TF is running in Eager mode, check we received a vanilla tape.
if not gradient_tape:
raise ValueError(
'When in Eager mode, a tape needs to be passed.')
vector_loss = loss()
if self._num_microbatches is None:
self._num_microbatches = tf.shape(input=vector_loss)[0]
sample_state = self._dp_sum_query.initial_sample_state(
var_list)
microbatches_losses = tf.reshape(vector_loss,
[self._num_microbatches, -1])
sample_params = (self._dp_sum_query.derive_sample_params(
self._global_state))
def process_microbatch(i, sample_state):
"""Process one microbatch (record) with privacy helper."""
microbatch_loss = tf.reduce_mean(
input_tensor=tf.gather(microbatches_losses, [i]))
grads = gradient_tape.gradient(microbatch_loss, var_list)
sample_state = self._dp_sum_query.accumulate_record(
sample_params, sample_state, grads)
return sample_state
for idx in range(self._num_microbatches):
sample_state = process_microbatch(idx, sample_state)
grad_sums, self._global_state = (
self._dp_sum_query.get_noised_result(
sample_state, self._global_state))
def normalize(v):
return v / tf.cast(self._num_microbatches, tf.float32)
final_grads = tf.nest.map_structure(normalize, grad_sums)
grads_and_vars = list(zip(final_grads, var_list))
return grads_and_vars
else:
# TF is running in graph mode, check we did not receive a gradient tape.
if gradient_tape:
raise ValueError(
'When in graph mode, a tape should not be passed.')
# Note: it would be closer to the correct i.i.d. sampling of records if
# we sampled each microbatch from the appropriate binomial distribution,
# although that still wouldn't be quite correct because it would be
# sampling from the dataset without replacement.
if self._num_microbatches is None:
self._num_microbatches = tf.shape(input=loss)[0]
microbatches_losses = tf.reshape(loss,
[self._num_microbatches, -1])
sample_params = (self._dp_sum_query.derive_sample_params(
self._global_state))
def process_microbatch(i, sample_state):
"""Process one microbatch (record) with privacy helper."""
grads, _ = zip(*super(cls, self).compute_gradients(
tf.reduce_mean(
input_tensor=tf.gather(microbatches_losses, [i])),
var_list, gate_gradients, aggregation_method,
colocate_gradients_with_ops, grad_loss))
grads_list = [
g if g is not None else tf.zeros_like(v)
for (g, v) in zip(list(grads), var_list)
]
sample_state = self._dp_sum_query.accumulate_record(
sample_params, sample_state, grads_list)
return sample_state
if var_list is None:
var_list = (tf.trainable_variables() + tf.get_collection(
tf.GraphKeys.TRAINABLE_RESOURCE_VARIABLES))
sample_state = self._dp_sum_query.initial_sample_state(
var_list)
if self._unroll_microbatches:
for idx in range(self._num_microbatches):
sample_state = process_microbatch(idx, sample_state)
else:
# Use of while_loop here requires that sample_state be a nested
# structure of tensors. In general, we would prefer to allow it to be
# an arbitrary opaque type.
cond_fn = lambda i, _: tf.less(i, self._num_microbatches)
body_fn = lambda i, state: [tf.add(i, 1), process_microbatch(i, state)] # pylint: disable=line-too-long
idx = tf.constant(0)
_, sample_state = tf.while_loop(
cond=cond_fn,
body=body_fn,
loop_vars=[idx, sample_state])
grad_sums, self._global_state = (
self._dp_sum_query.get_noised_result(
sample_state, self._global_state))
def normalize(v):
return tf.truediv(
v, tf.cast(self._num_microbatches, tf.float32))
final_grads = tf.nest.map_structure(normalize, grad_sums)
return list(zip(final_grads, var_list))
def task_metalearn(inp, reuse=True):
"""Run meta learning."""
TRAIN = 'train' in prefix # pylint: disable=invalid-name
# Perform gradient descent for one task in the meta-batch.
inputa, inputb, labela, labelb = inp
task_outputbs, task_lossesb = [], []
task_msesb = []
# support_pred and loss, (n_data_per_task, out_dim)
task_outputa = self.forward(
inputa, weights, reuse=reuse) # only not reuse on the first iter
# labela is (n_data_per_task, out_dim)
task_lossa = self.loss_func(task_outputa, labela)
# INNER LOOP (no change with ib)
grads = tf.gradients(task_lossa, list(weights.values()))
if FLAGS.stop_grad:
grads = [tf.stop_gradient(grad) for grad in grads]
gradients = dict(zip(weights.keys(), grads))
## theta_pi = theta - alpha * grads
fast_weights = dict(
zip(weights.keys(), [
weights[key] - self.update_lr * gradients[key]
for key in weights.keys()
]))
# use theta_pi to forward meta-test
output = self.forward(inputb, fast_weights, reuse=True)
task_outputbs.append(output)
# meta-test loss
task_msesb.append(self.loss_func(output, labelb))
task_lossesb.append(self.loss_func(output, labelb))
def while_body(fast_weights_values):
"""Update params."""
loss = self.loss_func(
self.forward(
inputa,
dict(zip(fast_weights.keys(), fast_weights_values)),
reuse=True), labela)
grads = tf.gradients(loss, fast_weights_values)
fast_weights_values = [
v - self.update_lr * g for v, g in zip(fast_weights_values, grads)
]
return fast_weights_values
fast_weights_values = tf.while_loop(
lambda _: True,
while_body,
loop_vars=[fast_weights.values()],
maximum_iterations=num_updates - 1,
back_prop=TRAIN)
fast_weights = dict(zip(fast_weights.keys(), fast_weights_values))
output = self.forward(inputb, fast_weights, reuse=True)
task_outputbs.append(output)
task_msesb.append(self.loss_func(output, labelb))
task_lossesb.append(self.loss_func(output, labelb))
task_output = [
task_outputa, task_outputbs, task_lossa, task_lossesb, task_msesb
]
return task_output
def sample_sequence(
hparams,
length,
start_token=None,
batch_size=None,
context=None,
temperature=1,
top_k=0,
top_p=0.0,
):
if start_token is None:
assert (context
is not None), 'Specify exactly one of start_token and context!'
else:
assert (context is
None), 'Specify exactly one of start_token and context!'
context = tf.fill([batch_size, 1], start_token)
def step(hparams, tokens, past=None):
lm_output = gpt2_model.model(hparams=hparams,
X=tokens,
past=past,
reuse=tf.AUTO_REUSE)
logits = lm_output['logits'][:, :, :hparams.n_vocab]
presents = lm_output['present']
presents.set_shape(
gpt2_model.past_shape(hparams=hparams, batch_size=batch_size))
return {'logits': logits, 'presents': presents}
with tf.name_scope('sample_sequence'):
context_output = step(hparams, context[:, :-1])
def body(past, prev, output):
next_outputs = step(hparams, prev[:, tf.newaxis], past=past)
logits = next_outputs['logits'][:, -1, :] / tf.cast(
temperature, tf.float32)
if top_p > 0.0:
logits = top_p_logits(logits, p=top_p)
else:
logits = top_k_logits(logits, k=top_k)
samples = tf.random.categorical(logits,
num_samples=1,
dtype=tf.int32)
return [
tf.concat([past, next_outputs['presents']], axis=-2),
tf.squeeze(samples, axis=[1]),
tf.concat([output, samples], axis=1),
]
def cond(*args):
return True
_, _, tokens = tf.while_loop(
cond=cond,
body=body,
maximum_iterations=length,
loop_vars=[context_output['presents'], context[:, -1], context],
shape_invariants=[
tf.TensorShape(
gpt2_model.past_shape(hparams=hparams,
batch_size=batch_size)),
tf.TensorShape([batch_size]),
tf.TensorShape([batch_size, None]),
],
back_prop=False,
)
return tokens
def _build_adapted_parameters(
self,
inputs,
labels,
initial_parameters,
num_steps,
back_prop=False,
parallel_iterations=1,
shuffle=True,
):
"""Builds adapted model parameters dynamically using tf.while_loop.
Parameters
----------
inputs : Tensor <float32> [None, ...]
Inputs of the samples used for building adapted parameters.
labels : Tensor <float32> [None, num_classes]
Labels of the samples used for building adapted parameters.
initial_parameters : dict of Tensors
A dictionary with initial parameters of the model.
num_steps : int or Tensor <int32> []
Number of gradient steps used for adaptation.
back_prop : bool, optional (default: False)
Indicates whether backprop is allowed through the adapted parameters.
parallel_iterations : int, optional (default=1)
Parallel iterations parameter for the tf.while_loop.
shuffle : bool, optional (default=True)
Whether to shuffle the samples before batching.
Returns
-------
adapted_parameters : dict of Tensors
A dictionary with adapted parameters of the model.
"""
# If batch size not specified, use all inputs.
batch_size = self.batch_size or tf.shape(inputs)[0]
# Build batched indices.
# <int32> [batch_size * num_steps].
indices = tf.math.mod(tf.range(batch_size * num_steps, dtype=tf.int32),
tf.shape(inputs)[0])
if shuffle:
indices = tf.random.shuffle(indices)
# <int32> [num_steps, batch_size].
batched_indices = tf.reshape(indices, shape=(num_steps, batch_size))
def cond_fn(step, _unused_params):
return tf.less(step, num_steps)
def body_fn(step, parameters):
x = tf.gather(inputs, batched_indices[step], axis=0)
y = tf.gather(labels, batched_indices[step], axis=0)
# Build a model with new parameters.
with utils.custom_make_variable(parameters, self.model.name):
self.inner_adapted_models.append(self.model_builder())
loss = self.inner_adapted_models[-1].loss(x, y)
# Build new parameters.
new_parameters = utils.build_new_parameters(
loss,
parameters,
optimizer=self.inner_optimizer,
first_order=self.first_order,
)
return [tf.add(step, 1), new_parameters]
_, adapted_parameters = tf.while_loop(
cond=cond_fn,
body=body_fn,
loop_vars=[tf.constant(0), initial_parameters],
parallel_iterations=parallel_iterations,
back_prop=back_prop,
name="adapt",
)
return adapted_parameters
def multiply2n_ragged(tensor1, tensor2):
#this function multiplies two ragged tesnsors of rank 2 . the most outer ranks of the two tensros must be equal .
#setting variables and constats
outerloop_counter = tf.constant(0, dtype=tf.int32)
carry_on = tf.constant(0, dtype=tf.int32)
taValues = tf.TensorArray(tf.float32,
size=0,
dynamic_size=True,
clear_after_read=False,
infer_shape=False)
taL2Splits = tf.TensorArray(tf.int32,
size=0,
dynamic_size=True,
clear_after_read=False,
infer_shape=False)
taL1Splits = tf.TensorArray(tf.int32,
size=0,
dynamic_size=True,
clear_after_read=False,
infer_shape=False)
taL1Splits = taL1Splits.write(
0, [0]) ## required intialization for L1 split only
innerloop_processing_graphed = tf.function(innerloop_processing)
generateL1Tensor_writeback_graphed = tf.function(
generateL1Tensor_writeback)
def outerloop_cond(counter, input1, input2, taValues, taL2Splits,
taL1Splits, carry_on):
value = tf.shape(input1[2])[0] - 1
return counter < value ## this is the length of the outermost dimision , stop of this
def outloop_body(counter, input1, input2, taValues, taL2Splits, taL1Splits,
carry_on):
l1_comp_begin = input1[2][
counter] ## this is begin position of the current row in the outer split ( ie. the ith value in the outer row split tensor )
l1_comp_end = input1[2][
counter +
1] ## this is end position of the current row in the outer split (ie. the ith + 1 value in the outer row split tensor)
l1_comp2_begin = input2[2][
counter] ## we do the same for the second components
l1_comp2_end = input2[2][
counter + 1] ## we do the same for the second components
comp = innerloop_processing_graphed(
l1_comp_begin, l1_comp_end, input1
) ## now retrive the data to be procesed for the selected rows from vector1
comp2 = innerloop_processing_graphed(
l1_comp2_begin, l1_comp2_end, input2) ## do the same for vector 2
#comp2 = tf.transpose(comp2) ### desired operation
multiply = tf.matmul(comp, comp2) #### This is the desired operation
myshape = tf.shape(
multiply
) ## calculate the shape of the result in order to prepare to write the result in a ragged tensor format.
offset = tf.cond(
taValues.size() > 0, lambda: tf.shape(taValues.concat())[0],
lambda: 0
) ### this is a hack, TensorArray.concat returns an error if the array is empty. Thus we check before calling this.
#print11=tf.print("=================Final Shape is : " ,myshape[0] , " X " ,myshape[1] )
l2v = generateL1Tensor_writeback_graphed(
offset, myshape[1], myshape[0]
) # generate the inner row split of the result for the current element
taL2Splits = taL2Splits.write(
counter, l2v) # write back the inner rowlplit to a TensorArray
taValues = taValues.write(
counter, tf.reshape(multiply, [-1])
) # wirte back the actual ragged tensor elemnts in a another TensorArray
carry_on = carry_on + myshape[
0] ## required to calculate the outer row splite
taL1Splits = taL1Splits.write(
counter + 1, [carry_on]) ## This is the outmost row split.
with tf.control_dependencies(
[comp, comp2, myshape, l2v, carry_on, multiply]):
counter = counter + 1
return counter, input1, input2, taValues, taL2Splits, taL1Splits, carry_on
with tf.name_scope("RaggedMultiply"):
outerloop_finalcounter, _, _, ta1, ta2, ta3, _ = tf.while_loop(
outerloop_cond,
outloop_body, [
outerloop_counter, tensor1, tensor2, taValues, taL2Splits,
taL1Splits, carry_on
],
back_prop=True)
uinquie_ta2, _ = tf.unique(
ta2.concat()
) # this is required since some values might be duplicate in the row split itself
t1 = ta1.concat()
t3 = ta3.concat()
#with tf.control_dependencies([t1 , uinquie_ta2 ,t3 ]):
final_values = t1, uinquie_ta2, t3
return final_values
def _create_cross_entropy_action_tensors(self,
num_samples=200,
top_k_portion=0.5):
"""Create tensorflow operations for cross_entropy max_actions."""
top_k_num = int(top_k_portion * num_samples)
self._dynamic_batch_size = tf.placeholder(dtype=tf.int32,
name="dynamic_batch_size")
self._action_init_tensor = tf.placeholder(dtype=tf.float32,
name="action_init_tensor",
shape=(None,
self.action_dim))
self._tolerance_tensor = tf.placeholder(dtype=tf.float32,
name="tolerance_tensor",
shape=())
sample_mean_init = self._action_init_tensor
sample_covariance_diag_init = tf.ones_like(self._action_init_tensor)
top_k_value_init = tf.constant(
[np.inf]) * tf.ones(shape=(self._dynamic_batch_size, 1))
top_k_action_samples_init = tf.tile(
tf.expand_dims(tf.zeros_like(self._action_init_tensor), axis=1),
[1, top_k_num, 1])
random_sampler = tfp.distributions.MultivariateNormalDiag(
loc=np.zeros(self.action_dim), scale_diag=np.ones(self.action_dim))
def cond_cross_entropy(itr, cond_terminate, sample_mean,
sample_covariance_diag, top_k_value,
top_k_action_samples):
del sample_mean, sample_covariance_diag, top_k_value, top_k_action_samples
cond_1 = tf.math.less(itr, self.action_maximization_iterations)
return tf.math.logical_and(cond_1, tf.logical_not(cond_terminate))
def body_cross_entropy(itr, cond_terminate, sample_mean,
sample_covariance_diag, top_k_value,
top_k_action_samples):
"""Function for cross entropy search of actions."""
