def testMakeSklearnPredictExtractor(self):
"""Tests that predictions are made from extracts for a single model."""
feature_extractor = features_extractor.FeaturesExtractor(
self._eval_config)
prediction_extractor = (
sklearn_predict_extractor._make_sklearn_predict_extractor(
self._eval_shared_model))
with beam.Pipeline() as pipeline:
predict_extracts = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in self._examples])
| 'BatchExamples' >> self._tfx_io.BeamSource()
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts() # pylint: disable=no-value-for-parameter
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >>
prediction_extractor.ptransform)
def check_result(actual):
try:
for item in actual:
self.assertEqual(item['labels'].shape,
item['predictions'].shape)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(predict_extracts, check_result)
def test_features_extractor_no_features(self):
model_spec = config_pb2.ModelSpec()
eval_config = config_pb2.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
tfx_io = tf_example_record.TFExampleBeamRecord(
raw_record_column_name=constants.ARROW_INPUT_COLUMN,
physical_format='inmem',
telemetry_descriptors=['testing'])
with beam.Pipeline() as pipeline:
result = (
pipeline | 'Create' >> beam.Create([b''] * 3)
| 'DecodeToRecordBatch' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform)
def check_result(got):
self.assertLen(got, 1)
self.assertIn(constants.FEATURES_KEY, got[0])
self.assertEmpty(got[0][constants.FEATURES_KEY])
self.assertIn(constants.INPUT_KEY, got[0])
self.assertLen(got[0][constants.INPUT_KEY], 3)
util.assert_that(result, check_result, label='CheckResult')
def testBatchSizeLimit(self):
temp_export_dir = self._getExportDir()
_, export_dir = batch_size_limited_classifier.simple_batch_size_limited_classifier(
None, temp_export_dir)
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir, tags=[tf.saved_model.SERVING])
eval_config = config.EvalConfig(model_specs=[config.ModelSpec()])
schema = text_format.Parse(
"""
feature {
name: "classes"
type: BYTES
}
feature {
name: "scores"
type: FLOAT
}
feature {
name: "labels"
type: BYTES
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
tensor_adapter_config=tensor_adapter_config)
examples = []
for _ in range(4):
examples.append(
self._makeExample(classes='first', scores=0.0, labels='third'))
with beam.Pipeline() as pipeline:
predict_extracts = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=1)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
def check_result(got):
try:
self.assertLen(got, 4)
# We can't verify the actual predictions, but we can verify the keys.
for item in got:
self.assertIn(constants.PREDICTIONS_KEY, item)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(predict_extracts, check_result, label='result')
def testSqlSliceKeyExtractorWithEmptySqlConfig(self):
eval_config = config_pb2.EvalConfig()
feature_extractor = features_extractor.FeaturesExtractor(
eval_config=eval_config)
slice_key_extractor = sql_slice_key_extractor.SqlSliceKeyExtractor(
eval_config)
tfx_io = tf_example_record.TFExampleBeamRecord(
physical_format='inmem',
telemetry_descriptors=['test', 'component'],
schema=_SCHEMA,
raw_record_column_name=constants.ARROW_INPUT_COLUMN)
examples = [
self._makeExample(fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string1'),
self._makeExample(fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string2'),
self._makeExample(fixed_int=2,
fixed_float=0.0,
fixed_string='fixed_string3')
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| slice_key_extractor.stage_name >>
slice_key_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
np.testing.assert_equal(
got[0][constants.SLICE_KEY_TYPES_KEY],
types.VarLenTensorValue.from_dense_rows(
[np.array([]),
np.array([]),
np.array([])]))
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result)
def testMakeSklearnPredictExtractorWithMultiModels(self):
"""Tests that predictions are made from extracts for multiple models."""
eval_config = config.EvalConfig(model_specs=[
config.ModelSpec(name='model1'),
config.ModelSpec(name='model2'),
])
eval_export_dir_1 = os.path.join(self._eval_export_dir, '1')
self._create_sklearn_model(eval_export_dir_1)
eval_shared_model_1 = sklearn_predict_extractor.custom_eval_shared_model(
eval_saved_model_path=eval_export_dir_1,
model_name='model1',
eval_config=eval_config)
eval_export_dir_2 = os.path.join(self._eval_export_dir, '2')
self._create_sklearn_model(eval_export_dir_2)
eval_shared_model_2 = sklearn_predict_extractor.custom_eval_shared_model(
eval_saved_model_path=eval_export_dir_2,
model_name='model2',
eval_config=eval_config)
feature_extractor = features_extractor.FeaturesExtractor(
self._eval_config)
prediction_extractor = (
sklearn_predict_extractor._make_sklearn_predict_extractor(
eval_shared_model={
'model1': eval_shared_model_1,
'model2': eval_shared_model_2,
}))
with beam.Pipeline() as pipeline:
predict_extracts = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in self._examples])
| 'BatchExamples' >> self._tfx_io.BeamSource()
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts() # pylint: disable=no-value-for-parameter
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >>
prediction_extractor.ptransform)
def check_result(actual):
try:
for item in actual:
self.assertEqual(item['labels'].shape,
item['predictions'].shape)
self.assertIn('model1', item['predictions'][0])
self.assertIn('model2', item['predictions'][0])
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(predict_extracts, check_result)
def benchmarkMiniPipeline(self):
"""Benchmark a "mini" TFMA - predict, slice and compute metrics.
Runs a "mini" version of TFMA in a Beam pipeline. Records the wall time
taken for the whole pipeline.
