#! /usr/bin/env python
"""
Test for parameter operations
"""
import os
import sys
from test_library import add_package_path
add_package_path('model-container')
import model_container as nmc
my_model_container = nmc.ModelContainer(None)
my_model_container.Read("cells/purkinje/edsjb1994.ndf")
som_cm = my_model_container.GetParameter("/Purkinje/segments/soma", "CM")
som_erev = my_model_container.GetParameter("/Purkinje/segments/soma/cat",
"Erev")
print "Soma CM is %f and EREV is %f" % (som_cm, som_erev)
my_model_container.SetParameter("/Purkinje/segments/soma", "CM", 300.0)
som_cm = my_model_container.GetParameter("/Purkinje/segments/soma", "CM")
print "Soma CM is %f and EREV is %f" % (som_cm, som_erev)
print "Done!"
#! /usr/bin/env python
"""
"""
import os
import sys
import pdb
STEPS = 1000
TIME_STEP = 0.002
TIME_GRANULARITY = 1e-9
from test_library import add_package_path
add_package_path("chemesis3")
from chemesis3.components import Pool
soma_ca = [
Pool(),
Pool(),
Pool(),
]
soma_ca[0].SetSerial(2)
soma_ca[0].SetReactionFlags([0])
soma_ca[0].SetReactions([0])
soma_ca[0].dConcentrationInit = 0.001
soma_ca[0].dConcentration = 0.0
#! /usr/bin/env python
"""
This test checks the struct wrapper for the pulsegen
data struct. SWIG converts it into a low level class.
"""
import os
import sys
import pdb
from test_library import add_package_path
add_package_path("experiment")
from experiment.perfectclamp import PerfectClamp
pc = PerfectClamp("Test clamp")
dtime = 0.0
steps = 200
stepsize = 0.5
voltage_out = 0.111
command_voltage = -0.06
pc.SetCommand(command_voltage)
pc.AddVariable(voltage_out)
pc.Initialize()
for i in range(0, 20):
a test for cal1 use in python
with a model container.
"""
import os
import pdb
import sys
from test_library import add_package_path
os.environ['NEUROSPACES_NMC_MODELS'] = os.path.join('/', 'usr', 'local',
'neurospaces', 'models',
'library')
# have to go a level deeper since multiple imports would
# register the neurospaces module.
add_package_path("model-container")
add_package_path("chemesis3")
add_package_path("experiment")
STEPS = 1000
TIME_STEP = 0.002
TIME_GRANULARITY = 1e-9
#---------------------------------------------------------------------------
from model_container import ModelContainer
my_model = ModelContainer()
my_model.Read("chemesis/cal1.ndf")
#! /usr/bin/env python
"""
test of the perfectclamp bindings.
"""
import os
import sys
import pdb
from test_library import add_package_path
add_package_path("heccer")
add_package_path("experiment")
from heccer import Heccer
from heccer import Compartment
from heccer import Intermediary
from heccer.heccer_base import HECCER_DUMP_VM_COMPARTMENT_MATRIX
from heccer.heccer_base import HECCER_DUMP_VM_COMPARTMENT_MATRIX_DIAGONALS
from heccer.heccer_base import HECCER_DUMP_VM_MECHANISM_OPERATIONS
HECCER_TESTED_THINGS = 1245184
c1 = Compartment()
c1.dCm = 4.57537e-11
c1.dEm = -0.08
c1.dInitVm = -0.068
c1.dInject = 0
c1.dRa = 360502
c1.dRm = 3.58441e+08
#! /usr/bin/env python
"""
This test checks for the for the chemesis3 modules
to be present and importable.
"""
import os
import sys
import pdb
from test_library import add_package_path
add_package_path("chemesis3")
print "Importing chemesis3_base"
import chemesis3.chemesis3_base
print "Importing chemesis3"
import chemesis3
print "Done!"
#! /usr/bin/env python
"""
"""
import os
import sys
import pdb
from test_library import add_package_path
add_package_path("heccer")
from heccer.__cbi__ import PackageInfo
_package_info = PackageInfo()
version = _package_info.GetVersion()
print "%s" % version
print "Done!"