del top_k_action_samples
top_k_value_prev = top_k_value
batch_sample_mean = tf.reshape(
tf.tile(sample_mean, [1, num_samples]),
[self._dynamic_batch_size * num_samples, self.action_dim])
batch_sample_covariance_diag = tf.reshape(
tf.tile(sample_covariance_diag, [1, num_samples]),
[self._dynamic_batch_size * num_samples, self.action_dim])
action_samples = self._action_projection(
batch_sample_mean +
batch_sample_covariance_diag * tf.cast(random_sampler.sample(
sample_shape=[self._dynamic_batch_size * num_samples]),
dtype=tf.float32))
state_samples = tf.reshape(
tf.tile(self._state_tensor, [1, num_samples]),
[self._dynamic_batch_size * num_samples, self.state_dim])
action_samples = tf.reshape(
action_samples,
[self._dynamic_batch_size * num_samples, self.action_dim])
values = tf.reshape(
self._build_q_function_net(state_samples, action_samples),
[self._dynamic_batch_size, num_samples])
# everything is in batch mode
top_k_index = tf.argsort(values, axis=1,
direction="DESCENDING")[:, 0:top_k_num]
top_k_index_1d = tf.reshape(
top_k_index, [self._dynamic_batch_size * top_k_num, 1])
counter_tensor_1d = tf.reshape(
tf.tile(
tf.reshape(tf.range(self._dynamic_batch_size),
[self._dynamic_batch_size, 1]), [1, top_k_num]),
[self._dynamic_batch_size * top_k_num, 1])
top_k_index_2d = tf.concat([counter_tensor_1d, top_k_index_1d],
axis=1)
action_samples = tf.reshape(
action_samples,
[self._dynamic_batch_size, num_samples, self.action_dim])
top_k_action_samples = tf.gather_nd(action_samples, top_k_index_2d)
top_k_action_samples = tf.reshape(
top_k_action_samples,
[self._dynamic_batch_size, top_k_num, self.action_dim])
top_k_values = tf.gather_nd(values, top_k_index_2d)
top_k_values = tf.reshape(top_k_values,
[self._dynamic_batch_size, top_k_num])
# it's a batch_size x 1 tensor
top_k_value = tf.reshape(tf.reduce_mean(top_k_values, axis=1),
[self._dynamic_batch_size, 1])
sample_mean = tf.reduce_mean(top_k_action_samples, axis=1)
sample_covariance_diag = tf.math.reduce_variance(
top_k_action_samples, axis=1)
itr = itr + 1
cond_terminate = tf.less_equal(
tf.reduce_mean(tf.math.abs(top_k_value - top_k_value_prev)),
self._tolerance_tensor)
return itr, cond_terminate, sample_mean, sample_covariance_diag, \
top_k_value, top_k_action_samples
self.cost_optimizer = tf.while_loop(
cond_cross_entropy, body_cross_entropy, [
tf.constant(0),
tf.constant(False), sample_mean_init,
sample_covariance_diag_init, top_k_value_init,
top_k_action_samples_init
])
def run(params, y_data_test, siz_x_data, y_normscale, load_dir):
multi_modal = True
# USEFUL SIZES
xsh1 = siz_x_data
if params['by_channel'] == True:
ysh0 = np.shape(y_data_test)[0]
ysh1 = np.shape(y_data_test)[1]
else:
ysh0 = np.shape(y_data_test)[1]
ysh1 = np.shape(y_data_test)[2]
z_dimension = params['z_dimension']
n_weights_r1 = params['n_weights_r1']
n_weights_r2 = params['n_weights_r2']
n_weights_q = params['n_weights_q']
n_modes = params['n_modes']
n_hlayers_r1 = len(params['n_weights_r1'])
n_hlayers_r2 = len(params['n_weights_r2'])
n_hlayers_q = len(params['n_weights_q'])
n_conv_r1 = len(params['n_filters_r1'])
n_conv_r2 = len(params['n_filters_r2'])
n_conv_q = len(params['n_filters_q'])
n_filters_r1 = params['n_filters_r1']
n_filters_r2 = params['n_filters_r2']
n_filters_q = params['n_filters_q']
filter_size_r1 = params['filter_size_r1']
filter_size_r2 = params['filter_size_r2']
filter_size_q = params['filter_size_q']
n_convsteps = params['n_convsteps']
batch_norm = params['batch_norm']
red = params['reduce']
if n_convsteps != None:
ysh_conv_r1 = int(ysh1*n_filters_r1/2**n_convsteps) if red==True else int(ysh1/2**n_convsteps)
ysh_conv_r2 = int(ysh1*n_filters_r2/2**n_convsteps) if red==True else int(ysh1/2**n_convsteps)
ysh_conv_q = int(ysh1*n_filters_q/2**n_convsteps) if red==True else int(ysh1/2**n_convsteps)
else:
ysh_conv_r1 = int(ysh1)
ysh_conv_r2 = int(ysh1)
ysh_conv_q = int(ysh1)
drate = params['drate']
maxpool_r1 = params['maxpool_r1']
maxpool_r2 = params['maxpool_r2']
maxpool_q = params['maxpool_q']
conv_strides_r1 = params['conv_strides_r1']
conv_strides_r2 = params['conv_strides_r2']
conv_strides_q = params['conv_strides_q']
pool_strides_r1 = params['pool_strides_r1']
pool_strides_r2 = params['pool_strides_r2']
pool_strides_q = params['pool_strides_q']
if params['reduce'] == True or n_filters_r1 != None:
if params['by_channel'] == True:
num_det = np.shape(y_data_test)[2]
else:
num_det = ysh0
else:
num_det = None
# identify the indices of different sets of physical parameters
vonmise_mask, vonmise_idx_mask, vonmise_len = get_param_index(params['inf_pars'],params['vonmise_pars'])
gauss_mask, gauss_idx_mask, gauss_len = get_param_index(params['inf_pars'],params['gauss_pars'])
sky_mask, sky_idx_mask, sky_len = get_param_index(params['inf_pars'],params['sky_pars'])
ra_mask, ra_idx_mask, ra_len = get_param_index(params['inf_pars'],['ra'])
dec_mask, dec_idx_mask, dec_len = get_param_index(params['inf_pars'],['dec'])
m1_mask, m1_idx_mask, m1_len = get_param_index(params['inf_pars'],['mass_1'])
m2_mask, m2_idx_mask, m2_len = get_param_index(params['inf_pars'],['mass_2'])
idx_mask = np.argsort(gauss_idx_mask + vonmise_idx_mask + m1_idx_mask + m2_idx_mask + sky_idx_mask) # + dist_idx_mask)
masses_len = m1_len + m2_len
graph = tf.Graph()
session = tf.Session(graph=graph)
with graph.as_default():
tf.set_random_seed(np.random.randint(0,10))
SMALL_CONSTANT = 1e-12
# PLACEHOLDERS
bs_ph = tf.placeholder(dtype=tf.int64, name="bs_ph") # batch size placeholder
y_ph = tf.placeholder(dtype=tf.float32, shape=[None, params['ndata'], num_det], name="y_ph")
# LOAD VICI NEURAL NETWORKS
r2_xzy = VICI_decoder.VariationalAutoencoder('VICI_decoder', vonmise_mask, gauss_mask, m1_mask, m2_mask, sky_mask, n_input1=z_dimension,
n_input2=params['ndata'], n_output=xsh1, n_channels=num_det, n_weights=n_weights_r2,
drate=drate, n_filters=n_filters_r2,
filter_size=filter_size_r2, maxpool=maxpool_r2)
r1_zy = VICI_encoder.VariationalAutoencoder('VICI_encoder', n_input=params['ndata'], n_output=z_dimension, n_channels=num_det, n_weights=n_weights_r1, # generates params for r1(z|y)
n_modes=n_modes, drate=drate, n_filters=n_filters_r1,
filter_size=filter_size_r1, maxpool=maxpool_r1)
q_zxy = VICI_VAE_encoder.VariationalAutoencoder('VICI_VAE_encoder', n_input1=xsh1, n_input2=params['ndata'], n_output=z_dimension,
n_channels=num_det, n_weights=n_weights_q, drate=drate,
n_filters=n_filters_q, filter_size=filter_size_q, maxpool=maxpool_q)
# reduce the y data size
y_conv = y_ph
# GET r1(z|y)
r1_loc, r1_scale, r1_weight = r1_zy._calc_z_mean_and_sigma(y_conv)
temp_var_r1 = SMALL_CONSTANT + tf.exp(r1_scale)
# define the r1(z|y) mixture model
bimix_gauss = tfd.MixtureSameFamily(
mixture_distribution=tfd.Categorical(logits=r1_weight),
components_distribution=tfd.MultivariateNormalDiag(
loc=r1_loc,
scale_diag=tf.sqrt(temp_var_r1)))
# DRAW FROM r1(z|y)
r1_zy_samp = bimix_gauss.sample()
# GET r2(x|z,y) from r1(z|y) samples
reconstruction_xzy = r2_xzy.calc_reconstruction(r1_zy_samp,y_ph)
# ugly but needed for now
# extract the means and variances of the physical parameter distributions
r2_xzy_mean_gauss = reconstruction_xzy[0]
r2_xzy_log_sig_sq_gauss = reconstruction_xzy[1]
r2_xzy_mean_vonmise = reconstruction_xzy[2]
r2_xzy_log_sig_sq_vonmise = reconstruction_xzy[3]
r2_xzy_mean_m1 = reconstruction_xzy[4]
r2_xzy_log_sig_sq_m1 = reconstruction_xzy[5]
r2_xzy_mean_m2 = reconstruction_xzy[6]
r2_xzy_log_sig_sq_m2 = reconstruction_xzy[7]
r2_xzy_mean_sky = reconstruction_xzy[8]
r2_xzy_log_sig_sq_sky = reconstruction_xzy[9]
# draw from r2(x|z,y) - the masses
temp_var_r2_m1 = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_m1) # the m1 variance
temp_var_r2_m2 = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_m2) # the m2 variance
joint = tfd.JointDistributionSequential([
tfd.Independent(tfd.TruncatedNormal(r2_xzy_mean_m1,tf.sqrt(temp_var_r2_m1),0,1,validate_args=True,allow_nan_stats=True),reinterpreted_batch_ndims=0), # m1
lambda b0: tfd.Independent(tfd.TruncatedNormal(r2_xzy_mean_m2,tf.sqrt(temp_var_r2_m2),0,b0,validate_args=True,allow_nan_stats=True),reinterpreted_batch_ndims=0)], # m2
validate_args=True)
r2_xzy_samp_masses = tf.transpose(tf.reshape(joint.sample(),[2,-1])) # sample from the m1.m2 space
# draw from r2(x|z,y) - the truncated gaussian
temp_var_r2_gauss = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_gauss)
@tf.function # make this s a tensorflow function
def truncnorm(idx,output): # we set up a function that adds the log-likelihoods and also increments the counter
loc = tf.slice(r2_xzy_mean_gauss,[0,idx],[-1,1]) # take each specific parameter mean using slice
std = tf.sqrt(tf.slice(temp_var_r2_gauss,[0,idx],[-1,1])) # take each specific parameter std using slice
tn = tfd.TruncatedNormal(loc,std,0.0,1.0) # define the truncated Gaussian distribution
return [idx+1, tf.concat([output,tf.reshape(tn.sample(),[bs_ph,1])],axis=1)] # return the updated index and new samples concattenated to the input
# we do the loop until we've hit all the truncated gaussian parameters - i starts at 0 and the samples starts with a set of zeros that we cut out later
idx = tf.constant(0) # initialise counter
nsamp = params['n_samples'] # define the number of samples (MUST be a normal int NOT tensor so can't use bs_ph)
output = tf.zeros([nsamp,1],dtype=tf.float32) # initialise the output (we cut this first set of zeros out later
condition = lambda i,output: i<gauss_len # define the while loop stopping condition
_,r2_xzy_samp_gauss = tf.while_loop(condition, truncnorm, loop_vars=[idx,output],shape_invariants=[idx.get_shape(), tf.TensorShape([nsamp,None])])
r2_xzy_samp_gauss = tf.slice(tf.reshape(r2_xzy_samp_gauss,[-1,gauss_len+1]),[0,1],[-1,-1]) # cut out the actual samples - delete the initial vector of zeros
# draw from r2(x|z,y) - the vonmises part
temp_var_r2_vonmise = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_vonmise)
con = tf.reshape(tf.math.reciprocal(temp_var_r2_vonmise),[-1,vonmise_len]) # modelling wrapped scale output as log variance
von_mises = tfp.distributions.VonMises(loc=2.0*np.pi*(r2_xzy_mean_vonmise-0.5), concentration=con)
r2_xzy_samp_vonmise = tf.reshape(von_mises.sample()/(2.0*np.pi) + 0.5,[-1,vonmise_len]) # sample from the von mises distribution and shift and scale from -pi-pi to 0-1
# draw from r2(x|z,y) - the von mises Fisher
temp_var_r2_sky = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_sky)
con = tf.reshape(tf.math.reciprocal(temp_var_r2_sky),[bs_ph]) # modelling wrapped scale output as log variance - only 1 concentration parameter for all sky
von_mises_fisher = tfp.distributions.VonMisesFisher(
mean_direction=tf.math.l2_normalize(tf.reshape(r2_xzy_mean_sky,[bs_ph,3]),axis=1),
concentration=con) # define p_vm(2*pi*mu,con=1/sig^2)
xyz = tf.reshape(von_mises_fisher.sample(),[bs_ph,3]) # sample the distribution
samp_ra = tf.math.floormod(tf.atan2(tf.slice(xyz,[0,1],[-1,1]),tf.slice(xyz,[0,0],[-1,1])),2.0*np.pi)/(2.0*np.pi) # convert to the rescaled 0->1 RA from the unit vector
samp_dec = (tf.asin(tf.slice(xyz,[0,2],[-1,1])) + 0.5*np.pi)/np.pi # convert to the rescaled 0->1 dec from the unit vector
r2_xzy_samp_sky = tf.reshape(tf.concat([samp_ra,samp_dec],axis=1),[bs_ph,2]) # group the sky samples
# combine the samples
r2_xzy_samp = tf.concat([r2_xzy_samp_gauss,r2_xzy_samp_vonmise,r2_xzy_samp_masses,r2_xzy_samp_sky],axis=1)
r2_xzy_samp = tf.gather(r2_xzy_samp,tf.constant(idx_mask),axis=1)
# VARIABLES LISTS
var_list_VICI = [var for var in tf.trainable_variables() if var.name.startswith("VICI")]
# INITIALISE AND RUN SESSION
init = tf.initialize_all_variables()
session.run(init)
saver_VICI = tf.train.Saver(var_list_VICI)
saver_VICI.restore(session,load_dir)
# ESTIMATE TEST SET RECONSTRUCTION PER-PIXEL APPROXIMATE MARGINAL LIKELIHOOD and draw from q(x|y)
ns = params['n_samples'] # number of samples to save per reconstruction
y_data_test_exp = np.tile(y_data_test,(ns,1))/y_normscale
y_data_test_exp = y_data_test_exp.reshape(-1,params['ndata'],num_det)
run_startt = time.time()
xs, mode_weights = session.run([r2_xzy_samp,r1_weight],feed_dict={bs_ph:ns,y_ph:y_data_test_exp})
run_endt = time.time()
# run_startt = time.time()
# xs, mode_weights = session.run([r2_xzy_samp,r1_weight],feed_dict={bs_ph:ns,y_ph:y_data_test_exp})
# run_endt = time.time()
return xs, (run_endt - run_startt), mode_weights
def _greedy_decode(input_embeddings,
output_vocab_size,
target_end_id,
target_start_id,
output_vocab_embeddings_table,
source_len,
model_config,
mode,
input_copy_mask=None,
clean_output_mask=None):
"""Fast decoding."""
encoder_output = common_layers.linear_transform(
input_embeddings,
output_size=model_config.model_parameters.encoder_dims,
scope="bert_to_transformer")
decode_length = model_config.data_options.max_decode_length
# Expand the inputs in to the beam width.
def symbols_to_logits_fn(logit_indices, current_index):
"""Go from targets to logits."""
logit_indices = tf.expand_dims(logit_indices, 0)
decode_steps = decode_utils.get_decode_steps(logit_indices,
output_vocab_size,
model_config)
target_embeddings = _get_target_embeddings(
input_embeddings, output_vocab_embeddings_table, decode_steps,
model_config)
decoder_output = _build_transformer_decoder(
encoder_output,
source_len,
target_embeddings,
mode,
model_config,
single_step_index=current_index)
logits = _get_action_logits(encoder_output,
decoder_output,
output_vocab_embeddings_table,
output_vocab_size,
model_config,
input_copy_mask=input_copy_mask,
clean_output_mask=clean_output_mask)
# Squeeze batch dimension and length dimension, as both should be 1.
logits = tf.squeeze(logits, axis=[0, 1])
# Shape of logits should now be (output_vocab_size).
return logits
def loop_cond(i, decoded_ids, unused_logprobs):
"""Loop conditional that returns false to stop loop."""
return tf.logical_and(
tf.reduce_all(tf.not_equal(decoded_ids, target_end_id)),
tf.less(i, decode_length))
def inner_loop(i, decoded_ids, logprobs):
"""Decoder function invoked on each while loop iteration."""
logits = symbols_to_logits_fn(decoded_ids, i)
next_id = tf.argmax(logits, axis=0)
softmax = tf.nn.softmax(logits)
extended_vocab_size = tf.shape(softmax)[-1]
mask = tf.one_hot(next_id, extended_vocab_size)
prob = tf.reduce_sum(softmax * mask)
logprob = tf.log(prob)
# Add one-hot values to output Tensors, since values at index > i+1 should
# still be zero.
logprobs += tf.one_hot(i + 1,
decode_length + 1,
on_value=logprob,
dtype=tf.float32)
decoded_ids += tf.one_hot(i + 1,
decode_length + 1,
on_value=next_id,
dtype=tf.int64)
return i + 1, decoded_ids, logprobs
initial_ids = tf.zeros(dtype=tf.int64, shape=[decode_length + 1])
initial_ids += tf.one_hot(0,
decode_length + 1,
on_value=tf.cast(target_start_id, tf.int64))
initial_logprob = tf.zeros(dtype=tf.float32, shape=[decode_length + 1])
initial_i = tf.constant(0)
initial_values = [initial_i, initial_ids, initial_logprob]
_, decoded_ids, logprobs = tf.while_loop(loop_cond, inner_loop,
initial_values)
# Remove <START> symbol.
decoded_ids = decoded_ids[1:]
logprobs = logprobs[1:]
# Sum logprobs to get scores for overall sequence.
logprobs = tf.reduce_sum(logprobs, axis=0)
# Expand decoded_ids and logprobs to reflect beam width dimension of 1.
decoded_ids = tf.expand_dims(decoded_ids, 0)
logprobs = tf.expand_dims(logprobs, 0)
