print "output file also written to temp.tab.txt and temp.animation.py"
matchList = tm3.findSimilarNodes(
tmDataList,
[
"Surface Area",
"Volume",
"height",
# "mean absolute Curvature",
"mean Curvature",
"mouths",
"longest dimension",
"middle dimension",
"short dimension",
"Area of Biggest Mouth",
"Diameter of Biggest Mouth",
"mean height",
],
10000000,
1000,
50,
resCols=["Atom Name List"],
sizeColName="Volume",
sizeMin=-1.0,
sizeMax=1000000000000,
doSelfScore=False,
justNodes=dotData.treeToBestNode,
mst=True,
lineMst=False,
lineMstEnds=False,
)
# linemstends doesn't work that well so disabled for now
filenames.sort() # so coloring is consistent
for filename in filenames:
tmDataList.append(tm3.tmTreeFromFile(filename))
tm3.findSimilarNodes(
tmDataList,
[
"Surface Area",
"Volume",
"height",
"mean Curvature",
"mouths",
"longest dimension",
"middle dimension",
"short dimension",
"Area of Biggest Mouth",
"Diameter of Biggest Mouth",
"mean height",
],
100000,
20000,
1000,
resCols=["Atom Name List"],
sizeColName="Volume",
sizeMin=25,
sizeMax=2000,
calcColMeansStd=False,
alpha=alpha,
clusterOutput=True,
printThings=False,
)