"""
self._init_model()
pipeline = self._create_beam_pipeline()
tfx_io = test_util.InMemoryTFExampleRecord(
schema=benchmark_utils.read_schema(
self._dataset.tf_metadata_schema_path()),
raw_record_column_name=constants.ARROW_INPUT_COLUMN)
raw_data = (
pipeline
| "Examples" >> beam.Create(
self._dataset.read_raw_dataset(
deserialize=False, limit=MAX_NUM_EXAMPLES))
| "BatchExamples" >> tfx_io.BeamSource()
| "InputsToExtracts" >> tfma.BatchedInputsToExtracts())
_ = (
raw_data
| "FeaturesExtractor" >> features_extractor.FeaturesExtractor(
eval_config=self._eval_config).ptransform
| "LabelsExtractor" >> labels_extractor.LabelsExtractor(
eval_config=self._eval_config).ptransform
| "ExampleWeightsExtractor" >> example_weights_extractor
.ExampleWeightsExtractor(eval_config=self._eval_config).ptransform
| "PredictionsExtractor" >> predictions_extractor.PredictionsExtractor(
eval_config=self._eval_config,
eval_shared_model=self._eval_shared_model).ptransform
| "UnbatchExtractor" >> unbatch_extractor.UnbatchExtractor().ptransform
| "SliceKeyExtractor" >> tfma.extractors.SliceKeyExtractor().ptransform
| "ComputeMetricsPlotsAndValidations" >>
metrics_plots_and_validations_evaluator
.MetricsPlotsAndValidationsEvaluator(
eval_config=self._eval_config,
eval_shared_model=self._eval_shared_model).ptransform)
start = time.time()
result = pipeline.run()
result.wait_until_finish()
end = time.time()
delta = end - start
self.report_benchmark(
iters=1,
wall_time=delta,
extras={
"num_examples": self._dataset.num_examples(limit=MAX_NUM_EXAMPLES)
})
def testPreprocessedFeaturesExtractor(self, save_as_keras,
preprocessing_function_names,
expected_extract_keys):
export_path = self.createModelWithMultipleDenseInputs(save_as_keras)
eval_config = config.EvalConfig(model_specs=[
config.ModelSpec(
preprocessing_function_names=preprocessing_function_names)
])
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_path, tags=[tf.saved_model.SERVING])
schema = self.createDenseInputsSchema()
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
transformation_extractor = (
transformed_features_extractor.TransformedFeaturesExtractor(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
tensor_adapter_config=tensor_adapter_config))
examples = [
self._makeExample(input_1=1.0, input_2=2.0),
self._makeExample(input_1=3.0, input_2=4.0),
self._makeExample(input_1=5.0, input_2=6.0),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| transformation_extractor.stage_name >>
transformation_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 2)
for item in got:
for extracts_key, feature_keys in expected_extract_keys.items(
):
self.assertIn(extracts_key, item)
for value in item[extracts_key]:
self.assertEqual(set(feature_keys),
set(value.keys()),
msg='got={}'.format(item))
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testTFlitePredictExtractorWithKerasModel(self, multi_model,
multi_output):
input1 = tf.keras.layers.Input(shape=(1, ), name='input1')
input2 = tf.keras.layers.Input(shape=(1, ), name='input2')
inputs = [input1, input2]
input_layer = tf.keras.layers.concatenate(inputs)
output_layers = {}
output_layers['output1'] = (tf.keras.layers.Dense(
1, activation=tf.nn.sigmoid, name='output1')(input_layer))
if multi_output:
output_layers['output2'] = (tf.keras.layers.Dense(
1, activation=tf.nn.sigmoid, name='output2')(input_layer))
model = tf.keras.models.Model(inputs, output_layers)
model.compile(optimizer=tf.keras.optimizers.Adam(lr=.001),
loss=tf.keras.losses.binary_crossentropy,
metrics=['accuracy'])
train_features = {'input1': [[0.0], [1.0]], 'input2': [[1.0], [0.0]]}
labels = {'output1': [[1], [0]]}
if multi_output:
labels['output2'] = [[1], [0]]
example_weights = {'output1': [1.0, 0.5]}
if multi_output:
example_weights['output2'] = [1.0, 0.5]
dataset = tf.data.Dataset.from_tensor_slices(
(train_features, labels, example_weights))
dataset = dataset.shuffle(buffer_size=1).repeat().batch(2)
model.fit(dataset, steps_per_epoch=1)
converter = tf.compat.v2.lite.TFLiteConverter.from_keras_model(model)
tflite_model = converter.convert()
tflite_model_dir = tempfile.mkdtemp()
with tf.io.gfile.GFile(os.path.join(tflite_model_dir, 'tflite'),
'wb') as f:
f.write(tflite_model)
model_specs = [config.ModelSpec(name='model1', model_type='tf_lite')]
if multi_model:
model_specs.append(
config.ModelSpec(name='model2', model_type='tf_lite'))
eval_config = config.EvalConfig(model_specs=model_specs)
eval_shared_models = [
self.createTestEvalSharedModel(
model_name='model1',
eval_saved_model_path=tflite_model_dir,
model_type='tf_lite')
]
if multi_model:
eval_shared_models.append(
self.createTestEvalSharedModel(
model_name='model2',
eval_saved_model_path=tflite_model_dir,
model_type='tf_lite'))
schema = text_format.Parse(
"""
feature {
name: "input1"
type: FLOAT
}
feature {
name: "input2"
type: FLOAT
}
feature {
name: "non_model_feature"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
predictor = tflite_predict_extractor.TFLitePredictExtractor(
eval_config=eval_config, eval_shared_model=eval_shared_models)
examples = [