# This is the output dict that the function returns.
output_decode_steps = decode_utils.get_decode_steps(
decoded_ids, output_vocab_size, model_config)
predictions = decode_utils.get_predictions(output_decode_steps)
predictions[constants.SCORES_KEY] = logprobs
return predictions
def train(params, x_data, y_data, x_data_test, y_data_test, y_data_test_noisefree, y_normscale, save_dir, truth_test, bounds, fixed_vals, posterior_truth_test,snrs_test=None):
# if True, do multi-modal
multi_modal = True
# USEFUL SIZES
xsh = np.shape(x_data)
ysh = np.shape(y_data)[1]
n_convsteps = params['n_convsteps']
z_dimension = params['z_dimension']
bs = params['batch_size']
n_weights_r1 = params['n_weights_r1']
n_weights_r2 = params['n_weights_r2']
n_weights_q = params['n_weights_q']
n_modes = params['n_modes']
n_hlayers_r1 = len(params['n_weights_r1'])
n_hlayers_r2 = len(params['n_weights_r2'])
n_hlayers_q = len(params['n_weights_q'])
n_conv_r1 = len(params['n_filters_r1'])
n_conv_r2 = len(params['n_filters_r2'])
n_conv_q = len(params['n_filters_q'])
n_filters_r1 = params['n_filters_r1']
n_filters_r2 = params['n_filters_r2']
n_filters_q = params['n_filters_q']
filter_size_r1 = params['filter_size_r1']
filter_size_r2 = params['filter_size_r2']
filter_size_q = params['filter_size_q']
maxpool_r1 = params['maxpool_r1']
maxpool_r2 = params['maxpool_r2']
maxpool_q = params['maxpool_q']
conv_strides_r1 = params['conv_strides_r1']
conv_strides_r2 = params['conv_strides_r2']
conv_strides_q = params['conv_strides_q']
pool_strides_r1 = params['pool_strides_r1']
pool_strides_r2 = params['pool_strides_r2']
pool_strides_q = params['pool_strides_q']
batch_norm = params['batch_norm']
red = params['reduce']
if n_convsteps != None:
ysh_conv_r1 = int(ysh*n_filters_r1/2**n_convsteps) if red==True else int(ysh/2**n_convsteps)
ysh_conv_r2 = int(ysh*n_filters_r2/2**n_convsteps) if red==True else int(ysh/2**n_convsteps)
ysh_conv_q = int(ysh*n_filters_q/2**n_convsteps) if red==True else int(ysh/2**n_convsteps)
else:
ysh_conv_r1 = int(ysh_r1)
ysh_conv_r2 = int(ysh_r2)
ysh_conv_q = int(ysh_q)
drate = params['drate']
ramp_start = params['ramp_start']
ramp_end = params['ramp_end']
num_det = len(fixed_vals['det'])
# identify the indices of different sets of physical parameters
vonmise_mask, vonmise_idx_mask, vonmise_len = get_param_index(params['inf_pars'],params['vonmise_pars'])
gauss_mask, gauss_idx_mask, gauss_len = get_param_index(params['inf_pars'],params['gauss_pars'])
sky_mask, sky_idx_mask, sky_len = get_param_index(params['inf_pars'],params['sky_pars'])
ra_mask, ra_idx_mask, ra_len = get_param_index(params['inf_pars'],['ra'])
dec_mask, dec_idx_mask, dec_len = get_param_index(params['inf_pars'],['dec'])
m1_mask, m1_idx_mask, m1_len = get_param_index(params['inf_pars'],['mass_1'])
m2_mask, m2_idx_mask, m2_len = get_param_index(params['inf_pars'],['mass_2'])
idx_mask = np.argsort(gauss_idx_mask + vonmise_idx_mask + m1_idx_mask + m2_idx_mask + sky_idx_mask) # + dist_idx_mask)
graph = tf.Graph()
session = tf.Session(graph=graph)
with graph.as_default():
# PLACE HOLDERS
bs_ph = tf.placeholder(dtype=tf.int64, name="bs_ph") # batch size placeholder
x_ph = tf.placeholder(dtype=tf.float32, shape=[None, xsh[1]], name="x_ph") # params placeholder
y_ph = tf.placeholder(dtype=tf.float32, shape=[None, params['ndata'], num_det], name="y_ph")
ramp = tf.placeholder(dtype=tf.float32) # the ramp to slowly increase the KL contribution
# LOAD VICI NEURAL NETWORKS
r1_zy = VICI_encoder.VariationalAutoencoder('VICI_encoder', n_input=params['ndata'], n_output=z_dimension, n_channels=num_det, n_weights=n_weights_r1, # generates params for r1(z|y)
n_modes=n_modes, drate=drate, n_filters=n_filters_r1,
filter_size=filter_size_r1, maxpool=maxpool_r1)
r2_xzy = VICI_decoder.VariationalAutoencoder('VICI_decoder', vonmise_mask, gauss_mask, m1_mask, m2_mask, sky_mask, n_input1=z_dimension,
n_input2=params['ndata'], n_output=xsh[1], n_channels=num_det, n_weights=n_weights_r2,
drate=drate, n_filters=n_filters_r2,
filter_size=filter_size_r2, maxpool=maxpool_r2)
q_zxy = VICI_VAE_encoder.VariationalAutoencoder('VICI_VAE_encoder', n_input1=xsh[1], n_input2=params['ndata'], n_output=z_dimension,
n_channels=num_det, n_weights=n_weights_q, drate=drate,
n_filters=n_filters_q, filter_size=filter_size_q, maxpool=maxpool_q)
tf.set_random_seed(np.random.randint(0,10))
# reduce the y data size
y_conv = y_ph
# GET r1(z|y)
# run inverse autoencoder to generate mean and logvar of z given y data - these are the parameters for r1(z|y)
r1_loc, r1_scale, r1_weight = r1_zy._calc_z_mean_and_sigma(y_conv)
temp_var_r1 = SMALL_CONSTANT + tf.exp(r1_scale)
# define the r1(z|y) mixture model
bimix_gauss = tfd.MixtureSameFamily(
mixture_distribution=tfd.Categorical(logits=r1_weight),
components_distribution=tfd.MultivariateNormalDiag(
loc=r1_loc,
scale_diag=tf.sqrt(temp_var_r1)))
# DRAW FROM r1(z|y) - given the Gaussian parameters generate z samples
r1_zy_samp = bimix_gauss.sample()
# GET q(z|x,y)
q_zxy_mean, q_zxy_log_sig_sq = q_zxy._calc_z_mean_and_sigma(x_ph,y_conv)
# DRAW FROM q(z|x,y)
temp_var_q = SMALL_CONSTANT + tf.exp(q_zxy_log_sig_sq)
mvn_q = tfp.distributions.MultivariateNormalDiag(
loc=q_zxy_mean,
scale_diag=tf.sqrt(temp_var_q))
q_zxy_samp = mvn_q.sample()
# GET r2(x|z,y)
eps = tf.random.normal([bs_ph, params['ndata'], num_det], 0, 1., dtype=tf.float32)
y_ph_ramp = tf.add(tf.multiply(ramp,y_conv), tf.multiply((1.0-ramp), eps))
reconstruction_xzy = r2_xzy.calc_reconstruction(q_zxy_samp,y_ph_ramp)
# ugly but required for now - unpack the r2 output params
r2_xzy_mean_gauss = reconstruction_xzy[0] # truncated gaussian mean
r2_xzy_log_sig_sq_gauss = reconstruction_xzy[1] # truncated gaussian log var
r2_xzy_mean_vonmise = reconstruction_xzy[2] # vonmises means
r2_xzy_log_sig_sq_vonmise = reconstruction_xzy[3] # vonmises log var
r2_xzy_mean_m1 = reconstruction_xzy[4] # m1 mean
r2_xzy_log_sig_sq_m1 = reconstruction_xzy[5] # m1 var
r2_xzy_mean_m2 = reconstruction_xzy[6] # m2 mean (m2 will be conditional on m1)
r2_xzy_log_sig_sq_m2 = reconstruction_xzy[7] # m2 log var (m2 will be conditional on m1)
r2_xzy_mean_sky = reconstruction_xzy[8] # sky mean unit vector (3D)
r2_xzy_log_sig_sq_sky = reconstruction_xzy[9] # sky log var (1D)
# COST FROM RECONSTRUCTION - the masses
# this sets up a joint distribution on m1 and m2 with m2 being conditional on m1
# the ramp eveolves the truncation boundaries from far away to 0->1 for m1 and 0->m1 for m2
if m1_len>0 and m2_len>0:
temp_var_r2_m1 = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_m1) # the safe r2 variance
temp_var_r2_m2 = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_m2)
joint = tfd.JointDistributionSequential([ # shrink the truncation with the ramp
tfd.Independent(tfd.TruncatedNormal(r2_xzy_mean_m1,tf.sqrt(temp_var_r2_m1),-GAUSS_RANGE*(1.0-ramp),GAUSS_RANGE*(1.0-ramp) + 1.0),reinterpreted_batch_ndims=0), # m1
lambda b0: tfd.Independent(tfd.TruncatedNormal(r2_xzy_mean_m2,tf.sqrt(temp_var_r2_m2),-GAUSS_RANGE*(1.0-ramp),GAUSS_RANGE*(1.0-ramp) + ramp*b0),reinterpreted_batch_ndims=0)], # m2
)
reconstr_loss_masses = joint.log_prob((tf.boolean_mask(x_ph,m1_mask,axis=1),tf.boolean_mask(x_ph,m2_mask,axis=1)))
# COST FROM RECONSTRUCTION - Truncated Gaussian parts
# this sets up a loop over uncorreltaed truncated Gaussians
# the ramp evolves the boundaries from far away to 0->1
if gauss_len>0:
temp_var_r2_gauss = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_gauss)
gauss_x = tf.boolean_mask(x_ph,gauss_mask,axis=1)
@tf.function
def truncnorm(i,lp): # we set up a function that adds the log-likelihoods and also increments the counter
loc = tf.slice(r2_xzy_mean_gauss,[0,i],[-1,1])
std = tf.sqrt(tf.slice(temp_var_r2_gauss,[0,i],[-1,1]))
pos = tf.slice(gauss_x,[0,i],[-1,1])
tn = tfd.TruncatedNormal(loc,std,-GAUSS_RANGE*(1.0-ramp),GAUSS_RANGE*(1.0-ramp) + 1.0) # shrink the truncation with the ramp
return [i+1, lp + tn.log_prob(pos)]
# we do the loop until we've hit all the truncated gaussian parameters - i starts at 0 and the logprob starts at 0
_,reconstr_loss_gauss = tf.while_loop(lambda i,reconstr_loss_gauss: i<gauss_len, truncnorm, [0,tf.zeros([bs_ph],dtype=tf.dtypes.float32)])
# COST FROM RECONSTRUCTION - Von Mises parts for single parameters that wrap over 2pi
if vonmise_len>0:
temp_var_r2_vonmise = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_vonmise)
con = tf.reshape(tf.math.reciprocal(temp_var_r2_vonmise),[-1,vonmise_len]) # modelling wrapped scale output as log variance - convert to concentration
von_mises = tfp.distributions.VonMises(
loc=2.0*np.pi*(tf.reshape(r2_xzy_mean_vonmise,[-1,vonmise_len])-0.5), # remap 0>1 mean onto -pi->pi range
concentration=con)
reconstr_loss_vonmise = von_mises.log_prob(2.0*np.pi*(tf.reshape(tf.boolean_mask(x_ph,vonmise_mask,axis=1),[-1,vonmise_len]) - 0.5)) # 2pi is the von mises input range
reconstr_loss_vonmise = reconstr_loss_vonmise[:,0] + reconstr_loss_vonmise[:,1]
# computing Gaussian likelihood for von mises parameters to be faded away with the ramp
gauss_vonmises = tfp.distributions.MultivariateNormalDiag(
loc=r2_xzy_mean_vonmise,
scale_diag=tf.sqrt(temp_var_r2_vonmise))
reconstr_loss_gauss_vonmise = gauss_vonmises.log_prob(tf.boolean_mask(x_ph,vonmise_mask,axis=1))
reconstr_loss_vonmise = ramp*reconstr_loss_vonmise + (1.0-ramp)*reconstr_loss_gauss_vonmise # start with a Gaussian model and fade in the true vonmises
else:
reconstr_loss_vonmise = 0.0
# COST FROM RECONSTRUCTION - Von Mises Fisher (sky) parts
if sky_len>0:
temp_var_r2_sky = SMALL_CONSTANT + tf.exp(r2_xzy_log_sig_sq_sky)
con = tf.reshape(tf.math.reciprocal(temp_var_r2_sky),[bs_ph]) # modelling wrapped scale output as log variance - only 1 concentration parameter for all sky
loc_xyz = tf.math.l2_normalize(tf.reshape(r2_xzy_mean_sky,[-1,3]),axis=1) # take the 3 output mean params from r2 and normalse so they are a unit vector
von_mises_fisher = tfp.distributions.VonMisesFisher(
mean_direction=loc_xyz,
concentration=con)
ra_sky = 2.0*np.pi*tf.reshape(tf.boolean_mask(x_ph,ra_mask,axis=1),[-1,1]) # convert the scaled 0->1 true RA value back to radians
dec_sky = np.pi*(tf.reshape(tf.boolean_mask(x_ph,dec_mask,axis=1),[-1,1]) - 0.5) # convert the scaled 0>1 true dec value back to radians
xyz_unit = tf.reshape(tf.concat([tf.cos(ra_sky)*tf.cos(dec_sky),tf.sin(ra_sky)*tf.cos(dec_sky),tf.sin(dec_sky)],axis=1),[-1,3]) # construct the true parameter unit vector
reconstr_loss_sky = von_mises_fisher.log_prob(tf.math.l2_normalize(xyz_unit,axis=1)) # normalise it for safety (should already be normalised) and compute the logprob
# computing Gaussian likelihood for von mises Fisher (sky) parameters to be faded away with the ramp
mean_ra = tf.math.floormod(tf.atan2(tf.slice(loc_xyz,[0,1],[-1,1]),tf.slice(loc_xyz,[0,0],[-1,1])),2.0*np.pi)/(2.0*np.pi) # convert the unit vector to scaled 0->1 RA
mean_dec = (tf.asin(tf.slice(loc_xyz,[0,2],[-1,1])) + 0.5*np.pi)/np.pi # convert the unit vector to scaled 0->1 dec
mean_sky = tf.reshape(tf.concat([mean_ra,mean_dec],axis=1),[bs_ph,2]) # package up the scaled RA and dec
gauss_sky = tfp.distributions.MultivariateNormalDiag(
loc=mean_sky,
scale_diag=tf.concat([tf.sqrt(temp_var_r2_sky),tf.sqrt(temp_var_r2_sky)],axis=1)) # use the same 1D concentration parameter for both RA and dec dimensions
reconstr_loss_gauss_sky = gauss_sky.log_prob(tf.boolean_mask(x_ph,sky_mask,axis=1)) # compute the logprob at the true sky location
reconstr_loss_sky = ramp*reconstr_loss_sky + (1.0-ramp)*reconstr_loss_gauss_sky # start with a Gaussian model and fade in the true vonmises Fisher
cost_R = -1.0*tf.reduce_mean(reconstr_loss_gauss + reconstr_loss_vonmise + reconstr_loss_masses + reconstr_loss_sky)
r2_xzy_mean = tf.gather(tf.concat([r2_xzy_mean_gauss,r2_xzy_mean_vonmise,r2_xzy_mean_m1,r2_xzy_mean_m2,r2_xzy_mean_sky],axis=1),tf.constant(idx_mask),axis=1) # put the elements back in order
r2_xzy_scale = tf.gather(tf.concat([r2_xzy_log_sig_sq_gauss,r2_xzy_log_sig_sq_vonmise,r2_xzy_log_sig_sq_m1,r2_xzy_log_sig_sq_m2,r2_xzy_log_sig_sq_sky],axis=1),tf.constant(idx_mask),axis=1) # put the elements back in order
log_q_q = mvn_q.log_prob(q_zxy_samp)
log_r1_q = bimix_gauss.log_prob(q_zxy_samp) # evaluate the log prob of r1 at the q samples
KL = tf.reduce_mean(log_q_q - log_r1_q) # average over batch
# THE VICI COST FUNCTION
COST = cost_R + ramp*KL #+ L1_weight_reg)
# VARIABLES LISTS
var_list_VICI = [var for var in tf.trainable_variables() if var.name.startswith("VICI")]
# DEFINE OPTIMISER (using ADAM here)
optimizer = tf.train.AdamOptimizer(params['initial_training_rate'])
# optimizer = tf.train.RMSPropOptimizer(params['initial_training_rate'])
minimize = optimizer.minimize(COST,var_list = var_list_VICI)
# INITIALISE AND RUN SESSION
init = tf.global_variables_initializer()
session.run(init)
saver = tf.train.Saver()
print('Training Inference Model...')
