def test_get_env_shell_file_paths_from_setup_environment_elem():
xml = """<action name="setup_r_environment">
<repository name="package_r_3_0_1" owner="bgruening" toolshed="toolshed.g2.bx.psu.edu" changeset_revision="1234567">
<package name="R" version="3.0.1" />
</repository>
</action>
"""
mock_app = MockApp()
action_elem = parse_xml_string( xml )
required_for_install_env_sh = '/path/to/existing.sh'
all_env_paths = [ required_for_install_env_sh ]
action_dict = {}
env_manager = EnvManager( mock_app )
r_env_sh = '/path/to/go/env.sh'
def mock_get_env_shell_file_paths( elem ):
assert elem.get( 'name' ) == "package_r_3_0_1"
return [ r_env_sh ]
with __mock_common_util_method( env_manager, "get_env_shell_file_paths", mock_get_env_shell_file_paths ):
env_manager.get_env_shell_file_paths_from_setup_environment_elem( all_env_paths, action_elem, action_dict )
## Verify old env files weren't deleted.
assert required_for_install_env_sh in all_env_paths
## Verify new ones added.
assert r_env_sh in all_env_paths
## env_shell_file_paths includes everything
assert all( [ env in action_dict[ 'env_shell_file_paths' ] for env in all_env_paths ] )
## action_shell_file_paths includes only env files defined in
## inside the setup_ action element.
assert required_for_install_env_sh not in action_dict[ 'action_shell_file_paths' ]
assert r_env_sh in action_dict[ 'action_shell_file_paths' ]
def test_get_env_shell_file_paths_from_setup_environment_elem():
xml = """<action name="setup_r_environment">
<repository name="package_r_3_0_1" owner="bgruening" toolshed="toolshed.g2.bx.psu.edu" changeset_revision="1234567">
<package name="R" version="3.0.1" />
</repository>
<repository name="package_zlib_1_2_8" owner="iuc" toolshed="toolshed.g2.bx.psu.edu" changeset_revision="7654321">
<package name="zlib" version="1.2.8" />
</repository>
</action>
"""
mock_app = MockApp()
action_elem = parse_xml_string(xml)
required_for_install_env_sh = '/path/to/existing.sh'
all_env_paths = [required_for_install_env_sh]
action_dict = {}
env_manager = EnvManager(mock_app)
r_env_sh = '/path/to/go/env.sh'
def mock_get_env_shell_file_paths(elem):
assert elem.get('name') in ["package_r_3_0_1", "package_zlib_1_2_8"]
return [r_env_sh]
with __mock_common_util_method(env_manager, "get_env_shell_file_paths",
mock_get_env_shell_file_paths):
env_manager.get_env_shell_file_paths_from_setup_environment_elem(
all_env_paths, action_elem, action_dict)
# Verify old env files weren't deleted.
assert required_for_install_env_sh in all_env_paths
# Verify new ones added.
assert r_env_sh in all_env_paths
# env_shell_file_paths includes everything
assert all([
env in action_dict['env_shell_file_paths'] for env in all_env_paths
])
# for every given repository there should be one env
# file + the required_for_install_env_sh file
assert len(action_dict['env_shell_file_paths']) == 3
# action_shell_file_paths includes only env files defined
# inside the setup_ action element.
assert required_for_install_env_sh in action_dict[
'action_shell_file_paths']
assert r_env_sh in action_dict['action_shell_file_paths']
