def _merge_streams(self, stream_map):
"""
All buffer streams are merged too.
"""
dilution_streams = dict()
for job_index in self.__buffer_dilution_indices:
dilution_streams[job_index] = stream_map[job_index]
del stream_map[job_index]
if len(dilution_streams) > 0:
self.__buffer_stream = merge_csv_streams(dilution_streams)
return StockTransferWriterExecutor._merge_streams(self, stream_map)
def _merge_streams(self, stream_map):
"""
All buffer streams are merged too.
"""
dilution_streams = dict()
for job_index in self.__buffer_dilution_indices:
dilution_streams[job_index] = stream_map[job_index]
del stream_map[job_index]
if len(dilution_streams) > 0:
self.__buffer_stream = merge_csv_streams(dilution_streams)
return StockTransferWriterExecutor._merge_streams(self, stream_map)
def _merge_streams(self, stream_map):
"""
All transfer jobs are merged into one file. Optimem and reagent
stream are from the merged stream map, too.
"""
self._extract_mastermix_streams(stream_map)
transfer_streams = dict()
transfer_worklist = None
for job_index, stream in stream_map.iteritems():
transfer_streams[job_index] = stream
if transfer_worklist is None:
transfer_worklist = self._transfer_jobs[job_index].planned_worklist
transfer_stream = merge_csv_streams(transfer_streams)
self._final_streams[self.FILE_SUFFIX_TRANSFER] = transfer_stream
return dict()
def _merge_streams(self, stream_map):
"""
All transfer jobs are merged into one file. Optimem and reagent
stream are from the merged stream map, too.
"""
self._extract_mastermix_streams(stream_map)
transfer_streams = dict()
transfer_worklist = None
for job_index, stream in stream_map.iteritems():
transfer_streams[job_index] = stream
if transfer_worklist is None:
transfer_worklist = self._transfer_jobs[job_index].\
planned_worklist
transfer_stream = merge_csv_streams(transfer_streams)
self._final_streams[self.FILE_SUFFIX_TRANSFER] = transfer_stream
return dict()
def _merge_streams(self, stream_map):
"""
By default, streams for the same worklist are merged.
"""
sorted_streams = dict()
for job_index, stream in stream_map.iteritems():
if job_index in self.__rack_transfer_indices:
continue
transfer_job = self._transfer_jobs[job_index]
worklist_label = transfer_job.planned_worklist.label
if sorted_streams.has_key(worklist_label):
worklist_map = sorted_streams[worklist_label]
else:
worklist_map = dict()
sorted_streams[worklist_label] = worklist_map
worklist_map[job_index] = stream
merged_streams = dict()
for worklist_label, worklist_map in sorted_streams.iteritems():
merged_stream = merge_csv_streams(worklist_map)
merged_streams[worklist_label] = merged_stream
return merged_streams
def _merge_streams(self, stream_map):
"""
By default, streams for the same worklist are merged.
"""
sorted_streams = dict()
for job_index, stream in stream_map.iteritems():
if job_index in self.__rack_transfer_indices:
continue
transfer_job = self._transfer_jobs[job_index]
worklist_label = transfer_job.planned_worklist.label
if sorted_streams.has_key(worklist_label):
worklist_map = sorted_streams[worklist_label]
else:
worklist_map = dict()
sorted_streams[worklist_label] = worklist_map
worklist_map[job_index] = stream
merged_streams = dict()
for worklist_label, worklist_map in sorted_streams.iteritems():
merged_stream = merge_csv_streams(worklist_map)
merged_streams[worklist_label] = merged_stream
return merged_streams