# START OPTIMISATION OF OELBO
indices_generator = batch_manager.SequentialIndexer(params['batch_size'], xsh[0])
plotdata = []
load_chunk_it = 1
for i in range(params['num_iterations']):
next_indices = indices_generator.next_indices()
# if load chunks true, load in data by chunks
if params['load_by_chunks'] == True and i == int(params['load_iteration']*load_chunk_it):
x_data, y_data = load_chunk(params['train_set_dir'],params['inf_pars'],params,bounds,fixed_vals)
load_chunk_it += 1
# Make noise realizations and add to training data
next_x_data = x_data[next_indices,:]
if params['reduce'] == True or n_conv_r1 != None:
next_y_data = y_data[next_indices,:] + np.random.normal(0,1,size=(params['batch_size'],int(params['ndata']),len(fixed_vals['det'])))
else:
next_y_data = y_data[next_indices,:] + np.random.normal(0,1,size=(params['batch_size'],int(params['ndata']*len(fixed_vals['det']))))
next_y_data /= y_normscale # required for fast convergence
if params['by_channel'] == False:
next_y_data_new = []
for sig in next_y_data:
next_y_data_new.append(sig.T)
next_y_data = np.array(next_y_data_new)
del next_y_data_new
# restore session if wanted
if params['resume_training'] == True and i == 0:
print(save_dir)
saver.restore(session, save_dir)
# compute the ramp value
rmp = 0.0
if params['ramp'] == True:
if i>ramp_start:
rmp = (np.log10(float(i)) - np.log10(ramp_start))/(np.log10(ramp_end) - np.log10(ramp_start))
if i>ramp_end:
rmp = 1.0
else:
rmp = 1.0
# train the network
session.run(minimize, feed_dict={bs_ph:bs, x_ph:next_x_data, y_ph:next_y_data, ramp:rmp})
# if we are in a report iteration extract cost function values
if i % params['report_interval'] == 0 and i > 0:
# get training loss
cost, kl, AB_batch = session.run([cost_R, KL, r1_weight], feed_dict={bs_ph:bs, x_ph:next_x_data, y_ph:next_y_data, ramp:rmp})
# get validation loss on test set
cost_val, kl_val = session.run([cost_R, KL], feed_dict={bs_ph:y_data_test.shape[0], x_ph:x_data_test, y_ph:y_data_test/y_normscale, ramp:rmp})
plotdata.append([cost,kl,cost+kl,cost_val,kl_val,cost_val+kl_val])
try:
# Make loss plot
plt.figure()
xvec = params['report_interval']*np.arange(np.array(plotdata).shape[0])
plt.semilogx(xvec,np.array(plotdata)[:,0],label='recon',color='blue',alpha=0.5)
plt.semilogx(xvec,np.array(plotdata)[:,1],label='KL',color='orange',alpha=0.5)
plt.semilogx(xvec,np.array(plotdata)[:,2],label='total',color='green',alpha=0.5)
plt.semilogx(xvec,np.array(plotdata)[:,3],label='recon_val',color='blue',linestyle='dotted')
plt.semilogx(xvec,np.array(plotdata)[:,4],label='KL_val',color='orange',linestyle='dotted')
plt.semilogx(xvec,np.array(plotdata)[:,5],label='total_val',color='green',linestyle='dotted')
plt.ylim([-25,15])
plt.xlabel('iteration')
plt.ylabel('cost')
plt.legend()
plt.savefig('%s/latest_%s/cost_%s.png' % (params['plot_dir'],params['run_label'],params['run_label']))
plt.ylim([np.min(np.array(plotdata)[-int(0.9*np.array(plotdata).shape[0]):,0]), np.max(np.array(plotdata)[-int(0.9*np.array(plotdata).shape[0]):,1])])
plt.savefig('%s/latest_%s/cost_zoom_%s.png' % (params['plot_dir'],params['run_label'],params['run_label']))
plt.close('all')
except:
pass
if params['print_values']==True:
print('--------------------------------------------------------------')
print('Iteration:',i)
print('Training -ELBO:',cost)
print('Validation -ELBO:',cost_val)
print('Training KL Divergence:',kl)
print('Validation KL Divergence:',kl_val)
print('Training Total cost:',kl + cost)
print('Validation Total cost:',kl_val + cost_val)
print()
# terminate training if vanishing gradient
if np.isnan(kl+cost) == True or np.isnan(kl_val+cost_val) == True or kl+cost > int(1e5):
print('Network is returning NaN values')
print('Terminating network training')
if params['hyperparam_optim'] == True:
save_path = saver.save(session,save_dir)
return 5000.0, session, saver, save_dir
else:
exit()
try:
# Save loss plot data
np.savetxt(save_dir.split('/')[0] + '/loss_data.txt', np.array(plotdata))
except FileNotFoundError as err:
print(err)
pass
if i % params['save_interval'] == 0 and i > 0:
if params['hyperparam_optim'] == False:
# Save model
save_path = saver.save(session,save_dir)
else:
pass
# stop hyperparam optim training it and return KL divergence as figure of merit
if params['hyperparam_optim'] == True and i == params['hyperparam_optim_stop']:
save_path = saver.save(session,save_dir)
return np.array(plotdata)[-1,2], session, saver, save_dir
if i % params['plot_interval'] == 0 and i>0:
n_mode_weight_copy = 100 # must be a multiple of 50
# just run the network on the test data
for j in range(params['r']*params['r']):
# The trained inverse model weights can then be used to infer a probability density of solutions given new measurements
if params['reduce'] == True or params['n_filters_r1'] != None:
XS, dt, _ = VICI_inverse_model.run(params, y_data_test[j].reshape([1,y_data_test.shape[1],y_data_test.shape[2]]), np.shape(x_data_test)[1],
y_normscale,
"inverse_model_dir_%s/inverse_model.ckpt" % params['run_label'])
else:
XS, dt, _ = VICI_inverse_model.run(params, y_data_test[j].reshape([1,-1]), np.shape(x_data_test)[1],
y_normscale,
"inverse_model_dir_%s/inverse_model.ckpt" % params['run_label'])
print('Runtime to generate {} samples = {} sec'.format(params['n_samples'],dt))
# Make corner plots
# Get corner parnames to use in plotting labels
parnames = []
for k_idx,k in enumerate(params['rand_pars']):
if np.isin(k, params['inf_pars']):
parnames.append(params['cornercorner_parnames'][k_idx])
defaults_kwargs = dict(
bins=50, smooth=0.9, label_kwargs=dict(fontsize=16),
title_kwargs=dict(fontsize=16),
truth_color='tab:orange', quantiles=[0.16, 0.84],
levels=(0.68,0.90,0.95), density=True,
plot_density=False, plot_datapoints=True,
max_n_ticks=3)
figure = corner.corner(posterior_truth_test[j], **defaults_kwargs,labels=parnames,
color='tab:blue',truths=x_data_test[j,:],
show_titles=True)
# compute weights, otherwise the 1d histograms will be different scales, could remove this
corner.corner(XS,**defaults_kwargs,labels=parnames,
color='tab:red',
fill_contours=True,
show_titles=True, fig=figure)
plt.savefig('%s/corner_plot_%s_%d-%d.png' % (params['plot_dir'],params['run_label'],i,j))
plt.savefig('%s/latest_%s/corner_plot_%s_%d.png' % (params['plot_dir'],params['run_label'],params['run_label'],j))
plt.close('all')
print('Made corner plot %d' % j)
return
def __call__(self,
learner,
meta_batches=None,
inner_batches=None,
init_state=None,
unroll_n_steps=None):
if unroll_n_steps is None:
unroll_n_steps = self.unroll_n_steps
else:
print("Using passed in unroll steps")
if inner_batches is None:
inner_batches = self.inner_batches
else:
# convert the batches object to a tensorarray.
def to_ta(t):
return tf.TensorArray(dtype=t.dtype,
size=self.unroll_n_steps).unstack(t)
inner_batches = nest.map_structure(to_ta, inner_batches)
if meta_batches is None:
meta_batches = self.meta_batches
else:
# convert the batches object to a tensorarray.
def ml_to_ta(t):
return tf.TensorArray(dtype=t.dtype,
size=self.meta_loss_evals *
self.unroll_n_steps).unstack(t)
meta_batches = nest.map_structure(ml_to_ta, meta_batches)
if init_state is None:
init_state = learner.current_state()
init_state = tf_utils.force_copy(init_state)
current_state = (tf.constant(0, dtype=tf.int32),
tf.constant(0., dtype=tf.float32), init_state)
def loss_and_next_state_fn((idx, l, state)):
batch = self.get_batch(idx, batches=inner_batches)
l, s = learner.loss_and_next_state(state, loss_state=batch)
return (idx + 1, l, s)
def accumulate_fn((idx, _, s), (a_meta, a_inner)):
"""Accumulate loss for fold learning process."""
cond = lambda i, a: tf.less(i, self.meta_loss_evals)
def body_meta(i, a):
# minus 1 as this takes the following step.
batch = self.get_batch((idx - 1) * (self.meta_loss_evals) + i,
batches=meta_batches)
return (i + 1, a + learner.meta_loss(s, loss_state=batch))
_, extra_losses = tf.while_loop(cond, body_meta, loop_vars=[0, 0.])
def body_inner(i, a):
# minus 1 as this takes the following step.
batch = self.get_batch((idx - 1) * (self.meta_loss_evals) + i,
batches=meta_batches)
return (i + 1, a + learner.inner_loss(s, loss_state=batch))
_, inner_losses = tf.while_loop(cond,
body_inner,
loop_vars=[0, 0.])
return a_meta + extra_losses, a_inner + inner_losses
def _slow_greedy_infer_guess_and_check(self, features, decode_length):
assert self._hparams.block_size > 0
assert self._hparams.force_full_predict
assert self._hparams.sampling_method == "argmax"
assert self._decode_hparams.batch_size == 1
assert self._decode_hparams.block_size > 0
assert self._decode_hparams.block_size <= self._hparams.block_size
assert self._decode_hparams.guess_and_check_top_k > 0
inputs_old = features["inputs"]
assert "targets" not in features
assert len(features["inputs"].shape) in [3, 4]
if len(features["inputs"].shape) < 4:
features["inputs"] = tf.expand_dims(features["inputs"], 2)
block_size = self._decode_hparams.block_size
decode_length += tf.shape(features["inputs"])[1]
def while_exit_cond(result, length): # pylint: disable=unused-argument
return tf.logical_and(
length < decode_length,
tf.reduce_all(
tf.not_equal(result[:, :length, :, :],
text_encoder.EOS_ID)))
def infer_step(result, length):
"""Inference step."""
def print_info(result, length, new_length):
vocab = self.problem_hparams.vocabulary["targets"]
tf.logging.info(
"length=%s new_length=%s length_diff=%s new_suffix=%s",
length,
new_length,
new_length - length,
str([
vocab._subtoken_id_to_subtoken_string(index) # pylint: disable=protected-access
for index in result[0, -block_size:, 0,
0][:new_length - length]
]).decode("unicode-escape"),
)
features["targets"] = tf.pad(result,
[[0, 0], [0, 1], [0, 0], [0, 0]])
samples, logits, losses = self.sample(features) # pylint: disable=unused-variable
_, top_k_indices = tf.nn.top_k(
logits[:, :-1, :1, :, :],
k=self._decode_hparams.guess_and_check_top_k)
in_top_k = tf.reduce_any(tf.equal(tf.to_int64(top_k_indices),
tf.expand_dims(result, 4)),
axis=4)
eos_cumsum = tf.cumsum(tf.to_int32(
tf.equal(result, text_encoder.EOS_ID)),
axis=1)
after_eos = tf.greater(common_layers.shift_right(eos_cumsum), 0)
correct = tf.logical_and(in_top_k, tf.logical_not(after_eos))
correct_cumsum = tf.cumsum(tf.to_int32(correct), axis=1)
perfect_cumsum = 1 + tf.range(tf.shape(correct)[1])
for axis in [0, 2, 3]:
perfect_cumsum = tf.expand_dims(perfect_cumsum, axis=axis)
new_length = tf.reduce_sum(tf.to_int32(
tf.equal(correct_cumsum, perfect_cumsum)),
axis=1)
new_length = tf.squeeze(new_length, axis=[0, 1, 2])
new_length = tf.minimum(new_length, decode_length)
new_result = tf.concat([
result[:, :new_length, :, :],
tf.reshape(samples[:, new_length, :block_size, :],
[1, block_size, 1, 1])
],
axis=1)
with tf.control_dependencies(
[tf.py_func(print_info, [result, length, new_length], [])]):
new_result = tf.identity(new_result)
return new_result, new_length
result = tf.zeros((1, 0, 1, 1), dtype=tf.int64)
length = tf.squeeze(tf.zeros(1, dtype=tf.int32))
result, length = tf.while_loop(while_exit_cond,
infer_step, [result, length],
shape_invariants=[
tf.TensorShape([1, None, 1, 1]),
tf.TensorShape([]),
],
back_prop=False,
parallel_iterations=1)
result = result[:, :length, :, :]
features["inputs"] = inputs_old
return {
"outputs": result,
"scores": None,
}
def pgd_attack(loss_fn,
input_image,
epsilon,
num_steps,
optimizer=UnrolledGradientDescent(),
project_perturbation=_project_perturbation,
image_bounds=None,
random_init=1.):
"""Projected gradient descent for generating adversarial images.
Args:
loss_fn: A callable which takes `input_image` and `label` as arguments, and
returns the loss, a scalar Tensor, we will be minimized
input_image: Tensor, a batch of images
epsilon: float, the L-infinity norm of the maximum allowable perturbation
num_steps: int, the number of steps of gradient descent
optimizer: An `UnrolledOptimizer` object
project_perturbation: A function, which will be used to enforce some
constraint. It should have the same signature as `_project_perturbation`.
Note that if you use a custom projection function, you should double-check
your implementation, since an incorrect implementation will not error,
and will appear to work fine.
image_bounds: A pair of floats: minimum and maximum pixel value. If None
(default), the bounds are assumed to be 0 and 1.
random_init: Probability of starting from random location rather than
nominal input image.
Returns:
adversarial version of `input_image`, with L-infinity difference less than
epsilon, which tries to minimize loss_fn.
"""
image_bounds = image_bounds or (0., 1.)
random_shape = [tf.shape(input_image)[0]
] + [1] * (len(input_image.shape) - 1)
use_random_init = tf.cast(
tf.random_uniform(random_shape) < float(random_init), tf.float32)
init_perturbation = use_random_init * tf.random_uniform(
tf.shape(input_image), minval=-epsilon, maxval=epsilon)
init_perturbation = project_perturbation(init_perturbation, epsilon,
input_image, image_bounds)
init_optim_state = optimizer.init_state([init_perturbation])
def loop_body(i, perturbation, flat_optim_state):
"""Update perturbation to input image."""
optim_state = nest.pack_sequence_as(structure=init_optim_state,
flat_sequence=flat_optim_state)
loss = loss_fn(input_image + perturbation)
new_perturbation_list, new_optim_state = optimizer.minimize(
loss, [perturbation], optim_state)
projected_perturbation = project_perturbation(new_perturbation_list[0],
epsilon, input_image,
image_bounds)
return i + 1, projected_perturbation, nest.flatten(new_optim_state)
def cond(i, *_):
return tf.less(i, num_steps)
flat_init_optim_state = nest.flatten(init_optim_state)
_, final_perturbation, _ = tf.while_loop(
cond,
loop_body,
loop_vars=[tf.constant(0.), init_perturbation, flat_init_optim_state],
parallel_iterations=1,
back_prop=False)
adversarial_image = input_image + final_perturbation
return tf.stop_gradient(adversarial_image)
def _create_gradient_ascent_action_tensors(self, eps=1e-6):
"""Create tensorflow operations for gradient ascent max_actions."""
self._action_init_tensor = tf.placeholder(dtype=tf.float32,
name="action_init_tensor",
shape=(None,
self.action_dim))
self._tolerance_tensor = tf.placeholder(dtype=tf.float32,
name="tolerance_tensor",
shape=())
with tf.variable_scope("{}_{}".format(self.name, "action_variable")):
self._action_variable_tensor = tf.Variable(
initial_value=self._action_init_tensor,
trainable=True,
name="action_var")
# gradient ascentd
self.cost_now = -tf.reduce_mean(
self._build_q_function_net(self._state_tensor,
self._action_variable_tensor))
self.action_gradient = tf.gradients(
self.cost_now, self._action_variable_tensor)[0]
# normalize the gradient
self.normalized_action_gradient = self.action_gradient / (
eps + tf.linalg.norm(self.action_gradient))
if self.sufficient_ascent_flag:
def cond_sufficient_descent(learning_rate_action,
cond_sufficient_descent,
cost_perturbed):
del cost_perturbed
cond_1 = tf.math.greater(learning_rate_action,
self.learning_rate_action)
return tf.math.logical_and(
cond_1, tf.logical_not(cond_sufficient_descent))
def body_sufficient_descent(learning_rate_action,
cond_sufficient_descent,
cost_perturbed,
c_armijo=0.01,
c_goldstein=0.25,
lr_decay=0.1):
"""Function for sufficient descent."""
del cond_sufficient_descent, cost_perturbed
action_variable_perturbed_tensor = self._action_variable_tensor - \
learning_rate_action * self.normalized_action_gradient
cost_perturbed = -tf.reduce_mean(
self._build_q_function_net(
self._state_tensor,
action_variable_perturbed_tensor))
# Here the negative gradient corresponds to maximization of Q fun.
sufficient_descent = tf.reduce_sum(
self.action_gradient *
-self.normalized_action_gradient)
goldstein_condition = tf.greater_equal(
cost_perturbed, self.cost_now + c_goldstein *
learning_rate_action * sufficient_descent)
armijo_condition = tf.less_equal(
cost_perturbed, self.cost_now +
c_armijo * learning_rate_action * sufficient_descent)
cond_sufficient_descent = tf.logical_and(
goldstein_condition, armijo_condition)
with tf.control_dependencies([cond_sufficient_descent]):
learning_rate_action = learning_rate_action * lr_decay
return learning_rate_action, cond_sufficient_descent, cost_perturbed
# Construct the while loop.
def cond_gradient_ascent(itr, cond_terminate):
cond_1 = tf.math.less(itr, self.action_maximization_iterations)
return tf.math.logical_and(cond_1,
tf.logical_not(cond_terminate))
def body_gradient_ascent(itr, cond_terminate, lr_init=100.0):
"""Function for gradient descent."""
del cond_terminate
if self.sufficient_ascent_flag:
# first calculate sufficeint descent
result_sufficient_descent = tf.while_loop(
cond_sufficient_descent, body_sufficient_descent, [
tf.constant(lr_init),
tf.constant(False),
tf.constant(np.inf)
])
lr_action = result_sufficient_descent[0]
cost_perturbed = result_sufficient_descent[2]
cond_terminate = tf.less_equal(
tf.math.abs(cost_perturbed - self.cost_now),
self._tolerance_tensor)
else:
# no sufficient descent step
lr_action = self.learning_rate_ga
action_variable_perturbed_tensor = self._action_variable_tensor - \
lr_action * self.normalized_action_gradient
cost_perturbed = -tf.reduce_mean(
self._build_q_function_net(
self._state_tensor,
action_variable_perturbed_tensor))
cond_terminate = tf.less_equal(
tf.math.abs(cost_perturbed - self.cost_now),
self._tolerance_tensor)
train_op = tf.train.GradientDescentOptimizer(
learning_rate=lr_action).apply_gradients(
grads_and_vars=[(self.normalized_action_gradient,
self._action_variable_tensor)])
# Ensure that the update is applied before continuing.
with tf.control_dependencies([train_op]):
itr = itr + 1
return itr, cond_terminate
self.cost_optimizer = tf.while_loop(
cond_gradient_ascent, body_gradient_ascent,
[tf.constant(0), tf.constant(False)])
self.action_init_op = tf.initializers.variables(
tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES,
scope="{}_{}".format(self.name,
"action_variable")))
def _build(self, inputs, labels):
batch_size, input_shape, duplicated_inputs = self.prepare_inputs(
inputs)
if (self._max_specifications > 0 and self._max_specifications <
self._specification.num_specifications):
num_specs = self._max_specifications
model_logits = self._eval_fn(inputs)
bounds = self._specification.evaluate(model_logits)
_, idx = tf.math.top_k(bounds, k=num_specs, sorted=False)
if self._random_specifications:
idx = tf.random.uniform(
shape=tf.shape(idx),
maxval=self._specification.num_specifications,
dtype=idx.dtype)
idx = tf.tile(tf.expand_dims(idx, 0), [self._num_restarts, 1, 1])
def select_fn(x, i):
return tf.squeeze(tf.gather(x,
tf.expand_dims(idx[:, :, i], -1),
batch_dims=len(idx.shape) - 1),
axis=-1)
else:
num_specs = self._specification.num_specifications
select_fn = lambda x, i: x[:, :, i]
def objective_fn(x):
model_logits = self._eval_fn(x) # [restarts * batch_size, output].
