class WorkerTests(ToilTest): """Test miscellaneous units of the worker.""" def setUp(self): super(WorkerTests, self).setUp() path = self._getTestJobStorePath() self.jobStore = FileJobStore(path) self.config = Config() self.config.jobStore = 'file:%s' % path self.jobStore.initialize(self.config) self.jobNumber = 0 @travis_test def testNextChainable(self): """Make sure chainable/non-chainable jobs are identified correctly.""" def createTestJobDesc(memory, cores, disk, preemptable, checkpoint): """ Create a JobDescription with no command (representing a Job that has already run) and return the JobDescription. """ name = 'job%d' % self.jobNumber self.jobNumber += 1 descClass = CheckpointJobDescription if checkpoint else JobDescription jobDesc = descClass(requirements={ 'memory': memory, 'cores': cores, 'disk': disk, 'preemptable': preemptable }, jobName=name) # Assign an ID self.jobStore.assignID(jobDesc) # Save and return the JobDescription return self.jobStore.create(jobDesc) for successorType in ['addChild', 'addFollowOn']: # Try with the branch point at both child and follow-on stages # Identical non-checkpoint jobs should be chainable. jobDesc1 = createTestJobDesc(1, 2, 3, True, False) jobDesc2 = createTestJobDesc(1, 2, 3, True, False) getattr(jobDesc1, successorType)(jobDesc2.jobStoreID) chainable = nextChainable(jobDesc1, self.jobStore, self.config) self.assertNotEqual(chainable, None) self.assertEqual(jobDesc2.jobStoreID, chainable.jobStoreID) # Identical checkpoint jobs should not be chainable. jobDesc1 = createTestJobDesc(1, 2, 3, True, False) jobDesc2 = createTestJobDesc(1, 2, 3, True, True) getattr(jobDesc1, successorType)(jobDesc2.jobStoreID) self.assertEqual( None, nextChainable(jobDesc1, self.jobStore, self.config)) # If there is no child we should get nothing to chain. jobDesc1 = createTestJobDesc(1, 2, 3, True, False) self.assertEqual( None, nextChainable(jobDesc1, self.jobStore, self.config)) # If there are 2 or more children we should get nothing to chain. jobDesc1 = createTestJobDesc(1, 2, 3, True, False) jobDesc2 = createTestJobDesc(1, 2, 3, True, False) jobDesc3 = createTestJobDesc(1, 2, 3, True, False) getattr(jobDesc1, successorType)(jobDesc2.jobStoreID) getattr(jobDesc1, successorType)(jobDesc3.jobStoreID) self.assertEqual( None, nextChainable(jobDesc1, self.jobStore, self.config)) # If there is an increase in resource requirements we should get nothing to chain. reqs = { 'memory': 1, 'cores': 2, 'disk': 3, 'preemptable': True, 'checkpoint': False } for increased_attribute in ('memory', 'cores', 'disk'): jobDesc1 = createTestJobDesc(**reqs) reqs[increased_attribute] += 1 jobDesc2 = createTestJobDesc(**reqs) getattr(jobDesc1, successorType)(jobDesc2.jobStoreID) self.assertEqual( None, nextChainable(jobDesc1, self.jobStore, self.config)) # A change in preemptability from True to False should be disallowed. jobDesc1 = createTestJobDesc(1, 2, 3, True, False) jobDesc2 = createTestJobDesc(1, 2, 3, False, True) getattr(jobDesc1, successorType)(jobDesc2.jobStoreID) self.assertEqual( None, nextChainable(jobDesc1, self.jobStore, self.config))
class WorkerTests(ToilTest): """Test miscellaneous units of the worker.""" def setUp(self): super(WorkerTests, self).setUp() path = self._getTestJobStorePath() self.jobStore = FileJobStore(path) self.config = Config() self.config.jobStore = 'file:%s' % path self.jobStore.initialize(self.config) self.jobGraphNumber = 0 def testNextChainableJobGraph(self): """Make sure chainable/non-chainable jobs are identified correctly.""" def createJobGraph(memory, cores, disk, preemptable, checkpoint): """Create a fake-ish Job and JobGraph pair, and return the jobGraph.""" name = 'jobGraph%d' % self.jobGraphNumber self.jobGraphNumber += 1 job = Job() job.checkpoint = checkpoint with self.jobStore.writeFileStream() as (f, fileStoreID): pickle.dump(job, f, pickle.HIGHEST_PROTOCOL) command = '_toil %s fooCommand toil True' % fileStoreID jobGraph = JobGraph(command=command, memory=memory, cores=cores, disk=disk, unitName=name, jobName=name, preemptable=preemptable, jobStoreID=name, remainingRetryCount=1, predecessorNumber=1) return self.jobStore.create(jobGraph) # Identical non-checkpoint jobs should be chainable. jobGraph1 = createJobGraph(1, 2, 3, True, False) jobGraph2 = createJobGraph(1, 2, 3, True, False) jobGraph1.stack = [[jobGraph2]] self.assertEquals(jobGraph2, nextChainableJobGraph(jobGraph1, self.jobStore)) # Identical checkpoint jobs should not be chainable. jobGraph1 = createJobGraph(1, 2, 3, True, False) jobGraph2 = createJobGraph(1, 2, 3, True, True) jobGraph1.stack = [[jobGraph2]] self.assertEquals(None, nextChainableJobGraph(jobGraph1, self.jobStore)) # If there is no child we should get nothing to chain. jobGraph1 = createJobGraph(1, 2, 3, True, False) jobGraph1.stack = [] self.assertEquals(None, nextChainableJobGraph(jobGraph1, self.jobStore)) # If there are 2 or more children we should get nothing to chain. jobGraph1 = createJobGraph(1, 2, 3, True, False) jobGraph2 = createJobGraph(1, 2, 3, True, False) jobGraph3 = createJobGraph(1, 2, 3, True, False) jobGraph1.stack = [[jobGraph2, jobGraph3]] self.assertEquals(None, nextChainableJobGraph(jobGraph1, self.jobStore)) # If there is an increase in resource requirements we should get nothing to chain. reqs = { 'memory': 1, 'cores': 2, 'disk': 3, 'preemptable': True, 'checkpoint': False } for increased_attribute in ('memory', 'cores', 'disk'): jobGraph1 = createJobGraph(**reqs) reqs[increased_attribute] += 1 jobGraph2 = createJobGraph(**reqs) jobGraph1.stack = [[jobGraph2]] self.assertEquals(None, nextChainableJobGraph(jobGraph1, self.jobStore)) # A change in preemptability from True to False should be disallowed. jobGraph1 = createJobGraph(1, 2, 3, True, False) jobGraph2 = createJobGraph(1, 2, 3, False, True) jobGraph1.stack = [[jobGraph2]] self.assertEquals(None, nextChainableJobGraph(jobGraph1, self.jobStore))