self._makeExample(input1=0.0, input2=1.0, non_model_feature=0),
self._makeExample(input1=1.0, input2=0.0, non_model_feature=1),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| predictor.stage_name >> predictor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
got = got[0]
self.assertIn(constants.PREDICTIONS_KEY, got)
self.assertLen(got[constants.PREDICTIONS_KEY], 2)
for item in got[constants.PREDICTIONS_KEY]:
if multi_model:
self.assertIn('model1', item)
self.assertIn('model2', item)
if multi_output:
self.assertIn('Identity', item['model1'])
self.assertIn('Identity_1', item['model1'])
elif multi_output:
self.assertIn('Identity', item)
self.assertIn('Identity_1', item)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testPredictionsExtractorWithMultiClassModel(self):
temp_export_dir = self._getExportDir()
export_dir, _ = dnn_classifier.simple_dnn_classifier(
temp_export_dir, None, n_classes=3)
eval_config = config_pb2.EvalConfig(model_specs=[config_pb2.ModelSpec()])
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir, tags=[tf.saved_model.SERVING])
schema = text_format.Parse(
"""
feature {
name: "age"
type: FLOAT
}
feature {
name: "langauge"
type: BYTES
}
feature {
name: "label"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(
eval_config=eval_config,
tensor_representations=tensor_adapter_config.tensor_representations)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config, eval_shared_model=eval_shared_model)
examples = [
self._makeExample(age=1.0, language='english', label=0),
self._makeExample(age=2.0, language='chinese', label=1),
self._makeExample(age=3.0, language='english', label=2),
self._makeExample(age=4.0, language='chinese', label=1),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=4)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
# We can't verify the actual predictions, but we can verify the keys.
for item in got:
self.assertIn(constants.PREDICTIONS_KEY, item)
for pred_key in ('probabilities', 'all_classes'):
self.assertIn(pred_key, item[constants.PREDICTIONS_KEY])
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testBatchSizeLimitWithKerasModel(self):
input1 = tf.keras.layers.Input(shape=(1,), batch_size=1, name='input1')
input2 = tf.keras.layers.Input(shape=(1,), batch_size=1, name='input2')
inputs = [input1, input2]
input_layer = tf.keras.layers.concatenate(inputs)
def add_1(tensor):
return tf.add_n([tensor, tf.constant(1.0, shape=(1, 2))])
assert_layer = tf.keras.layers.Lambda(add_1)(input_layer)
model = tf.keras.models.Model(inputs, assert_layer)
model.compile(
optimizer=tf.keras.optimizers.Adam(lr=.001),
loss=tf.keras.losses.binary_crossentropy,
metrics=['accuracy'])
export_dir = self._getExportDir()
model.save(export_dir, save_format='tf')
eval_config = config.EvalConfig(model_specs=[config.ModelSpec()])
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir, tags=[tf.saved_model.SERVING])
schema = text_format.Parse(
"""
tensor_representation_group {
key: ""
value {
tensor_representation {
key: "input1"
value {
dense_tensor {
column_name: "input1"
shape { dim { size: 1 } }
}
}
}
tensor_representation {
key: "input2"
value {
dense_tensor {
column_name: "input2"
shape { dim { size: 1 } }
}
}
}
}
}
feature {
name: "input1"
type: FLOAT
}
feature {
name: "input2"
type: FLOAT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
tensor_adapter_config=tensor_adapter_config)
examples = []
for _ in range(4):
examples.append(self._makeExample(input1=0.0, input2=1.0))
with beam.Pipeline() as pipeline:
predict_extracts = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=1)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 4)
# We can't verify the actual predictions, but we can verify the keys.
for item in got:
self.assertIn(constants.PREDICTIONS_KEY, item)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(predict_extracts, check_result, label='result')
def testPredictionsExtractorWithSequentialKerasModel(self):
# Note that the input will be called 'test_input'
model = tf.keras.models.Sequential([
tf.keras.layers.Dense(
1, activation=tf.nn.sigmoid, input_shape=(2,), name='test')
])
model.compile(
optimizer=tf.keras.optimizers.Adam(lr=.001),
loss=tf.keras.losses.binary_crossentropy,
metrics=['accuracy'])
train_features = {'test_input': [[0.0, 0.0], [1.0, 1.0]]}
labels = [[1], [0]]
example_weights = [1.0, 0.5]
dataset = tf.data.Dataset.from_tensor_slices(
(train_features, labels, example_weights))
dataset = dataset.shuffle(buffer_size=1).repeat().batch(2)
model.fit(dataset, steps_per_epoch=1)
export_dir = self._getExportDir()
model.save(export_dir, save_format='tf')
eval_config = config.EvalConfig(model_specs=[config.ModelSpec()])
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir, tags=[tf.saved_model.SERVING])
schema = text_format.Parse(
"""
tensor_representation_group {
key: ""
value {
tensor_representation {
key: "test"
value {
dense_tensor {
column_name: "test"
shape { dim { size: 2 } }
}
}
}
}
}
feature {
name: "test"
type: FLOAT
}
feature {
name: "non_model_feature"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
tensor_adapter_config=tensor_adapter_config)