model_logits = tf.reshape(model_logits,
[self._num_restarts, batch_size, -1])
# Output has dimension [num_restarts, batch_size, num_specifications].
return self._specification.evaluate(model_logits)
def flat_objective_fn(x):
return _maximize_margin(objective_fn(x))
def build_loss_fn(idx):
def _reduced_loss_fn(x):
# Pick worse attack, output has shape [num_restarts, batch_size].
return -tf.reduce_sum(select_fn(objective_fn(x), idx))
return _reduced_loss_fn
if _is_spsa_optimizer(self._optimizer_builder):
raise ValueError('"UnrolledSPSA*" unsupported in '
'MultiTargetedPGDAttack')
optimizer = self._optimizer_builder(lr=self._lr, lr_fn=self._lr_fn)
# Run a separate PGD attack for each specification.
def cond(spec_idx, unused_attack, success):
# If we are already successful, we break.
return tf.logical_and(spec_idx < num_specs,
tf.logical_not(tf.reduce_all(success)))
def body(spec_idx, attack, success):
"""Runs a separate PGD attack for each specification."""
adversarial_input = pgd_attack(
build_loss_fn(spec_idx),
duplicated_inputs,
epsilon=self._epsilon,
num_steps=self._num_steps,
image_bounds=self._input_bounds,
random_init=self._random_init,
optimizer=optimizer,
project_perturbation=self._project_perturbation)
new_attack = self.find_worst_attack(flat_objective_fn,
adversarial_input, batch_size,
input_shape)
new_logits = self._eval_fn(new_attack)
# Count the number of sample that violate any specification.
new_success = _any_greater(
self._specification.evaluate(new_logits))
# The first iteration always sets the attack and logits.
use_new_values = tf.logical_or(tf.equal(spec_idx, 0), new_success)
print_op = tf.print('Processed specification #', spec_idx)
with tf.control_dependencies([print_op]):
new_spec_idx = spec_idx + 1
return (new_spec_idx, tf.where(use_new_values, new_attack, attack),
tf.logical_or(success, new_success))
_, self._attack, self._success = tf.while_loop(
cond,
body,
back_prop=False,
parallel_iterations=1,
loop_vars=[
tf.constant(0, dtype=tf.int32),
inputs,
tf.zeros([tf.shape(inputs)[0]], dtype=tf.bool),
])
self._logits = self._eval_fn(self._attack, mode='final')
return self._attack
def ssd_decode_and_crop(image_buffer, boxes, classes, raw_shape):
"""Crop image randomly and decode the cropped region.
This function will crop an image to meet the following requirements:
1. height to width ratio between 0.5 and 2;
2. IoUs of some boxes exceed specified threshold;
3. At least one box center is in the cropped region.
We defer the jpeg decoding task until after the crop to avoid wasted work.
Reference: https://github.com/chauhan-utk/ssd.DomainAdaptation
Args:
image_buffer: Tensor tf.string containing the contents of a JPEG file.
boxes: Tensor tf.float32 of shape [num_boxes, 4], containing coordinates of
object bounding boxes.
classes: Tensor tf.int64 of shape [num_boxes, 1], containing class labels
of objects.
raw_shape: [height, width, 3].
Returns:
resized_image: decoded, cropped, and resized image Tensor tf.float32 of
shape [ssd_constants.IMAGE_SIZE, ssd_constants.IMAGE_SIZE, 3], value
range 0--255.
cropped_boxes: box coordinates for objects in the cropped region.
cropped_classes: class labels for objects in the cropped region.
"""
num_boxes = tf.shape(boxes)[0]
def no_crop_check():
return (tf.random_uniform(
shape=(), minval=0, maxval=1, dtype=tf.float32) <
ssd_constants.P_NO_CROP_PER_PASS)
def no_crop_proposal():
return (
tf.ones((), tf.bool),
tf.convert_to_tensor([0, 0, 1, 1], dtype=tf.float32),
tf.ones((num_boxes, ), tf.bool),
)
def crop_proposal():
rand_vec = lambda minval, maxval: tf.random_uniform(shape=(
ssd_constants.NUM_CROP_PASSES, 1),
minval=minval,
maxval=maxval,
dtype=tf.float32)
width, height = rand_vec(0.3, 1), rand_vec(0.3, 1)
left, top = rand_vec(0, 1 - width), rand_vec(0, 1 - height)
right = left + width
bottom = top + height
ltrb = tf.concat([left, top, right, bottom], axis=1)
min_iou = tf.random_shuffle(ssd_constants.CROP_MIN_IOU_CHOICES)[0]
ious = calc_iou_tensor(ltrb, boxes)
# discard any bboxes whose center not in the cropped image
xc, yc = [
tf.tile(0.5 * (boxes[:, i + 0] + boxes[:, i + 2])[tf.newaxis, :],
(ssd_constants.NUM_CROP_PASSES, 1)) for i in range(2)
]
masks = tf.reduce_all(tf.stack([
tf.greater(xc, tf.tile(left, (1, num_boxes))),
tf.less(xc, tf.tile(right, (1, num_boxes))),
tf.greater(yc, tf.tile(top, (1, num_boxes))),
tf.less(yc, tf.tile(bottom, (1, num_boxes))),
],
axis=2),
axis=2)
# Checks of whether a crop is valid.
valid_aspect = tf.logical_and(tf.less(height / width, 2),
tf.less(width / height, 2))
valid_ious = tf.reduce_all(tf.greater(ious, min_iou),
axis=1,
keepdims=True)
valid_masks = tf.reduce_any(masks, axis=1, keepdims=True)
valid_all = tf.cast(
tf.reduce_all(tf.concat([valid_aspect, valid_ious, valid_masks],
axis=1),
axis=1), tf.int32)
# One indexed, as zero is needed for the case of no matches.
index = tf.range(1, 1 + ssd_constants.NUM_CROP_PASSES, dtype=tf.int32)
# Either one-hot, or zeros if there is no valid crop.
selection = tf.equal(tf.reduce_max(index * valid_all), index)
use_crop = tf.reduce_any(selection)
output_ltrb = tf.reduce_sum(tf.multiply(
ltrb,
tf.tile(tf.cast(selection, tf.float32)[:, tf.newaxis], (1, 4))),
axis=0)
output_masks = tf.reduce_any(tf.logical_and(
masks, tf.tile(selection[:, tf.newaxis], (1, num_boxes))),
axis=0)
return use_crop, output_ltrb, output_masks
def proposal(*args):
return tf.cond(
pred=no_crop_check(),
true_fn=no_crop_proposal,
false_fn=crop_proposal,
)
_, crop_bounds, box_masks = tf.while_loop(
cond=lambda x, *_: tf.logical_not(x),
body=proposal,
loop_vars=[
tf.zeros((), tf.bool),
tf.zeros((4, ), tf.float32),
tf.zeros((num_boxes, ), tf.bool)
],
)
filtered_boxes = tf.boolean_mask(boxes, box_masks, axis=0)
mlperf.logger.log(key=mlperf.tags.NUM_CROPPING_ITERATIONS,
value=ssd_constants.NUM_CROP_PASSES)
# Clip boxes to the cropped region.
filtered_boxes = tf.stack([
tf.maximum(filtered_boxes[:, 0], crop_bounds[0]),
tf.maximum(filtered_boxes[:, 1], crop_bounds[1]),
tf.minimum(filtered_boxes[:, 2], crop_bounds[2]),
tf.minimum(filtered_boxes[:, 3], crop_bounds[3]),
],
axis=1)
left = crop_bounds[0]
top = crop_bounds[1]
width = crop_bounds[2] - left
height = crop_bounds[3] - top
cropped_boxes = tf.stack([
(filtered_boxes[:, 0] - left) / width,
(filtered_boxes[:, 1] - top) / height,
(filtered_boxes[:, 2] - left) / width,
(filtered_boxes[:, 3] - top) / height,
],
axis=1)
# crop_window containing integer coordinates of cropped region. A normalized
# coordinate value of y should be mapped to the image coordinate at
# y * (height - 1).
raw_shape = tf.cast(raw_shape, tf.float32)
crop_window = tf.stack([
left * (raw_shape[0] - 1), top * (raw_shape[1] - 1),
width * raw_shape[0], height * raw_shape[1]
])
crop_window = tf.cast(crop_window, tf.int32)
# Fused op only decodes the cropped portion of an image
cropped_image = tf.image.decode_and_crop_jpeg(image_buffer,
crop_window,
channels=3)
# Resize converts image dtype from uint8 to float32, without rescaling values.
resized_image = tf.image.resize_images(
cropped_image, [ssd_constants.IMAGE_SIZE, ssd_constants.IMAGE_SIZE])
mlperf.logger.log(key=mlperf.tags.INPUT_SIZE,
value=ssd_constants.IMAGE_SIZE)
cropped_classes = tf.boolean_mask(classes, box_masks, axis=0)
return resized_image, cropped_boxes, cropped_classes
def _rnn_fn(sample_arc, x, prev_s, w_prev, w_skip, input_mask, layer_mask,
params):
"""Multi-layer LSTM.
Args:
sample_arc: [num_layers * 2], sequence of tokens representing architecture.
x: [batch_size, num_steps, hidden_size].
prev_s: [batch_size, hidden_size].
w_prev: [2 * hidden_size, 2 * hidden_size].
w_skip: [None, [hidden_size, 2 * hidden_size] * (num_layers-1)].
input_mask: `[batch_size, hidden_size]`.
layer_mask: `[batch_size, hidden_size]`.
params: hyper-params object.
Returns:
next_s: [batch_size, hidden_size].
all_s: [[batch_size, num_steps, hidden_size] * num_layers].
"""
batch_size = x.get_shape()[0].value
num_steps = tf.shape(x)[1]
num_layers = len(sample_arc) // 2
all_s = tf.TensorArray(dtype=tf.float32, size=num_steps, infer_shape=False)
# extract the relevant variables, so that you only do L2-reg on them.
u_skip = []
start_idx = 0
for layer_id in range(num_layers):
prev_idx = sample_arc[start_idx]
func_idx = sample_arc[start_idx + 1]
u_skip.append(w_skip[layer_id][func_idx, prev_idx])
start_idx += 2
w_skip = u_skip
var_s = [w_prev] + w_skip[1:]
def _select_function(h, function_id):
h = tf.stack([tf.tanh(h), tf.nn.relu(h), tf.sigmoid(h), h], axis=0)
h = h[function_id]
return h
def _condition(step, *unused_args):
return tf.less(step, num_steps)
def _body(step, prev_s, all_s):
"""Body function."""
inp = x[:, step, :]
# important change: first input uses a tanh()
if layer_mask is not None:
assert input_mask is not None
ht = tf.matmul(
tf.concat([inp * input_mask, prev_s * layer_mask], axis=1),
w_prev)
else:
ht = tf.matmul(tf.concat([inp, prev_s], axis=1), w_prev)
h, t = tf.split(ht, 2, axis=1)
h = tf.tanh(h)
t = tf.sigmoid(t)
s = prev_s + t * (h - prev_s)
layers = [s]
start_idx = 0
used = []
for layer_id in range(num_layers):
prev_idx = sample_arc[start_idx]
func_idx = sample_arc[start_idx + 1]
used.append(tf.one_hot(prev_idx, depth=num_layers, dtype=tf.int32))
prev_s = tf.stack(layers, axis=0)[prev_idx]
if layer_mask is not None:
ht = tf.matmul(prev_s * layer_mask, w_skip[layer_id])
else:
ht = tf.matmul(prev_s, w_skip[layer_id])
h, t = tf.split(ht, 2, axis=1)
h = _select_function(h, func_idx)
t = tf.sigmoid(t)
s = prev_s + t * (h - prev_s)
s.set_shape([batch_size, params.hidden_size])
layers.append(s)
start_idx += 2
next_s = tf.add_n(layers[1:]) / tf.cast(num_layers, dtype=tf.float32)
all_s = all_s.write(step, next_s)
return step + 1, next_s, all_s
loop_inps = [tf.constant(0, dtype=tf.int32), prev_s, all_s]
_, next_s, all_s = tf.while_loop(_condition, _body, loop_inps)
all_s = tf.transpose(all_s.stack(), [1, 0, 2])
return next_s, all_s, var_s
def select_indices_stratified(size,
scores,
clusters,
indices=None,
soft=False,
parallel_iterations=8) -> tf.Tensor:
"""Selects indices of the instances to label given the scores.
Parameters
----------
size : int
Number of samples to label.
scores : Tensor <float32> [num_samples]
A vector of scores that are used to select which sample to label.
clusters : Tensor <int32> [num_samples]
A vector of cluster indices used for sampling stratification.
indices : Tensor <int32> [num_instances], optional
A vector of absolute indices of the samples in a larger collection.
If not None, the method returns `selected_indices` from `indices`.
Otherwise, `selected_indices` are relative.
soft : bool, optional (default=False)
Whether to select top indices softly by sampling a categorical
distribution with logits proportional to the scores.
parallel_iterations : int (default: 8)
Number of parallel iterations passed to tf.while_loop.
Returns
-------
selected_indices : Tensor <int32> [size]
"""
# size_per_cluster: <int32> [num_unique_clusters].
# unique_clusters: <int32> [num_unique_clusters].
size_per_cluster, unique_clusters = Sampler.stratify_by_cluster(
size, clusters, parallel_iterations=parallel_iterations)
def cond_fn(step, _unused_indices):
return tf.less(step, tf.size(size_per_cluster))
def body_fn(step, selected_indices):
cluster_mask = tf.equal(clusters, unique_clusters[step])
cluster_indices = tf.where(cluster_mask)[:, 0]
cluster_scores = tf.gather(scores, cluster_indices, axis=0)
selected_idx = tf.cond(
pred=tf.greater(size_per_cluster[step], 0),
true_fn=lambda: Sampler.select_indices(
size=size_per_cluster[step],
scores=cluster_scores,
indices=cluster_indices,
soft=soft,
),
false_fn=lambda: tf.constant([], dtype=tf.int32),
)
return [
tf.add(step, 1),
selected_indices.write(step, selected_idx)
]
# Select indices for each cluster cluster.
_, selected_indices_ta = tf.while_loop(
cond=cond_fn,
body=body_fn,
loop_vars=[
tf.constant(0),
tf.TensorArray(dtype=tf.int32,
infer_shape=False,
size=tf.size(unique_clusters)),
],
back_prop=False,
parallel_iterations=parallel_iterations,
name="stratified-index-selection",
)
selected_indices = selected_indices_ta.concat()
selected_indices = tf.reshape(selected_indices, shape=(size, ))
if indices is not None:
selected_indices = tf.gather(indices, selected_indices, axis=0)
return selected_indices
def hmc(energy_fn,
init_X,
L=20,
step_size=1.0,
burn_in=100,
num_samples=1000,
thinning_steps=1,
max_steps=None):
samples = tf.TensorArray(init_X.dtype,
size=num_samples * thinning_steps,
dynamic_size=False,
name='samples_ta')
#init_X = init_X[tf.newaxis,:]
X_shape = tf.shape(init_X)
if max_steps == None:
max_steps = 1000 * num_samples * thinning_steps
def hmc_step(i, num_accepted, q, samples):
# Sample momentum variables as standard Gaussians.
p = tf.random.normal(X_shape, mean=0., stddev=1.)
init_q = q
# Compute initial kinetic and potential energies.
init_K = tf.reduce_sum(tf.square(p)) / 2.
init_U = energy_fn(q)
# Do first half-step
p = p - step_size * tf.gradients(init_U, q)[0] / 2.
# Run for L steps.
for step in range(L):
q = q + step_size * p
if step != L - 1:
p = p - step_size * tf.gradients(energy_fn(q), q)[0]
proposed_U = energy_fn(q)
p = p - step_size * tf.gradients(proposed_U, q)[0] / 2.
p = -p
proposed_K = tf.reduce_sum(tf.square(p)) / 2.
p = tf.debugging.check_numerics(p, "Nans in p.")
q = tf.debugging.check_numerics(q, "Nans in q.")
accept = tf.random.uniform(
[]) < tf.exp(init_U - proposed_U + init_K - proposed_K)
accept_samples = tf.logical_and(accept, i > burn_in)
samples = tf.cond(accept_samples,
lambda: samples.write(num_accepted, q),
lambda: samples)
accept_samples = tf.squeeze(accept_samples)
q = tf.cond(accept, lambda: q, lambda: init_q)
return i + 1, num_accepted + tf.to_int32(accept_samples), q, samples
def hmc_predicate(i, num_accepted, unused_q, unused_samples):
return tf.logical_and(
tf.less(i, burn_in + max_steps),
tf.less(num_accepted, num_samples * thinning_steps))
results = tf.while_loop(hmc_predicate,
hmc_step, (0, 0, init_X, samples),
back_prop=False)
#[num_samples, data_dim]
samples = results[-1].stack()
samples = tf.reshape(samples, [num_samples, thinning_steps, -1])
samples = samples[:, -1, :]
num_steps = results[0]
num_accepted = results[1]
accept_ratio = num_accepted / (num_steps - burn_in)
tf.summary.scalar("acceptance_ratio", accept_ratio)
tf.summary.scalar("num_hmc_steps", num_steps - burn_in)
return samples
def _slow_greedy_infer(self, features, decode_length):
"""A slow greedy inference method.
Quadratic time in decode_length.
Args:
features: an map of string to `Tensor`
decode_length: an integer. How many additional timesteps to decode.
