def parse_sector_stock_rack_label(cls, label):
values = _POOL_CREATION_LABELS.parse_stock_rack_label(label)
# The base class does not parse out the sector index from the rack
# role string.
rack_role, sector_idx_str = values[cls.MARKER_RACK_ROLE].split('Q')
values[cls.MARKER_RACK_ROLE] = rack_role
values[cls.MARKER_SECTOR_INDEX] = int(sector_idx_str)
return values
def parse_sector_stock_rack_label(cls, label):
values = _POOL_CREATION_LABELS.parse_stock_rack_label(label)
# The base class does not parse out the sector index from the rack
# role string.
rack_role, sector_idx_str = values[cls.MARKER_RACK_ROLE].split("Q")
values[cls.MARKER_RACK_ROLE] = rack_role
values[cls.MARKER_SECTOR_INDEX] = int(sector_idx_str)
return values
def __create_transfers(self):
# Creates a :class:`PlannedSampleDilution` for each rack position
# in a 8x12 rack shape.
self.add_debug('Create transfers ...')
self._run_and_record_error(self.volume_calculator.calculate,
'Error when trying to determine buffer volume: ',
ValueError)
buffer_volume = self.volume_calculator.get_buffer_volume()
if buffer_volume is not None:
volume = buffer_volume / VOLUME_CONVERSION_FACTOR
wl_label = LABELS.create_buffer_worklist_label(
self.iso_request_label)
wl = PlannedWorklist(wl_label,
TRANSFER_TYPES.SAMPLE_DILUTION,
get_pipetting_specs_cybio())
for rack_pos in get_positions_for_shape(RACK_SHAPE_NAMES.SHAPE_96):
psd = PlannedSampleDilution.get_entity(volume=volume,
target_position=rack_pos, diluent_info=DILUENT_INFO)
wl.planned_liquid_transfers.append(psd)
self.__worklist_series.add_worklist(self.BUFFER_WORKLIST_INDEX, wl)
def __create_transfers(self):
# Creates a :class:`PlannedSampleDilution` for each rack position
# in a 8x12 rack shape.
self.add_debug('Create transfers ...')
self._run_and_record_error(
self.volume_calculator.calculate,
'Error when trying to determine buffer volume: ', ValueError)
buffer_volume = self.volume_calculator.get_buffer_volume()
if buffer_volume is not None:
volume = buffer_volume / VOLUME_CONVERSION_FACTOR
wl_label = LABELS.create_buffer_worklist_label(
self.iso_request_label)
wl = PlannedWorklist(wl_label, TRANSFER_TYPES.SAMPLE_DILUTION,
get_pipetting_specs_cybio())
for rack_pos in get_positions_for_shape(RACK_SHAPE_NAMES.SHAPE_96):
psd = PlannedSampleDilution.get_entity(
volume=volume,
target_position=rack_pos,
diluent_info=DILUENT_INFO)
wl.planned_liquid_transfers.append(psd)
self.__worklist_series.add_worklist(self.BUFFER_WORKLIST_INDEX, wl)
def __create_isos(self):
# Creates the ISOs. At this the tool checks whether there are already
# ISOs at the ISO request. The tool add ISOs until the number of plates
# (ISO request attribute) is reached.
self.add_debug('Create ISOs ...')
current_iso_count = len(self.iso_request.isos)
new_iso_count = self.iso_request.expected_number_isos
for i in range(current_iso_count, new_iso_count):
layout_number = i + 1
iso_label = LABELS.create_iso_label(self.iso_request.label,
layout_number)
ticket_number = self.__get_ticket_number(iso_label, layout_number)
if ticket_number is None:
break
# FIXME: Using side effect of instantiation.
StockSampleCreationIso(iso_label,
self.iso_request.number_designs,
RackLayout(shape=get_96_rack_shape()),
ticket_number,
layout_number,
iso_request=self.iso_request)
self.__new_iso_counter += 1
def __create_isos(self):
# Creates the ISOs. At this the tool checks whether there are already
# ISOs at the ISO request. The tool add ISOs until the number of plates
# (ISO request attribute) is reached.
self.add_debug('Create ISOs ...')
current_iso_count = len(self.iso_request.isos)
new_iso_count = self.iso_request.expected_number_isos
for i in range(current_iso_count, new_iso_count):
layout_number = i + 1
iso_label = LABELS.create_iso_label(self.iso_request.label,
layout_number)
ticket_number = self.__get_ticket_number(iso_label, layout_number)
if ticket_number is None:
break
# FIXME: Using side effect of instantiation.
StockSampleCreationIso(iso_label,
self.iso_request.number_designs,
RackLayout(shape=get_96_rack_shape()),
ticket_number,
layout_number,
iso_request=self.iso_request)
self.__new_iso_counter += 1
def _get_job_label(self):
job_num = LABELS.get_new_job_number(self.iso_request)
return LABELS.create_job_label(self.iso_request.label, job_num)
def _get_job_label(self):
job_num = LABELS.get_new_job_number(self.iso_request)
return LABELS.create_job_label(self.iso_request.label, job_num)