# Notice that the features are 'test' but the model expects 'test_input'.
# This tests that the PredictExtractor properly handles this case.
examples = [
self._makeExample(test=[0.0, 0.0],
non_model_feature=0), # should be ignored by model
self._makeExample(test=[1.0, 1.0],
non_model_feature=1), # should be ignored by model
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
# We can't verify the actual predictions, but we can verify the keys.
for item in got:
self.assertIn(constants.PREDICTIONS_KEY, item)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testPredictionsExtractorWithRegressionModel(self):
temp_export_dir = self._getExportDir()
export_dir, _ = (
fixed_prediction_estimator_extra_fields
.simple_fixed_prediction_estimator_extra_fields(temp_export_dir, None))
eval_config = config.EvalConfig(model_specs=[config.ModelSpec()])
eval_shared_model = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir, tags=[tf.saved_model.SERVING])
schema = text_format.Parse(
"""
feature {
name: "prediction"
type: FLOAT
}
feature {
name: "label"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
feature {
name: "fixed_float"
type: FLOAT
}
feature {
name: "fixed_string"
type: BYTES
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
tensor_adapter_config=tensor_adapter_config)
examples = [
self._makeExample(
prediction=0.2,
label=1.0,
fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string1'),
self._makeExample(
prediction=0.8,
label=0.0,
fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string2'),
self._makeExample(
prediction=0.5,
label=0.0,
fixed_int=2,
fixed_float=1.0,
fixed_string='fixed_string3')
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
self.assertIn(constants.PREDICTIONS_KEY, got[0])
expected_preds = [0.2, 0.8, 0.5]
self.assertAlmostEqual(got[0][constants.PREDICTIONS_KEY],
expected_preds)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testPredictionsExtractorWithMultiModels(self):
temp_export_dir = self._getExportDir()
export_dir1, _ = multi_head.simple_multi_head(temp_export_dir, None)
export_dir2, _ = multi_head.simple_multi_head(temp_export_dir, None)
eval_config = config.EvalConfig(model_specs=[
config.ModelSpec(name='model1'),
config.ModelSpec(name='model2')
])
eval_shared_model1 = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir1, tags=[tf.saved_model.SERVING])
eval_shared_model2 = self.createTestEvalSharedModel(
eval_saved_model_path=export_dir2, tags=[tf.saved_model.SERVING])
schema = text_format.Parse(
"""
feature {
name: "age"
type: FLOAT
}
feature {
name: "langauge"
type: BYTES
}
feature {
name: "english_label"
type: FLOAT
}
feature {
name: "chinese_label"
type: FLOAT
}
feature {
name: "other_label"
type: FLOAT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config=eval_config,
eval_shared_model={
'model1': eval_shared_model1,
'model2': eval_shared_model2
},
tensor_adapter_config=tensor_adapter_config)
examples = [
self._makeExample(
age=1.0,
language='english',
english_label=1.0,
chinese_label=0.0,
other_label=0.0),
self._makeExample(
age=1.0,
language='chinese',
english_label=0.0,
chinese_label=1.0,
other_label=0.0),
self._makeExample(
age=2.0,
language='english',
english_label=1.0,
chinese_label=0.0,
other_label=0.0),
self._makeExample(
age=2.0,
language='other',
english_label=0.0,
chinese_label=1.0,
other_label=1.0)
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=4)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
for item in got:
# We can't verify the actual predictions, but we can verify the keys
self.assertIn(constants.PREDICTIONS_KEY, item)
for pred in item[constants.PREDICTIONS_KEY]:
for model_name in ('model1', 'model2'):
self.assertIn(model_name, pred)
for output_name in ('chinese_head', 'english_head',
'other_head'):
for pred_key in ('logistic', 'probabilities', 'all_classes'):
self.assertIn(output_name + '/' + pred_key,
pred[model_name])
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testSqlSliceKeyExtractorWithMultipleSchema(self):
eval_config = config_pb2.EvalConfig(slicing_specs=[
config_pb2.SlicingSpec(slice_keys_sql="""
SELECT
STRUCT(fixed_string)
FROM
example.fixed_string,
example.fixed_int
WHERE fixed_int = 1
""")
])
feature_extractor = features_extractor.FeaturesExtractor(
eval_config=eval_config)
slice_key_extractor = sql_slice_key_extractor.SqlSliceKeyExtractor(
eval_config)
record_batch_1 = pa.RecordBatch.from_arrays([
pa.array([[1], [1], [2]], type=pa.list_(pa.int64())),
pa.array([[1.0], [1.0], [2.0]], type=pa.list_(pa.float64())),
pa.array([['fixed_string1'], ['fixed_string2'], ['fixed_string3']],
type=pa.list_(pa.string())),
], ['fixed_int', 'fixed_float', 'fixed_string'])
record_batch_2 = pa.RecordBatch.from_arrays([
pa.array([[1], [1], [2]], type=pa.list_(pa.int64())),
pa.array([[1.0], [1.0], [2.0]], type=pa.list_(pa.float64())),
pa.array([['fixed_string1'], ['fixed_string2'], ['fixed_string3']],
type=pa.list_(pa.string())),