Returns:
A dict of decoding results {
"outputs": integer `Tensor` of decoded ids of shape
[batch_size, <= decode_length] if beam_size == 1 or
[batch_size, top_beams, <= decode_length]
"scores": None
"logits": `Tensor` of shape [batch_size, time, 1, 1, vocab_size].
"losses": a dictionary: {loss-name (string): floating point `Scalar`}
}
"""
if not features:
features = {}
inputs_old = None
# process all conditioning features
if "inputs" in features:
if len(features["inputs"].shape) < 4:
inputs_old = features["inputs"]
features["inputs"] = tf.expand_dims(features["inputs"], 2)
else: # this would be for melody decoding
if "melody" in features:
if len(features["melody"].shape) < 4:
inputs_old = features["melody"]
features["melody"] = tf.expand_dims(features["melody"], 2)
if "performance" in features:
if len(features["performance"].shape) < 4:
inputs_old = features["performance"]
features["performance"] = tf.expand_dims(
features["performance"], 2)
if not self.has_input:
# Prepare partial targets.
# In either features["inputs"] or features["targets"].
# We force the outputs to begin with these sequences.
partial_targets = features.get("inputs")
if partial_targets is None:
partial_targets = features["targets"]
features["partial_targets"] = tf.to_int64(partial_targets)
# Save the targets in a var and reassign it after the tf.while loop to avoid
# having targets being in a 'while' frame. This ensures targets when used
# in metric functions stays in the same frame as other vars.
targets_old = features.get("targets", None)
target_modality = self._problem_hparams.modality["targets"]
def infer_step(recent_output, recent_logits, unused_loss):
"""Inference step."""
if not tf.executing_eagerly():
if self._target_modality_is_real:
dim = self._problem_hparams.vocab_size["targets"]
if dim is not None and hasattr(self._hparams,
"vocab_divisor"):
dim += (-dim) % self._hparams.vocab_divisor
recent_output.set_shape([None, None, None, dim])
else:
recent_output.set_shape([None, None, None, 1])
padded = tf.pad(recent_output, [[0, 0], [0, 1], [0, 0], [0, 0]])
features["targets"] = padded
# This is inefficient in that it generates samples at all timesteps,
# not just the last one, except if target_modality is pointwise.
samples, logits, losses = self.sample(features)
# Concatenate the already-generated recent_output with last timestep
# of the newly-generated samples.
top = self._hparams.top.get("targets",
modalities.get_top(target_modality))
if getattr(top, "pointwise", False):
cur_sample = samples[:, -1, :, :]
else:
cur_sample = samples[:,
common_layers.shape_list(recent_output
)[1], :, :]
if self._target_modality_is_real:
cur_sample = tf.expand_dims(cur_sample, axis=1)
samples = tf.concat([recent_output, cur_sample], axis=1)
else:
cur_sample = tf.to_int64(tf.expand_dims(cur_sample, axis=1))
samples = tf.concat([recent_output, cur_sample], axis=1)
if not tf.executing_eagerly():
samples.set_shape([None, None, None, 1])
# Assuming we have one shard for logits.
logits = tf.concat([recent_logits, logits[:, -1:]], 1)
loss = sum([l for l in losses.values() if l is not None])
return samples, logits, loss
# Create an initial output tensor. This will be passed
# to the infer_step, which adds one timestep at every iteration.
if "partial_targets" in features:
initial_output = tf.to_int64(features["partial_targets"])
while len(initial_output.get_shape().as_list()) < 4:
initial_output = tf.expand_dims(initial_output, 2)
batch_size = common_layers.shape_list(initial_output)[0]
else:
batch_size = common_layers.shape_list(features["performance"])[0]
if self._target_modality_is_real:
dim = self._problem_hparams.vocab_size["targets"]
if dim is not None and hasattr(self._hparams, "vocab_divisor"):
dim += (-dim) % self._hparams.vocab_divisor
initial_output = tf.zeros((batch_size, 0, 1, dim),
dtype=tf.float32)
else:
initial_output = tf.zeros((batch_size, 0, 1, 1),
dtype=tf.int64)
# Hack: foldl complains when the output shape is less specified than the
# input shape, so we confuse it about the input shape.
initial_output = tf.slice(initial_output, [0, 0, 0, 0],
common_layers.shape_list(initial_output))
target_modality = self._problem_hparams.modality["targets"]
if target_modality == modalities.ModalityType.CLASS_LABEL:
decode_length = 1
else:
if "partial_targets" in features:
prefix_length = common_layers.shape_list(
features["partial_targets"])[1]
else:
# this code will generate outputs that tend to be long,
# but this is to avoid the case when the melody is extremely short.
# this can be changed to features["melody"] for the actual behavior.
prefix_length = common_layers.shape_list(
features["performance"])[1]
decode_length = prefix_length + decode_length
# Initial values of result, logits and loss.
result = initial_output
vocab_size = self._problem_hparams.vocab_size["targets"]
if vocab_size is not None and hasattr(self._hparams, "vocab_divisor"):
vocab_size += (-vocab_size) % self._hparams.vocab_divisor
if self._target_modality_is_real:
logits = tf.zeros((batch_size, 0, 1, vocab_size))
logits_shape_inv = [None, None, None, None]
else:
# tensor of shape [batch_size, time, 1, 1, vocab_size]
logits = tf.zeros((batch_size, 0, 1, 1, vocab_size))
logits_shape_inv = [None, None, None, None, None]
if not tf.executing_eagerly():
logits.set_shape(logits_shape_inv)
loss = 0.0
def while_exit_cond(result, logits, loss): # pylint: disable=unused-argument
"""Exit the loop either if reach decode_length or EOS."""
length = common_layers.shape_list(result)[1]
not_overflow = length < decode_length
if self._problem_hparams.stop_at_eos:
def fn_not_eos():
return tf.not_equal( # Check if the last predicted element is a EOS
tf.squeeze(result[:, -1, :, :]), text_encoder.EOS_ID)
not_eos = tf.cond(
# We only check for early stopping if there is at least 1 element (
# otherwise not_eos will crash).
tf.not_equal(length, 0),
fn_not_eos,
lambda: True,
)
return tf.cond(
tf.equal(batch_size, 1),
# If batch_size == 1, we check EOS for early stopping.
lambda: tf.logical_and(not_overflow, not_eos),
# Else, just wait for max length
lambda: not_overflow)
return not_overflow
result, logits, loss = tf.while_loop(
while_exit_cond,
infer_step, [result, logits, loss],
shape_invariants=[
tf.TensorShape([None, None, None, None]),
tf.TensorShape(logits_shape_inv),
tf.TensorShape([]),
],
back_prop=False,
parallel_iterations=1)
if inputs_old is not None: # Restore to not confuse Estimator.
features["inputs"] = inputs_old
# Reassign targets back to the previous value.
if targets_old is not None:
features["targets"] = targets_old
losses = {"training": loss}
if "partial_targets" in features:
partial_target_length = common_layers.shape_list(
features["partial_targets"])[1]
result = tf.slice(result, [0, partial_target_length, 0, 0],
[-1, -1, -1, -1])
return {
"outputs": result,
"scores": None,
"logits": logits,
"losses": losses,
}
def build_sample_graph(self,
input_pianorolls=None,
outer_masks=None,
total_gibbs_steps=None):
"""Builds the tf.while_loop based sampling graph.
Args:
input_pianorolls: Optional input pianorolls override. If None, uses the
pianorolls placeholder.
outer_masks: Optional input outer_masks override. If None, uses the
outer_masks placeholder.
total_gibbs_steps: Optional input total_gibbs_steps override. If None,
uses the total_gibbs_steps placeholder.
Returns:
The output op of the graph.
"""
if input_pianorolls is None:
input_pianorolls = self.inputs["pianorolls"]
if outer_masks is None:
outer_masks = self.inputs["outer_masks"]
tt = tf.shape(input_pianorolls)[1]
sample_steps = tf.to_float(self.inputs["sample_steps"])
if total_gibbs_steps is None:
total_gibbs_steps = self.inputs["total_gibbs_steps"]
temperature = self.inputs["temperature"]
input_pianorolls = tf.to_float(input_pianorolls)
outer_masks = self.make_outer_masks(outer_masks, input_pianorolls)
# Calculate total_gibbs_steps as steps * num_instruments if not given.
total_gibbs_steps = tf.cond(
tf.equal(total_gibbs_steps, 0),
lambda: tf.to_float(tt * self.hparams.num_instruments),
lambda: tf.to_float(total_gibbs_steps))
# sample_steps is set to total_gibbs_steps if not given.
sample_steps = tf.cond(tf.equal(sample_steps,
0), lambda: total_gibbs_steps,
lambda: tf.to_float(sample_steps))
def infer_step(pianorolls, step_count):
"""Called by tf.while_loop, takes a Gibbs step."""
mask_prob = compute_mask_prob_from_yao_schedule(
step_count, total_gibbs_steps)
# 1 indicates mask out, 0 is not mask.
masks = make_bernoulli_masks(tf.shape(pianorolls), mask_prob,
outer_masks)
logits = self.predict(pianorolls, masks)
samples = sample_with_temperature(logits, temperature=temperature)
outputs = pianorolls * (1 - masks) + samples * masks
check_completion_op = tf.assert_equal(
tf.where(tf.equal(tf.reduce_max(masks, axis=2), 1.),
tf.reduce_max(outputs, axis=2),
tf.reduce_max(pianorolls, axis=2)), 1.)
with tf.control_dependencies([check_completion_op]):
outputs = tf.identity(outputs)
step_count += 1
return outputs, step_count
current_step = tf.to_float(self.inputs["current_step"])
# Initializes pianorolls by evaluating the model once to fill in all gaps.
logits = self.predict(tf.to_float(input_pianorolls), outer_masks)
samples = sample_with_temperature(logits, temperature=temperature)
tf.get_variable_scope().reuse_variables()
self.samples, current_step = tf.while_loop(
lambda samples, current_step: current_step < sample_steps,
infer_step, [samples, current_step],
shape_invariants=[
tf.TensorShape([None, None, None, None]),
tf.TensorShape(None),
],
back_prop=False,
parallel_iterations=1,
name="coco_while")
self.samples.set_shape(input_pianorolls.shape)
return self.samples
def infer(self, features, **kwargs):
decode_length = (self.frame_height * self.frame_width *
self.num_channels)
cache = {}
decoding_stats = {}
targets_old = features.get("targets", None)
initial_output = tf.zeros((self.batch_size, decode_length),
dtype=tf.int32)
initial_logits = tf.zeros(
(self.batch_size, decode_length, self.targets_vocab_size))
# call body once to initialize cache with representations of input frames.
features["targets"] = initial_output
with tf.variable_scope("sparse_imagetransformer/body",
reuse=tf.AUTO_REUSE,
use_resource=True):
self.body(features,
decode_step=None,
cache=cache,
decoding_stats=decoding_stats)
def infer_step(i, recent_output, recent_logits, cache, decoding_stats):
"""Inference step."""
features_copy = features.copy()
features_copy["targets"] = recent_output
cur_sample, cur_logit = self.sample(features_copy,
decode_step=i,
cache=cache,
decoding_stats=decoding_stats)
pos = i
samples = recent_output + tf.scatter_nd(
indices=[[b, pos] for b in range(self.batch_size)],
updates=cur_sample,
shape=utils.shape_list(recent_output))
logits = recent_logits + tf.scatter_nd(
indices=[[b, pos] for b in range(self.batch_size)],
updates=cur_logit,
shape=utils.shape_list(recent_logits))
return i + 1, samples, logits, cache, decoding_stats
def while_exit_cond(i, result, logits, cache, decoding_stats): # pylint: disable=unused-argument
"""Exit the loop if it reaches decode_length."""
not_overflow = i < decode_length
return not_overflow
_, final_result, final_logits, _, decoding_stats = tf.while_loop(
while_exit_cond,
infer_step, [
tf.constant(0), initial_output, initial_logits, cache,
decoding_stats
],
back_prop=False,
parallel_iterations=1)
original_shape = self.get_shape_for_decoder()
blocks_per_dim = [
s // q for s, q in zip(original_shape, self.hparams.query_shape)
]
final_result_shape = utils.shape_list(final_result)
final_result = tf.reshape(
final_result,
[final_result_shape[0], -1,
np.prod(self.hparams.query_shape), 1])
final_logits_shape = utils.shape_list(final_logits)
final_logits = tf.reshape(final_logits, [
final_logits_shape[0], -1,
np.prod(self.hparams.query_shape), final_logits_shape[-1]
])
final_result = utils.unflatten_blocks_nd(final_result, blocks_per_dim)
final_result = utils.put_back_blocks_nd(final_result,
self.hparams.query_shape)
final_logits = utils.unflatten_blocks_nd(final_logits, blocks_per_dim)
final_logits = utils.put_back_blocks_nd(final_logits,
self.hparams.query_shape)
final_result = tf.reshape(
final_result,
[-1, self.frame_height, self.frame_width, self.num_channels])
final_logits = tf.reshape(final_logits, [
-1, self.frame_height, self.frame_width, self.num_channels,
self.targets_vocab_size
])
if utils.is_xla_compiled():
_IMGS["decodes"] = final_result
for name, value in decoding_stats.items():
tf.summary.scalar("decodes/%s" % name, value / decode_length)
# Reassign targets back to the previous value.
if targets_old is not None:
features["targets"] = targets_old
return {
"outputs": final_result,
"scores": None,
"logits": final_logits,
"losses": None,
}
def dynamic_decode(decoder,
impute_finished=False,
maximum_iterations=None,
parallel_iterations=32,
swap_memory=False,
scope=None):
"""Perform dynamic decoding with `decoder`.
Calls initialize() once and step() repeatedly on the Decoder object.
Args:
decoder: A `Decoder` instance.
impute_finished: Python boolean. If `True`, then states for batch
entries which are marked as finished get copied through and the
corresponding outputs get zeroed out. This causes some slowdown at
each time step, but ensures that the final state and outputs have
the correct values and that backprop ignores time steps that were
marked as finished.
maximum_iterations: `int32` scalar, maximum allowed number of decoding
steps. Default is `None` (decode until the decoder is fully done).
parallel_iterations: Argument passed to `tf.while_loop`.
swap_memory: Argument passed to `tf.while_loop`.
scope: Optional variable scope to use.
Returns:
`(final_outputs, final_state, final_sequence_lengths)`.
Raises:
TypeError: if `decoder` is not an instance of `Decoder`.
ValueError: if `maximum_iterations` is provided but is not a scalar.
"""
if not isinstance(decoder, Decoder):
raise TypeError("Expected decoder to be type Decoder, but saw: %s" %
type(decoder))
with tf.variable_scope(scope, "decoder") as varscope:
# Determine context types.
ctxt = tf.get_default_graph()._get_control_flow_context() # pylint: disable=protected-access
is_xla = control_flow_util.GetContainingXLAContext(ctxt) is not None
in_while_loop = (control_flow_util.GetContainingWhileContext(ctxt)
is not None)
# Properly cache variable values inside the while_loop.
# Don't set a caching device when running in a loop, since it is possible
# that train steps could be wrapped in a tf.while_loop. In that scenario
# caching prevents forward computations in loop iterations from re-reading
# the updated weights.
if not tf.executing_eagerly() and not in_while_loop:
if varscope.caching_device is None:
varscope.set_caching_device(lambda op: op.device)
if maximum_iterations is not None:
maximum_iterations = tf.convert_to_tensor(
maximum_iterations, dtype=tf.int32, name="maximum_iterations")
if maximum_iterations.get_shape().ndims != 0:
raise ValueError("maximum_iterations must be a scalar")
initial_finished, initial_inputs, initial_state = decoder.initialize()
zero_outputs = _create_zero_outputs(decoder.output_size,
decoder.output_dtype,
decoder.batch_size)
if is_xla and maximum_iterations is None:
raise ValueError(
"maximum_iterations is required for XLA compilation.")
if maximum_iterations is not None:
initial_finished = tf.logical_or(initial_finished,
0 >= maximum_iterations)
initial_sequence_lengths = tf.zeros_like(initial_finished,
dtype=tf.int32)
initial_time = tf.constant(0, dtype=tf.int32)
def _create_ta(s, d):
return tf.zeros([maximum_iterations, decoder.batch_size, s],
dtype=d)
initial_outputs_ta = contrib_framework.nest.map_structure(
_create_ta, decoder.output_size, decoder.output_dtype)
def condition(unused_time, unused_outputs_ta, unused_state,
unused_inputs, finished, unused_sequence_lengths):
return True
def body(time, outputs_ta, state, inputs, finished, sequence_lengths):
"""Internal while_loop body.
Args:
time: scalar int32 tensor.
outputs_ta: structure of TensorArray.
state: (structure of) state tensors and TensorArrays.
inputs: (structure of) input tensors.
finished: bool tensor (keeping track of what's finished).
sequence_lengths: int32 tensor (keeping track of time of finish).
Returns:
`(time + 1, outputs_ta, next_state, next_inputs, next_finished,
next_sequence_lengths)`.