pa.array([['extra_field1'], ['extra_field2'], ['extra_field3']],
type=pa.list_(pa.string())),
], ['fixed_int', 'fixed_float', 'fixed_string', 'extra_field'])
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([record_batch_1, record_batch_2],
reshuffle=False)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| slice_key_extractor.stage_name >>
slice_key_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 2)
np.testing.assert_equal(
got[0][constants.SLICE_KEY_TYPES_KEY],
types.VarLenTensorValue.from_dense_rows([
slicer_lib.slice_keys_to_numpy_array([
(('fixed_string', 'fixed_string1'), )
]),
slicer_lib.slice_keys_to_numpy_array([
(('fixed_string', 'fixed_string2'), )
]),
np.array([])
]))
np.testing.assert_equal(
got[1][constants.SLICE_KEY_TYPES_KEY],
types.VarLenTensorValue.from_dense_rows([
slicer_lib.slice_keys_to_numpy_array([
(('fixed_string', 'fixed_string1'), )
]),
slicer_lib.slice_keys_to_numpy_array([
(('fixed_string', 'fixed_string2'), )
]),
np.array([])
]))
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result)
def testLabelsExtractorMultiModel(self):
model_spec1 = config.ModelSpec(name='model1', label_key='label')
model_spec2 = config.ModelSpec(name='model2',
label_keys={
'output1': 'label1',
'output2': 'label2'
})
eval_config = config.EvalConfig(model_specs=[model_spec1, model_spec2])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
label_extractor = labels_extractor.LabelsExtractor(eval_config)
schema = text_format.Parse(
"""
feature {
name: "label"
type: FLOAT
}
feature {
name: "label1"
type: FLOAT
}
feature {
name: "label2"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
examples = [
self._makeExample(label=1.0, label1=1.0, label2=0.0, fixed_int=1),
self._makeExample(label=1.0, label1=1.0, label2=1.0, fixed_int=1)
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| label_extractor.stage_name >> label_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
for model_name in ('model1', 'model2'):
self.assertIn(model_name,
got[0][constants.LABELS_KEY][0])
self.assertAlmostEqual(
got[0][constants.LABELS_KEY][0]['model1'],
np.array([1.0]))
self.assertDictElementsAlmostEqual(
got[0][constants.LABELS_KEY][0]['model2'], {
'output1': np.array([1.0]),
'output2': np.array([0.0])
})
for model_name in ('model1', 'model2'):
self.assertIn(model_name,
got[0][constants.LABELS_KEY][1])
self.assertAlmostEqual(
got[0][constants.LABELS_KEY][1]['model1'],
np.array([1.0]))
self.assertDictElementsAlmostEqual(
got[0][constants.LABELS_KEY][1]['model2'], {
'output1': np.array([1.0]),
'output2': np.array([1.0])
})
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testExampleWeightsExtractorMultiOutput(self):
model_spec = config_pb2.ModelSpec(
example_weight_keys={
'output1': 'example_weight1',
'output2': 'example_weight2',
'output3': 'example_weight3',
})
eval_config = config_pb2.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
example_weight_extractor = example_weights_extractor.ExampleWeightsExtractor(
eval_config)
schema = text_format.Parse(
"""
feature {
name: "example_weight1"
type: FLOAT
}
feature {
name: "example_weight2"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
examples = [
self._makeExample(example_weight1=0.5,
example_weight2=0.5,
fixed_int=1),
self._makeExample(example_weight1=0.0,
example_weight2=1.0,
fixed_int=1)
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| example_weight_extractor.stage_name >>
example_weight_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
self.assertAllClose(
got[0][constants.EXAMPLE_WEIGHTS_KEY], {
'output1': np.array([0.5, 0.0]),
'output2': np.array([0.5, 1.0]),
})
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testUnbatchExtractor(self):
model_spec = config_pb2.ModelSpec(label_key='label',
example_weight_key='example_weight')
eval_config = config_pb2.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
label_extractor = labels_extractor.LabelsExtractor(eval_config)
example_weight_extractor = (
example_weights_extractor.ExampleWeightsExtractor(eval_config))
predict_extractor = predictions_extractor.PredictionsExtractor(
eval_config)
unbatch_inputs_extractor = unbatch_extractor.UnbatchExtractor()
schema = text_format.Parse(
"""
feature {
name: "label"
type: FLOAT
}
feature {
name: "example_weight"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
feature {
name: "fixed_float"
type: FLOAT
}
feature {
name: "fixed_string"
type: BYTES
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
examples = [
self._makeExample(label=1.0,
example_weight=0.5,
fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string1'),
self._makeExample(label=0.0,
example_weight=0.0,
fixed_int=1,
fixed_float=1.0,
fixed_string='fixed_string2'),
self._makeExample(label=0.0,
example_weight=1.0,
fixed_int=2,
fixed_float=0.0,
fixed_string='fixed_string3')
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create(
[e.SerializeToString() for e in examples], reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| label_extractor.stage_name >> label_extractor.ptransform
| example_weight_extractor.stage_name >>
example_weight_extractor.ptransform
| predict_extractor.stage_name >> predict_extractor.ptransform
| unbatch_inputs_extractor.stage_name >>
unbatch_inputs_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 3)
self.assertDictElementsAlmostEqual(
got[0][constants.FEATURES_KEY], {
'fixed_int': np.array([1]),
'fixed_float': np.array([1.0]),
})
self.assertEqual(
got[0][constants.FEATURES_KEY]['fixed_string'],
np.array([b'fixed_string1']))
self.assertAlmostEqual(got[0][constants.LABELS_KEY],
np.array([1.0]))
self.assertAlmostEqual(
got[0][constants.EXAMPLE_WEIGHTS_KEY], np.array([0.5]))
self.assertDictElementsAlmostEqual(
got[1][constants.FEATURES_KEY], {
'fixed_int': np.array([1]),
'fixed_float': np.array([1.0]),
})
self.assertEqual(
got[1][constants.FEATURES_KEY]['fixed_string'],
np.array([b'fixed_string2']))
self.assertAlmostEqual(got[1][constants.LABELS_KEY],
np.array([0.0]))
self.assertAlmostEqual(
got[1][constants.EXAMPLE_WEIGHTS_KEY], np.array([0.0]))
self.assertDictElementsAlmostEqual(
got[2][constants.FEATURES_KEY], {
'fixed_int': np.array([2]),
'fixed_float': np.array([0.0]),
})
self.assertEqual(
got[2][constants.FEATURES_KEY]['fixed_string'],
np.array([b'fixed_string3']))
self.assertAlmostEqual(got[2][constants.LABELS_KEY],
np.array([0.0]))
self.assertAlmostEqual(
got[2][constants.EXAMPLE_WEIGHTS_KEY], np.array([1.0]))
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testFeaturesExtractor(self):
model_spec = config.ModelSpec()
eval_config = config.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
schema = text_format.Parse(
"""
feature {
name: "example_weight"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
feature {
name: "fixed_float"
type: FLOAT
}
feature {
name: "fixed_string"
type: BYTES
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
example_kwargs = [
{
'fixed_int': 1,
'fixed_float': 1.0,
'fixed_string': 'fixed_string1'
},
{
'fixed_int': 1,
'fixed_float': 1.0,
'fixed_string': 'fixed_string2'
},
{
'fixed_int': 2,
'fixed_float': 0.0,
'fixed_string': 'fixed_string3'
},
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([
self._makeExample(**kwargs).SerializeToString()
for kwargs in example_kwargs
],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
self.assertDictElementsAlmostEqual(
got[0][constants.FEATURES_KEY][0], {
'fixed_int': np.array([1]),
'fixed_float': np.array([1.0]),
})
self.assertEqual(
got[0][constants.FEATURES_KEY][0]['fixed_string'],
np.array([b'fixed_string1']))
self.assertDictElementsAlmostEqual(
got[0][constants.FEATURES_KEY][1], {
'fixed_int': np.array([1]),
'fixed_float': np.array([1.0]),
})
self.assertEqual(
got[0][constants.FEATURES_KEY][1]['fixed_string'],
np.array([b'fixed_string2']))
self.assertDictElementsAlmostEqual(
got[0][constants.FEATURES_KEY][2], {
'fixed_int': np.array([2]),
'fixed_float': np.array([0.0]),
})
self.assertEqual(
got[0][constants.FEATURES_KEY][2]['fixed_string'],
np.array([b'fixed_string3']))
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testPredictionsExtractorWithoutEvalSharedModel(self):
model_spec1 = config_pb2.ModelSpec(
name='model1', prediction_key='prediction')
model_spec2 = config_pb2.ModelSpec(
name='model2',
prediction_keys={
'output1': 'prediction1',
'output2': 'prediction2'
})
eval_config = config_pb2.EvalConfig(model_specs=[model_spec1, model_spec2])
schema = text_format.Parse(
"""
tensor_representation_group {
key: ""
value {
tensor_representation {
key: "fixed_int"
value {
dense_tensor {
column_name: "fixed_int"
}
}
}
}
}
feature {
name: "prediction"
type: FLOAT
}
feature {
name: "prediction1"
type: FLOAT
}
feature {
name: "prediction2"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfx_io.ArrowSchema(),
tensor_representations=tfx_io.TensorRepresentations())
feature_extractor = features_extractor.FeaturesExtractor(
eval_config=eval_config,
tensor_representations=tensor_adapter_config.tensor_representations)
prediction_extractor = predictions_extractor.PredictionsExtractor(
eval_config)
examples = [
self._makeExample(
prediction=1.0, prediction1=1.0, prediction2=0.0, fixed_int=1),
self._makeExample(
prediction=1.0, prediction1=1.0, prediction2=1.0, fixed_int=1)
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| prediction_extractor.stage_name >> prediction_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
for model_name in ('model1', 'model2'):
self.assertIn(model_name, got[0][constants.PREDICTIONS_KEY])
self.assertAllClose(got[0][constants.PREDICTIONS_KEY]['model1'],
np.array([1.0, 1.0]))
self.assertAllClose(got[0][constants.PREDICTIONS_KEY]['model2'], {
'output1': np.array([1.0, 1.0]),
'output2': np.array([0.0, 1.0])
})
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testTFJSPredictExtractorWithKerasModel(self, multi_model, multi_output):
if not _TFJS_IMPORTED:
self.skipTest('This test requires TensorFlow JS.')