```
"""
(next_outputs, decoder_state, next_inputs,
decoder_finished) = decoder.step(time, inputs, state)
if decoder.tracks_own_finished:
next_finished = decoder_finished
else:
next_finished = tf.logical_or(decoder_finished, finished)
next_sequence_lengths = tf.where(
tf.logical_not(finished),
tf.fill(tf.shape(sequence_lengths), time + 1),
sequence_lengths)
contrib_framework.nest.assert_same_structure(state, decoder_state)
contrib_framework.nest.assert_same_structure(
outputs_ta, next_outputs)
contrib_framework.nest.assert_same_structure(inputs, next_inputs)
# Zero out output values past finish
if impute_finished:
emit = contrib_framework.nest.map_structure(
lambda out, zero: tf.where(finished, zero, out),
next_outputs, zero_outputs)
else:
emit = next_outputs
# Copy through states past finish
def _maybe_copy_state(new, cur):
# TensorArrays and scalar states get passed through.
if isinstance(cur, tf.TensorArray):
pass_through = True
else:
new.set_shape(cur.shape)
pass_through = (new.shape.ndims == 0)
return new if pass_through else tf.where(finished, cur, new)
if impute_finished:
next_state = contrib_framework.nest.map_structure(
_maybe_copy_state, decoder_state, state)
else:
next_state = decoder_state
outputs_ta = contrib_framework.nest.map_structure(
lambda ta, out: inplace_ops.alias_inplace_update(
ta, time, out), outputs_ta, emit)
return (time + 1, outputs_ta, next_state, next_inputs,
next_finished, next_sequence_lengths)
res = tf.while_loop(condition,
body,
loop_vars=(
initial_time,
initial_outputs_ta,
initial_state,
initial_inputs,
initial_finished,
initial_sequence_lengths,
),
parallel_iterations=parallel_iterations,
maximum_iterations=maximum_iterations,
swap_memory=swap_memory)
final_outputs_ta = res[1]
final_state = res[2]
final_sequence_lengths = res[5]
final_outputs = final_outputs_ta
try:
final_outputs, final_state = decoder.finalize(
final_outputs, final_state, final_sequence_lengths)
except NotImplementedError:
pass
pred_ids = tf.transpose(final_state.pred_ids, [2, 0, 1])
return pred_ids
def beam_search(symbols_to_logits_fn,
initial_ids,
beam_size,
decode_length,
vocab_size,
alpha,
states=None,
eos_id=EOS_ID,
stop_early=True,
use_tpu=False,
use_top_k_with_unique=True):
"""Beam search with length penalties.
Requires a function that can take the currently decoded symbols and return
the logits for the next symbol. The implementation is inspired by
https://arxiv.org/abs/1609.08144.
When running, the beam search steps can be visualized by using tfdbg to watch
the operations generating the output ids for each beam step. These operations
have the pattern:
(alive|finished)_topk_(seq,scores)
Operations marked `alive` represent the new beam sequences that will be
processed in the next step. Operations marked `finished` represent the
completed beam sequences, which may be padded with 0s if no beams finished.
Operations marked `seq` store the full beam sequence for the time step.
Operations marked `scores` store the sequence's final log scores.
The beam search steps will be processed sequentially in order, so when
capturing observed from these operations, tensors, clients can make
assumptions about which step is being recorded.
WARNING: Assumes 2nd dimension of tensors in `states` and not invariant, this
means that the shape of the 2nd dimension of these tensors will not be
available (i.e. set to None) inside symbols_to_logits_fn.
Args:
symbols_to_logits_fn: Interface to the model, to provide logits.
Shoud take [batch_size, decoded_ids] and return [batch_size, vocab_size]
initial_ids: Ids to start off the decoding, this will be the first thing
handed to symbols_to_logits_fn (after expanding to beam size)
[batch_size]
beam_size: Size of the beam.
decode_length: Number of steps to decode for.
vocab_size: Size of the vocab, must equal the size of the logits returned by
symbols_to_logits_fn
alpha: alpha for length penalty.
states: dict (possibly nested) of decoding states.
eos_id: ID for end of sentence.
stop_early: a boolean - stop once best sequence is provably determined.
use_tpu: A bool, whether to do beam search on TPU.
use_top_k_with_unique: bool, whether to use a fast (but decreased precision)
top_k during TPU beam search.
Returns:
Tuple of
(decoded beams [batch_size, beam_size, decode_length]
decoding probabilities [batch_size, beam_size])
"""
batch_size = common_layers.shape_list(initial_ids)[0]
# Assume initial_ids are prob 1.0
initial_log_probs = tf.constant([[0.] + [-INF] * (beam_size - 1)])
# Expand to beam_size (batch_size, beam_size)
alive_log_probs = tf.tile(initial_log_probs, [batch_size, 1])
# Expand each batch and state to beam_size
alive_seq = _expand_to_beam_size(initial_ids, beam_size)
alive_seq = tf.expand_dims(alive_seq, axis=2) # (batch_size, beam_size, 1)
if use_tpu:
alive_seq = tf.tile(alive_seq, [1, 1, decode_length + 1])
if states:
states = nest.map_structure(
lambda state: _expand_to_beam_size(state, beam_size), states)
else:
states = {}
# Finished will keep track of all the sequences that have finished so far
# Finished log probs will be negative infinity in the beginning
# finished_flags will keep track of booleans
finished_seq = tf.zeros(common_layers.shape_list(alive_seq), tf.int32)
# Setting the scores of the initial to negative infinity.
finished_scores = tf.ones([batch_size, beam_size]) * -INF
finished_flags = tf.zeros([batch_size, beam_size], tf.bool)
def grow_finished(finished_seq, finished_scores, finished_flags, curr_seq,
curr_scores, curr_finished):
"""Given sequences and scores, will gather the top k=beam size sequences.
Args:
finished_seq: Current finished sequences.
[batch_size, beam_size, current_decoded_length]
finished_scores: scores for each of these sequences.
[batch_size, beam_size]
finished_flags: finished bools for each of these sequences.
[batch_size, beam_size]
curr_seq: current topk sequence that has been grown by one position.
[batch_size, beam_size, current_decoded_length]
curr_scores: scores for each of these sequences. [batch_size, beam_size]
curr_finished: Finished flags for each of these sequences.
[batch_size, beam_size]
Returns:
Tuple of
(Topk sequences based on scores,
log probs of these sequences,
Finished flags of these sequences)
"""
if not use_tpu:
# First append a column of 0'ids to finished to make the same length with
# finished scores
finished_seq = tf.concat(
[finished_seq,
tf.zeros([batch_size, beam_size, 1], tf.int32)], axis=2)
# Set the scores of the unfinished seq in curr_seq to large negative
# values
curr_scores += (1. - tf.to_float(curr_finished)) * -INF
# concatenating the sequences and scores along beam axis
curr_finished_seq = tf.concat([finished_seq, curr_seq], axis=1)
curr_finished_scores = tf.concat([finished_scores, curr_scores], axis=1)
curr_finished_flags = tf.concat([finished_flags, curr_finished], axis=1)
return compute_topk_scores_and_seq(
curr_finished_seq,
curr_finished_scores,
curr_finished_scores,
curr_finished_flags,
beam_size,
batch_size,
"grow_finished",
use_tpu=use_tpu,
use_top_k_with_unique=use_top_k_with_unique)
def grow_alive(curr_seq, curr_scores, curr_log_probs, curr_finished, states):
"""Given sequences and scores, will gather the top k=beam size sequences.
Args:
curr_seq: current topk sequence that has been grown by one position.
[batch_size, beam_size, i+1]
curr_scores: scores for each of these sequences. [batch_size, beam_size]
curr_log_probs: log probs for each of these sequences.
[batch_size, beam_size]
curr_finished: Finished flags for each of these sequences.
[batch_size, beam_size]
states: dict (possibly nested) of decoding states.
Returns:
Tuple of
(Topk sequences based on scores,
log probs of these sequences,
Finished flags of these sequences)
"""
# Set the scores of the finished seq in curr_seq to large negative
# values
curr_scores += tf.to_float(curr_finished) * -INF
return compute_topk_scores_and_seq(curr_seq, curr_scores, curr_log_probs,
curr_finished, beam_size, batch_size,
"grow_alive", states, use_tpu=use_tpu)
def grow_topk(i, alive_seq, alive_log_probs, states):
r"""Inner beam search loop.
This function takes the current alive sequences, and grows them to topk
sequences where k = 2*beam. We use 2*beam because, we could have beam_size
number of sequences that might hit <EOS> and there will be no alive
sequences to continue. With 2*beam_size, this will not happen. This relies
on the assumption the vocab size is > beam size. If this is true, we'll
have at least beam_size non <EOS> extensions if we extract the next top
2*beam words.
Length penalty is given by = (5+len(decode)/6) ^ -\alpha. Pls refer to
https://arxiv.org/abs/1609.08144.
Args:
i: loop index
alive_seq: Topk sequences decoded so far [batch_size, beam_size, i+1]
alive_log_probs: probabilities of these sequences. [batch_size, beam_size]
states: dict (possibly nested) of decoding states.
Returns:
Tuple of
(Topk sequences extended by the next word,
The log probs of these sequences,
The scores with length penalty of these sequences,
Flags indicating which of these sequences have finished decoding,
dict of transformed decoding states)
"""
# Get the logits for all the possible next symbols
if use_tpu and states:
flat_ids = tf.reshape(
tf.slice(alive_seq, [0, 0, i], [batch_size, beam_size, 1]),
[batch_size * beam_size, -1])
else:
flat_ids = tf.reshape(alive_seq, [batch_size * beam_size, -1])
# (batch_size * beam_size, decoded_length)
if states:
flat_states = nest.map_structure(_merge_beam_dim, states)
flat_logits, flat_states = symbols_to_logits_fn(flat_ids, i, flat_states)
states = nest.map_structure(
lambda t: _unmerge_beam_dim(t, batch_size, beam_size), flat_states)
elif use_tpu:
flat_logits = symbols_to_logits_fn(flat_ids, i)
else:
flat_logits = symbols_to_logits_fn(flat_ids)
logits = tf.reshape(flat_logits, [batch_size, beam_size, -1])
# Convert logits to normalized log probs
candidate_log_probs = common_layers.log_prob_from_logits(logits)
# Multiply the probabilities by the current probabilities of the beam.
# (batch_size, beam_size, vocab_size) + (batch_size, beam_size, 1)
log_probs = candidate_log_probs + tf.expand_dims(alive_log_probs, axis=2)
length_penalty = tf.pow(((5. + tf.to_float(i + 1)) / 6.), alpha)
curr_scores = log_probs / length_penalty
# Flatten out (beam_size, vocab_size) probs in to a list of possibilities
flat_curr_scores = tf.reshape(curr_scores, [-1, beam_size * vocab_size])
if use_tpu and use_top_k_with_unique:
topk_scores, topk_ids = top_k_with_unique(
flat_curr_scores, k=beam_size * 2)
else:
topk_scores, topk_ids = tf.nn.top_k(flat_curr_scores, k=beam_size * 2)
# Recovering the log probs because we will need to send them back
topk_log_probs = topk_scores * length_penalty
# Work out what beam the top probs are in.
topk_beam_index = topk_ids // vocab_size
topk_ids %= vocab_size # Unflatten the ids
if not use_tpu:
# The next three steps are to create coordinates for tf.gather_nd to pull
# out the correct sequences from id's that we need to grow.
# We will also use the coordinates to gather the booleans of the beam
# items that survived.
batch_pos = compute_batch_indices(batch_size, beam_size * 2)
# top beams will give us the actual coordinates to do the gather.
# stacking will create a tensor of dimension batch * beam * 2, where the
# last dimension contains the i,j gathering coordinates.
topk_coordinates = tf.stack([batch_pos, topk_beam_index], axis=2)
# Gather up the most probable 2*beams both for the ids and
# finished_in_alive bools
topk_seq = tf.gather_nd(alive_seq, topk_coordinates)
if states:
states = nest.map_structure(
lambda state: tf.gather_nd(state, topk_coordinates), states)
# Append the most probable alive
topk_seq = tf.concat([topk_seq, tf.expand_dims(topk_ids, axis=2)], axis=2)
else:
# Gather up the most probable 2*beams both for the ids and
# finished_in_alive bools
topk_seq = fast_tpu_gather(alive_seq, topk_beam_index)
if states:
states = nest.map_structure(
lambda state: fast_tpu_gather(state, topk_beam_index), states)
# Update the most probable alive
topk_seq = tf.transpose(topk_seq, perm=[2, 0, 1])
topk_seq = inplace_ops.alias_inplace_update(topk_seq, i + 1, topk_ids)
topk_seq = tf.transpose(topk_seq, perm=[1, 2, 0])
topk_finished = tf.equal(topk_ids, eos_id)
return topk_seq, topk_log_probs, topk_scores, topk_finished, states
def inner_loop(i, alive_seq, alive_log_probs, finished_seq, finished_scores,
finished_flags, states):
"""Inner beam search loop.
There are three groups of tensors, alive, finished, and topk.
The alive group contains information about the current alive sequences
The topk group contains information about alive + topk current decoded words
the finished group contains information about finished sentences, that is,
the ones that have decoded to <EOS>. These are what we return.
The general beam search algorithm is as follows:
While we haven't terminated (pls look at termination condition)
1. Grow the current alive to get beam*2 topk sequences
2. Among the topk, keep the top beam_size ones that haven't reached EOS
into alive
3. Among the topk, keep the top beam_size ones have reached EOS into
finished
Repeat
To make things simple with using fixed size tensors, we will end
up inserting unfinished sequences into finished in the beginning. To stop
that we add -ve INF to the score of the unfinished sequence so that when a
true finished sequence does appear, it will have a higher score than all the
unfinished ones.
Args:
i: loop index
alive_seq: Topk sequences decoded so far [batch_size, beam_size, i+1]
alive_log_probs: probabilities of the beams. [batch_size, beam_size]
finished_seq: Current finished sequences.
[batch_size, beam_size, i+1]
finished_scores: scores for each of these sequences.
[batch_size, beam_size]
finished_flags: finished bools for each of these sequences.
[batch_size, beam_size]
states: dict (possibly nested) of decoding states.
Returns:
Tuple of
(Incremented loop index
New alive sequences,
Log probs of the alive sequences,
New finished sequences,
Scores of the new finished sequences,
Flags indicating which sequence in finished as reached EOS,
dict of final decoding states)
"""
# Each inner loop, we carry out three steps:
# 1. Get the current topk items.
# 2. Extract the ones that have finished and haven't finished
# 3. Recompute the contents of finished based on scores.
topk_seq, topk_log_probs, topk_scores, topk_finished, states = grow_topk(
i, alive_seq, alive_log_probs, states)
alive_seq, alive_log_probs, _, states = grow_alive(
topk_seq, topk_scores, topk_log_probs, topk_finished, states)
finished_seq, finished_scores, finished_flags, _ = grow_finished(
finished_seq, finished_scores, finished_flags, topk_seq, topk_scores,
topk_finished)
return (i + 1, alive_seq, alive_log_probs, finished_seq, finished_scores,
finished_flags, states)
def _is_not_finished(i, unused_alive_seq, alive_log_probs,
unused_finished_seq, finished_scores,
unused_finished_in_finished, unused_states):
"""Checking termination condition.
We terminate when we decoded up to decode_length or the lowest scoring item
in finished has a greater score that the highest prob item in alive divided
by the max length penalty
Args:
i: loop index
alive_log_probs: probabilities of the beams. [batch_size, beam_size]
finished_scores: scores for each of these sequences.
[batch_size, beam_size]
Returns:
Bool.
"""
max_length_penalty = tf.pow(((5. + tf.to_float(decode_length)) / 6.), alpha)
# The best possible score of the most likely alive sequence.
lower_bound_alive_scores = alive_log_probs[:, 0] / max_length_penalty
if not stop_early:
# by considering the min score (in the top N beams) we ensure that
# the decoder will keep decoding until there is at least one beam
# (in the top N) that can be improved (w.r.t. the alive beams).
# any unfinished beam will have score -INF - thus the min
# will always be -INF if there is at least one unfinished beam -
# which means the bound_is_met condition cannot be true in this case.
lowest_score_of_finished_in_finished = tf.reduce_min(finished_scores)
else:
# by taking the max score we only care about the first beam;
# as soon as this first beam cannot be beaten from the alive beams
# the beam decoder can stop.
# similarly to the above, if the top beam is not completed, its
# finished_score is -INF, thus it will not activate the
# bound_is_met condition. (i.e., decoder will keep going on).
# note we need to find the max for every sequence eparately - so, we need
# to keep the batch dimension (see axis=1)
lowest_score_of_finished_in_finished = tf.reduce_max(finished_scores,
axis=1)
bound_is_met = tf.reduce_all(
tf.greater(lowest_score_of_finished_in_finished,
lower_bound_alive_scores))
return tf.logical_and(
tf.less(i, decode_length), tf.logical_not(bound_is_met))
inner_shape = tf.TensorShape([None, None, None])
if use_tpu:
inner_shape = tf.TensorShape([batch_size, beam_size, decode_length + 1])
if use_tpu:
state_struc = nest.map_structure(lambda state: state.get_shape(), states)
else:
state_struc = nest.map_structure(get_state_shape_invariants, states)
(_, alive_seq, alive_log_probs, finished_seq, finished_scores,
finished_flags, states) = tf.while_loop(
_is_not_finished,
inner_loop, [
tf.constant(0), alive_seq, alive_log_probs, finished_seq,
finished_scores, finished_flags, states
],
shape_invariants=[
tf.TensorShape([]),
inner_shape,
alive_log_probs.get_shape(),
inner_shape,
finished_scores.get_shape(),
finished_flags.get_shape(),
state_struc
],
parallel_iterations=1,
back_prop=False)
alive_seq.set_shape((None, beam_size, None))
finished_seq.set_shape((None, beam_size, None))
# Accounting for corner case: It's possible that no sequence in alive for a
# particular batch item ever reached EOS. In that case, we should just copy
# the contents of alive for that batch item. tf.reduce_any(finished_flags, 1)
# if 0, means that no sequence for that batch index had reached EOS. We need
# to do the same for the scores as well.
finished_seq = tf.where(
tf.reduce_any(finished_flags, 1), finished_seq, alive_seq)
finished_scores = tf.where(
tf.reduce_any(finished_flags, 1), finished_scores, alive_log_probs)
return finished_seq, finished_scores, states
def setup(act_fun):
channel_num = 3
if FLAGS.mnist_model:
print("------------------Using MNIST model------------")
model = MnistNet(
num_channels=channel_num,
num_filters=128,
act_fun=act_fun)
elif FLAGS.large_model:
print("------------------Using ResNet32Large model------------")
model = ResNet32Large(
num_channels=channel_num,
num_filters=128,
train=True,
act_fun=act_fun)
elif FLAGS.larger_model:
print("------------------Using ResNet32Larger model------------")
model = ResNet32Larger(
num_channels=channel_num,
num_filters=128,
act_fun=act_fun)
elif FLAGS.wider_model:
print("------------------Using ResNet32Wider model------------")
model = ResNet32Wider(
num_channels=channel_num,
num_filters=192,
act_fun=act_fun)
else:
print("------------------Using ResNet32 model------------")
model = ResNet32(
num_channels=channel_num,
num_filters=128,
act_fun=act_fun)
batch_size = FLAGS.batch_size
weights = [model.construct_weights('context_0')]
Y = tf.placeholder(shape=(None), dtype=tf.int32)
LABEL = None
X_NOISE = tf.placeholder(shape=(None, 32, 32, 3), dtype=tf.float32)
X = tf.placeholder(shape=(None, 32, 32, 3), dtype=tf.float32)
LABEL = tf.placeholder(shape=(None, 10), dtype=tf.float32)
LABEL_POS = tf.placeholder(shape=(None, 10), dtype=tf.float32)
# Varibles to run in training
X_SPLIT = tf.split(X, FLAGS.num_gpus)
X_NOISE_SPLIT = tf.split(X_NOISE, FLAGS.num_gpus)
LABEL_SPLIT = tf.split(LABEL, FLAGS.num_gpus)
LABEL_POS_SPLIT = tf.split(LABEL_POS, FLAGS.num_gpus)
LABEL_SPLIT_INIT = list(LABEL_SPLIT)
tower_grads = []
tower_gen_grads = []
x_mod_list = []
optimizer = AdamOptimizer(FLAGS.lr, beta1=0.0, beta2=0.999)
optimizer = hvd.DistributedOptimizer(optimizer)
for j in range(FLAGS.num_gpus):
if FLAGS.model_cclass:
ind_batch_size = FLAGS.batch_size // FLAGS.num_gpus
label_tensor = tf.Variable(
tf.convert_to_tensor(
np.reshape(
np.tile(np.eye(10), (FLAGS.batch_size, 1, 1)),
(FLAGS.batch_size * 10, 10)),
dtype=tf.float32),
trainable=False,
dtype=tf.float32)
x_split = tf.tile(
tf.reshape(
X_SPLIT[j], (ind_batch_size, 1, 32, 32, 3)), (1, 10, 1, 1, 1))
x_split = tf.reshape(x_split, (ind_batch_size * 10, 32, 32, 3))
energy_pos = model.forward(
x_split,
weights[0],
label=label_tensor,
stop_at_grad=False)
energy_pos_full = tf.reshape(energy_pos, (ind_batch_size, 10))
energy_partition_est = tf.reduce_logsumexp(
energy_pos_full, axis=1, keepdims=True)
uniform = tf.random_uniform(tf.shape(energy_pos_full))
label_tensor = tf.argmax(-energy_pos_full -
tf.log(-tf.log(uniform)) - energy_partition_est, axis=1)
label = tf.one_hot(label_tensor, 10, dtype=tf.float32)
label = tf.Print(label, [label_tensor, energy_pos_full])
LABEL_SPLIT[j] = label
energy_pos = tf.concat(energy_pos, axis=0)
else:
energy_pos = [
model.forward(
X_SPLIT[j],
weights[0],
label=LABEL_POS_SPLIT[j],
stop_at_grad=False)]
energy_pos = tf.concat(energy_pos, axis=0)
print("Building graph...")
x_mod = x_orig = X_NOISE_SPLIT[j]
x_grads = []
energy_negs = []
loss_energys = []
energy_negs.extend([model.forward(tf.stop_gradient(
x_mod), weights[0], label=LABEL_SPLIT[j], stop_at_grad=False, reuse=True)])
eps_begin = tf.zeros(1)
steps = tf.constant(0)
c = lambda i, x: tf.less(i, FLAGS.num_steps)
def langevin_step(counter, x_mod):
x_mod = x_mod + tf.random_normal(tf.shape(x_mod),
mean=0.0,
stddev=0.005 * FLAGS.rescale * FLAGS.noise_scale)
energy_noise = energy_start = tf.concat(
[model.forward(
x_mod,
weights[0],
label=LABEL_SPLIT[j],
reuse=True,
stop_at_grad=False,
stop_batch=True)],
axis=0)
x_grad, label_grad = tf.gradients(
FLAGS.temperature * energy_noise, [x_mod, LABEL_SPLIT[j]])
energy_noise_old = energy_noise
lr = FLAGS.step_lr
if FLAGS.proj_norm != 0.0:
if FLAGS.proj_norm_type == 'l2':
x_grad = tf.clip_by_norm(x_grad, FLAGS.proj_norm)
elif FLAGS.proj_norm_type == 'li':
x_grad = tf.clip_by_value(
x_grad, -FLAGS.proj_norm, FLAGS.proj_norm)
else:
print("Other types of projection are not supported!!!")
assert False
# Clip gradient norm for now
if FLAGS.hmc:
# Step size should be tuned to get around 65% acceptance
def energy(x):
return FLAGS.temperature * \
model.forward(x, weights[0], label=LABEL_SPLIT[j], reuse=True)
x_last = hmc(x_mod, 15., 10, energy)
else:
x_last = x_mod - (lr) * x_grad
x_mod = x_last
x_mod = tf.clip_by_value(x_mod, 0, FLAGS.rescale)
counter = counter + 1
return counter, x_mod
steps, x_mod = tf.while_loop(c, langevin_step, (steps, x_mod))
energy_eval = model.forward(x_mod, weights[0], label=LABEL_SPLIT[j],
stop_at_grad=False, reuse=True)
x_grad = tf.gradients(FLAGS.temperature * energy_eval, [x_mod])[0]
x_grads.append(x_grad)
energy_negs.append(
model.forward(
tf.stop_gradient(x_mod),
weights[0],
label=LABEL_SPLIT[j],
stop_at_grad=False,
reuse=True))
test_x_mod = x_mod
temp = FLAGS.temperature
energy_neg = energy_negs[-1]
x_off = tf.reduce_mean(
tf.abs(x_mod[:tf.shape(X_SPLIT[j])[0]] - X_SPLIT[j]))
loss_energy = model.forward(
x_mod,
weights[0],
reuse=True,
label=LABEL,
stop_grad=True)
print("Finished processing loop construction ...")
target_vars = {}
if FLAGS.cclass or FLAGS.model_cclass:
label_sum = tf.reduce_sum(LABEL_SPLIT[0], axis=0)
label_prob = label_sum / tf.reduce_sum(label_sum)
label_ent = -tf.reduce_sum(label_prob *
tf.math.log(label_prob + 1e-7))
else:
label_ent = tf.zeros(1)
target_vars['label_ent'] = label_ent
if FLAGS.train:
if FLAGS.objective == 'logsumexp':
pos_term = temp * energy_pos
energy_neg_reduced = (energy_neg - tf.reduce_min(energy_neg))
coeff = tf.stop_gradient(tf.exp(-temp * energy_neg_reduced))
norm_constant = tf.stop_gradient(tf.reduce_sum(coeff)) + 1e-4
pos_loss = tf.reduce_mean(temp * energy_pos)
neg_loss = coeff * (-1 * temp * energy_neg) / norm_constant
loss_ml = FLAGS.ml_coeff * (pos_loss + tf.reduce_sum(neg_loss))
elif FLAGS.objective == 'cd':
pos_loss = tf.reduce_mean(temp * energy_pos)
neg_loss = -tf.reduce_mean(temp * energy_neg)
loss_ml = FLAGS.ml_coeff * (pos_loss + tf.reduce_sum(neg_loss))
elif FLAGS.objective == 'softplus':
loss_ml = FLAGS.ml_coeff * \
tf.nn.softplus(temp * (energy_pos - energy_neg))
loss_total = tf.reduce_mean(loss_ml)
if not FLAGS.zero_kl:
loss_total = loss_total + tf.reduce_mean(loss_energy)
loss_total = loss_total + \
FLAGS.l2_coeff * (tf.reduce_mean(tf.square(energy_pos)) + tf.reduce_mean(tf.square((energy_neg))))
print("Started gradient computation...")
gvs = optimizer.compute_gradients(loss_total)
gvs = [(k, v) for (k, v) in gvs if k is not None]
print("Applying gradients...")
tower_grads.append(gvs)
print("Finished applying gradients.")
target_vars['loss_ml'] = loss_ml
target_vars['total_loss'] = loss_total
target_vars['loss_energy'] = loss_energy
target_vars['weights'] = weights
target_vars['gvs'] = gvs
target_vars['X'] = X
target_vars['Y'] = Y
target_vars['LABEL'] = LABEL
target_vars['LABEL_POS'] = LABEL_POS
target_vars['X_NOISE'] = X_NOISE
target_vars['energy_pos'] = energy_pos
target_vars['energy_start'] = energy_negs[0]
if len(x_grads) >= 1:
target_vars['x_grad'] = x_grads[-1]
target_vars['x_grad_first'] = x_grads[0]
else:
target_vars['x_grad'] = tf.zeros(1)
target_vars['x_grad_first'] = tf.zeros(1)
target_vars['x_mod'] = x_mod
target_vars['x_off'] = x_off
target_vars['temp'] = temp
target_vars['energy_neg'] = energy_neg
target_vars['test_x_mod'] = test_x_mod
target_vars['eps_begin'] = eps_begin
if FLAGS.train:
grads = average_gradients(tower_grads)
train_op = optimizer.apply_gradients(grads)
target_vars['train_op'] = train_op
config = tf.ConfigProto()
if hvd.size() > 1:
config.gpu_options.visible_device_list = str(hvd.local_rank())
sess = tf.Session(config=config)
saver = loader = tf.train.Saver(max_to_keep=30, keep_checkpoint_every_n_hours=6)
total_parameters = 0
for variable in tf.trainable_variables():
# shape is an array of tf.Dimension
shape = variable.get_shape()
variable_parameters = 1
for dim in shape:
variable_parameters *= dim.value
total_parameters += variable_parameters
print("Model has a total of {} parameters".format(total_parameters))
sess.run(tf.global_variables_initializer())
resume_itr = 0
if (FLAGS.resume_iter != -1 or not FLAGS.train) and hvd.rank() == 0:
model_file = osp.join(logdir, 'model_{}'.format(FLAGS.resume_iter))
resume_itr = FLAGS.resume_iter
# saver.restore(sess, model_file)
optimistic_restore(sess, model_file)
sess.run(hvd.broadcast_global_variables(0))
return target_vars, saver, sess, resume_itr
def _spsa_gradients(loss_fn, x, delta=0.01, num_samples=16, num_iterations=4):
"""Compute gradient estimates using SPSA.
Args:
loss_fn: Callable that takes a single argument of shape [batch_size, ...]
and returns the loss contribution of each element of the batch as a
tensor of shape [batch_size].
x: List of tensors with a single element. We only support computation of
the gradient of the loss with respect to x[0]. We take a list as input to
keep the same API call as tf.gradients.
delta: The gradients are computed by computing the loss within x - delta and
x + delta.
num_samples: The total number of random samples used to compute the gradient
is `num_samples` times `num_iterations`. `num_samples` contributes to the
gradient by tiling `x` `num_samples` times.
num_iterations: The total number of random samples used to compute the
gradient is `num_samples` times `num_iterations`. `num_iterations`
contributes to the gradient by iterating using a `tf.while_loop`.
Returns:
List of tensors with a single element corresponding to the gradient of
loss_fn(x[0]) with respect to x[0].
"""
if len(x) != 1:
raise NotImplementedError('SPSA gradients with respect to multiple '
'variables is not supported.')
# loss_fn takes a single argument.
tensor = x[0]
def _get_delta(x):
return delta * tf.sign(
tf.random_uniform(
tf.shape(x), minval=-1., maxval=1., dtype=x.dtype))
# Process batch_size samples at a time.
def cond(i, *_):
return tf.less(i, num_iterations)
def loop_body(i, total_grad):
"""Compute gradient estimate."""
batch_size = tf.shape(tensor)[0]
# The tiled tensor has shape [num_samples, batch_size, ...]
tiled_tensor = tf.expand_dims(tensor, axis=0)
tiled_tensor = tf.tile(tiled_tensor,
[num_samples] + [1] * len(tensor.shape))
# The tiled tensor has now shape [2, num_samples, batch_size, ...].
delta = _get_delta(tiled_tensor)
tiled_tensor = tf.stack([tiled_tensor + delta, tiled_tensor - delta],
axis=0)
# Compute loss with shape [2, num_samples, batch_size].
losses = loss_fn(
tf.reshape(tiled_tensor, [2 * num_samples, batch_size] +
tensor.shape.as_list()[1:]))
losses = tf.reshape(losses, [2, num_samples, batch_size])
# Compute approximate gradient using broadcasting.
shape = losses.shape.as_list() + [1] * (len(tensor.shape) - 1)
shape = [(s or -1) for s in shape] # Remove None.
losses = tf.reshape(losses, shape)
g = tf.reduce_mean((losses[0] - losses[1]) / (2. * delta), axis=0)
return [i + 1, g / num_iterations + total_grad]
_, g = tf.while_loop(cond,
loop_body,
loop_vars=[tf.constant(0.),
tf.zeros_like(tensor)],
parallel_iterations=1,
back_prop=False)
return [g]
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
unique_ids = features["unique_ids"]
input_ids = features["input_ids"]
segment_ids = features["segment_ids"]
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
seq_length = modeling.get_shape_list(input_ids)[1]
query_length = FLAGS.max_query_length
batch_size = params["batch_size"]
_, attention_mask = make_attention_mask(batch_size, query_length,
seq_length)
with tf.variable_scope("bert") as scope:
word_logits = create_model(
bert_config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=attention_mask,
segment_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings,
scope=scope)
if not is_training:
with tf.variable_scope("bert", reuse=True) as scope:
output_ids = input_ids
word_id = tf.argmax(word_logits, axis=2, output_type=tf.int32)
# This operation implements: output_ids[:, 2] = word_id[:, 0]
word_id = tf.pad(word_id, [[0, 0], [2, seq_length - query_length]])
output_ids = input_ids + word_id * tf.one_hot(
2, seq_length, dtype=tf.int32)
def body(i, ids):
"""A decoding step."""
word_logits = create_model(
bert_config=bert_config,
is_training=is_training,
input_ids=ids,
input_mask=attention_mask,
segment_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings,
scope=scope)
word_id = tf.argmax(word_logits, axis=2, output_type=tf.int32)
# This operation implements: output_ids[:, 1 + i] = word_id[:, i - 1]
word_id = tf.pad(word_id, [[0, 0], [2, seq_length - query_length]])
return [
i + 1,
ids + word_id * tf.one_hot(i + 1, seq_length, dtype=tf.int32)
]
i0 = tf.constant(2)
c = lambda i, _: i < query_length - 1
_, output_ids = tf.while_loop(c, body, loop_vars=[i0, output_ids])
tvars = tf.trainable_variables()
initialized_variable_names = {}
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
# Computes the loss for word prediction.
loss = tf.losses.sparse_softmax_cross_entropy(
input_ids[:, 2:query_length],
word_logits,
reduction=tf.losses.Reduction.MEAN)
train_op = optimization.create_optimizer(loss, learning_rate,
num_train_steps,
num_warmup_steps, use_tpu)
output_spec = tf.estimator.tpu.TPUEstimatorSpec(
mode=mode, loss=loss, train_op=train_op, scaffold_fn=scaffold_fn)
elif mode == tf.estimator.ModeKeys.PREDICT:
predictions = {
"unique_ids": tf.identity(unique_ids),
"input_ids": output_ids,
"segment_ids": tf.minimum(segment_ids, 1),
"input_mask": tf.to_int32(tf.not_equal(output_ids, 0)),
"start_positions": tf.identity(features["start_positions"]),
"end_positions": tf.identity(features["end_positions"]),
"answer_types": tf.identity(features["answer_types"])
}
output_spec = tf.estimator.tpu.TPUEstimatorSpec(
mode=mode, predictions=predictions, scaffold_fn=scaffold_fn)
else:
raise ValueError("Only TRAIN and PREDICT modes are supported: %s" %
(mode))
return output_spec
def sample_sequence(*,
hparams,
length,
start_token=None,
batch_size=None,
context=None,
temperature=1,
top_k=0):
if start_token is None:
assert context is not None, 'Specify exactly one of start_token and context!'
else:
assert context is None, 'Specify exactly one of start_token and context!'
context = tf.fill([batch_size, 1], start_token)
def step(hparams, tokens, past=None):
lm_output = model.model(hparams=hparams,
X=tokens,
past=past,
reuse=tf.AUTO_REUSE)
logits = lm_output['logits'][:, :, :hparams.n_vocab]
presents = lm_output['present']
presents.set_shape(
model.past_shape(hparams=hparams, batch_size=batch_size))
return {
'logits': logits,
'presents': presents,
}
with tf.name_scope('sample_sequence'):
# Don't feed the last context token -- leave that to the loop below
# TODO: Would be slightly faster if we called step on the entire context,
# rather than leaving the last token transformer calculation to the while loop.
context_output = step(hparams, context[:, :-1])
def body(past, prev, output):
next_outputs = step(hparams, prev[:, tf.newaxis], past=past)
logits = next_outputs['logits'][:, -1, :] / \
tf.to_float(temperature)
logits = top_k_logits(logits, k=top_k)
samples = tf.multinomial(logits,
num_samples=1,
output_dtype=tf.int32)
return [
tf.concat([past, next_outputs['presents']], axis=-2),
tf.squeeze(samples, axis=[1]),
tf.concat([output, samples], axis=1),
]
def cond(*args):
return True
_, _, tokens = tf.while_loop(
cond=cond,
body=body,
maximum_iterations=length,
loop_vars=[
context_output['presents'],
context[:, -1],
context,
],
shape_invariants=[
tf.TensorShape(
model.past_shape(hparams=hparams, batch_size=batch_size)),
tf.TensorShape([batch_size]),
tf.TensorShape([batch_size, None]),
],
back_prop=False,
)
return tokens