input1 = tf.keras.layers.Input(shape=(1,), name='input1')
input2 = tf.keras.layers.Input(shape=(1,), name='input2')
inputs = [input1, input2]
input_layer = tf.keras.layers.concatenate(inputs)
output_layers = {}
output_layers['output1'] = (
tf.keras.layers.Dense(1, activation=tf.nn.sigmoid,
name='output1')(input_layer))
if multi_output:
output_layers['output2'] = (
tf.keras.layers.Dense(1, activation=tf.nn.sigmoid,
name='output2')(input_layer))
model = tf.keras.models.Model(inputs, output_layers)
model.compile(
optimizer=tf.keras.optimizers.Adam(lr=.001),
loss=tf.keras.losses.binary_crossentropy,
metrics=['accuracy'])
train_features = {'input1': [[0.0], [1.0]], 'input2': [[1.0], [0.0]]}
labels = {'output1': [[1], [0]]}
if multi_output:
labels['output2'] = [[1], [0]]
example_weights = {'output1': [1.0, 0.5]}
if multi_output:
example_weights['output2'] = [1.0, 0.5]
dataset = tf.data.Dataset.from_tensor_slices(
(train_features, labels, example_weights))
dataset = dataset.shuffle(buffer_size=1).repeat().batch(2)
model.fit(dataset, steps_per_epoch=1)
src_model_path = tempfile.mkdtemp()
model.save(src_model_path)
dst_model_path = tempfile.mkdtemp()
converter.convert([
'--input_format=tf_saved_model',
'--saved_model_tags=serve',
'--signature_name=serving_default',
src_model_path,
dst_model_path,
])
model_specs = [config_pb2.ModelSpec(name='model1', model_type='tf_js')]
if multi_model:
model_specs.append(
config_pb2.ModelSpec(name='model2', model_type='tf_js'))
eval_config = config_pb2.EvalConfig(model_specs=model_specs)
eval_shared_models = [
self.createTestEvalSharedModel(
model_name='model1',
eval_saved_model_path=dst_model_path,
model_type='tf_js')
]
if multi_model:
eval_shared_models.append(
self.createTestEvalSharedModel(
model_name='model2',
eval_saved_model_path=dst_model_path,
model_type='tf_js'))
schema = text_format.Parse(
"""
feature {
name: "input1"
type: FLOAT
}
feature {
name: "input2"
type: FLOAT
}
feature {
name: "non_model_feature"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
predictor = tfjs_predict_extractor.TFJSPredictExtractor(
eval_config=eval_config, eval_shared_model=eval_shared_models)
examples = [
self._makeExample(input1=0.0, input2=1.0, non_model_feature=0),
self._makeExample(input1=1.0, input2=0.0, non_model_feature=1),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([e.SerializeToString() for e in examples],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=2)
| 'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| predictor.stage_name >> predictor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
got = got[0]
self.assertIn(constants.PREDICTIONS_KEY, got)
for model in ('model1', 'model2') if multi_model else (''):
per_model_result = got[constants.PREDICTIONS_KEY]
if model:
self.assertIn(model, per_model_result)
per_model_result = per_model_result[model]
for output in ('Identity', 'Identity_1') if multi_output else (''):
per_output_result = per_model_result
if output:
self.assertIn(output, per_output_result)
per_output_result = per_output_result[output]
self.assertLen(per_output_result, 2)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testExampleWeightsExtractor(self, example_weight):
model_spec = config_pb2.ModelSpec(example_weight_key=example_weight)
eval_config = config_pb2.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
example_weight_extractor = (
example_weights_extractor.ExampleWeightsExtractor(eval_config))
example_weight_feature = ''
if example_weight is not None:
example_weight_feature = """
feature {
name: "%s"
type: FLOAT
}
""" % example_weight
schema = text_format.Parse(
example_weight_feature + """
feature {
name: "fixed_int"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
def maybe_add_key(d, key, value):
if key is not None:
d[key] = value
return d
example_kwargs = [
maybe_add_key({
'fixed_int': 1,
}, example_weight, 0.5),
maybe_add_key({
'fixed_int': 1,
}, example_weight, 0.0),
maybe_add_key({
'fixed_int': 2,
}, example_weight, 1.0),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([
self._makeExample(**kwargs).SerializeToString()
for kwargs in example_kwargs
],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| example_weight_extractor.stage_name >>
example_weight_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
if example_weight:
self.assertAllClose(
got[0][constants.EXAMPLE_WEIGHTS_KEY],
np.array([0.5, 0.0, 1.0]))
else:
self.assertNotIn(constants.EXAMPLE_WEIGHTS_KEY, got[0])
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def test_features_extractor(self):
model_spec = config_pb2.ModelSpec()
eval_config = config_pb2.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
schema = text_format.Parse(
"""
feature {
name: "example_weight"
type: FLOAT
}
feature {
name: "fixed_int"
type: INT
}
feature {
name: "fixed_float"
type: FLOAT
}
feature {
name: "fixed_string"
type: BYTES
}
""", schema_pb2.Schema())
tfx_io = tf_example_record.TFExampleBeamRecord(
schema=schema,
raw_record_column_name=constants.ARROW_INPUT_COLUMN,
physical_format='inmem',
telemetry_descriptors=['testing'])
example_kwargs = [
{
'fixed_int': 1,
'fixed_float': 1.0,
'fixed_string': 'fixed_string1'
},
{
'fixed_int': 1,
'fixed_float': 1.0,
'fixed_string': 'fixed_string2'
},
{
'fixed_int': 2,
'fixed_float': 0.0,
'fixed_string': 'fixed_string3'
},
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([
self._makeExample(**kwargs).SerializeToString()
for kwargs in example_kwargs
],
reshuffle=False)
| 'DecodeToRecordBatch' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
self.assertIn(constants.FEATURES_KEY, got[0])
self.assertLen(got[0][constants.FEATURES_KEY],
4) # 4 features
self.assertIn('example_weight',
got[0][constants.FEATURES_KEY])
# Arrays of type np.object won't compare with assertAllClose
self.assertEqual(
got[0][constants.FEATURES_KEY]
['example_weight'].tolist(), [None, None, None])
self.assertIn('fixed_int', got[0][constants.FEATURES_KEY])
self.assertAllClose(
got[0][constants.FEATURES_KEY]['fixed_int'],
np.array([1, 1, 2]))
self.assertIn('fixed_float',
got[0][constants.FEATURES_KEY])
self.assertAllClose(
got[0][constants.FEATURES_KEY]['fixed_float'],
np.array([1.0, 1.0, 0.0]))
self.assertIn('fixed_string',
got[0][constants.FEATURES_KEY])
# Arrays of type np.object won't compare with assertAllClose
self.assertEqual(
got[0][
constants.FEATURES_KEY]['fixed_string'].tolist(),
[b'fixed_string1', b'fixed_string2', b'fixed_string3'])
self.assertIn(constants.INPUT_KEY, got[0])
self.assertLen(got[0][constants.INPUT_KEY],
3) # 3 examples
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def testLabelsExtractor(self, label):
model_spec = config.ModelSpec(label_key=label)
eval_config = config.EvalConfig(model_specs=[model_spec])
feature_extractor = features_extractor.FeaturesExtractor(eval_config)
label_extractor = labels_extractor.LabelsExtractor(eval_config)
label_feature = ''
if label is not None:
label_feature = """
feature {
name: "%s"
type: FLOAT
}
""" % label
schema = text_format.Parse(
label_feature + """
feature {
name: "fixed_int"
type: INT
}
""", schema_pb2.Schema())
tfx_io = test_util.InMemoryTFExampleRecord(
schema=schema, raw_record_column_name=constants.ARROW_INPUT_COLUMN)
def maybe_add_key(d, key, value):
if key is not None:
d[key] = value
return d
example_kwargs = [
maybe_add_key({
'fixed_int': 1,
}, label, 1.0),
maybe_add_key({
'fixed_int': 1,
}, label, 0.0),
maybe_add_key({
'fixed_int': 2,
}, label, 0.0),
]
with beam.Pipeline() as pipeline:
# pylint: disable=no-value-for-parameter
result = (
pipeline
| 'Create' >> beam.Create([
self._makeExample(**kwargs).SerializeToString()
for kwargs in example_kwargs
],
reshuffle=False)
| 'BatchExamples' >> tfx_io.BeamSource(batch_size=3)
|
'InputsToExtracts' >> model_eval_lib.BatchedInputsToExtracts()
| feature_extractor.stage_name >> feature_extractor.ptransform
| label_extractor.stage_name >> label_extractor.ptransform)
# pylint: enable=no-value-for-parameter
def check_result(got):
try:
self.assertLen(got, 1)
tf.compat.v1.logging.error('HERE >>>> {}'.format(got))
self.assertAlmostEqual(
got[0][constants.LABELS_KEY][0],
np.array([1.0]) if label is not None else None)
self.assertAlmostEqual(
got[0][constants.LABELS_KEY][1],
np.array([0.0]) if label is not None else None)
self.assertAlmostEqual(
got[0][constants.LABELS_KEY][2],
np.array([0.0]) if label is not None else None)
except AssertionError as err:
raise util.BeamAssertException(err)
util.assert_that(result, check_result, label='result')
def _runMiniPipeline(self, multi_model):
"""Benchmark a "mini" TFMA - predict, slice and compute metrics.
Runs a "mini" version of TFMA in a Beam pipeline. Records the wall time
taken for the whole pipeline.
Args:
multi_model: True if multiple models should be used in the benchmark.
"""
self._init_model(multi_model, validation=False)
pipeline = self._create_beam_pipeline()
tfx_io = test_util.InMemoryTFExampleRecord(
schema=benchmark_utils.read_schema(
self._dataset.tf_metadata_schema_path()),
raw_record_column_name=constants.ARROW_INPUT_COLUMN)
raw_data = (pipeline
| "Examples" >> beam.Create(
self._dataset.read_raw_dataset(
deserialize=False, limit=self._max_num_examples()))
| "BatchExamples" >> tfx_io.BeamSource()
| "InputsToExtracts" >> tfma.BatchedInputsToExtracts())
def rescale_labels(extracts):
# Transform labels to [0, 1] so we can test metrics that require labels in
# that range.
result = copy.copy(extracts)
result[constants.LABELS_KEY] = self._transform_labels(
extracts[constants.LABELS_KEY])
return result
_ = (raw_data
| "FeaturesExtractor" >> features_extractor.FeaturesExtractor(
eval_config=self._eval_config).ptransform
| "LabelsExtractor" >> labels_extractor.LabelsExtractor(
eval_config=self._eval_config).ptransform
| "RescaleLabels" >> beam.Map(rescale_labels)
| "ExampleWeightsExtractor" >> example_weights_extractor.
ExampleWeightsExtractor(eval_config=self._eval_config).ptransform
| "PredictionsExtractor" >>
predictions_extractor.PredictionsExtractor(
eval_config=self._eval_config,
eval_shared_model=self._eval_shared_models).ptransform
| "UnbatchExtractor" >>
unbatch_extractor.UnbatchExtractor().ptransform
| "SliceKeyExtractor" >>
tfma.extractors.SliceKeyExtractor().ptransform
| "ComputeMetricsPlotsAndValidations" >>
metrics_plots_and_validations_evaluator.
MetricsPlotsAndValidationsEvaluator(
eval_config=self._eval_config,
eval_shared_model=self._eval_shared_models).ptransform)
start = time.time()
for _ in range(_ITERS):
result = pipeline.run()
result.wait_until_finish()
end = time.time()
delta = end - start
self.report_benchmark(
iters=_ITERS,
wall_time=delta,
extras={
"num_examples":
self._dataset.num_examples(limit=self._max_num_examples())
})
