def forward(self, input: Tensor, target: Tensor) -> Tensor:
dist_euc = LA.norm(input - target, dim=1)
norm_input = LA.norm(input, dim=1)
norm_target = LA.norm(target, dim=1)
dist_hype = torch.acosh(1 + 2 * dist_euc**2 / ((1 - norm_input**2) *
(1 - norm_target**2)))
loss = torch.mean(dist_hype)
return loss
def hyperboloid_distance(x, y, include_arcosh=False):
"""
The distance is with the arccosh, but if we have to compute cosh on top of it, it is better to default without it
"""
q_func = lambda x: -x[:-1].pow(2).sum() + x[-1].pow(2).sum()
d = (q_func(x + y) - q_func(x) - q_func(y)) / 2
if include_arcosh:
d = torch.acosh(d)
return d
def poincare_distance(pred, gt):
'''
Calculate pair-wise poincare distance between each row in two input tensors
See equation (1) in this paper for mathematical expression:
https://arxiv.org/abs/1705.08039
'''
(N_pred, D) = pred.shape
(N_gt, D) = gt.shape
a = (1 - square_norm(pred)).view(N_pred, 1)
b = (1 - square_norm(gt)).view(1, N_gt)
return torch.acosh(1 + 2 * pairwise_distances(pred, gt) / torch.matmul(a, b))
def forward(self, output, target):
"""
Computes the phylogenetic distance loss
Parameters
----------
output
the output of a network
target
the square root of the patristic distances
"""
# compute hyperbolic distance
output = output.double()
s = torch.sqrt(1 + torch.sum(output**2, dim=1))
B = torch.outer(s, s)
B -= output.matmul(output.T)
B[(B - 1.0).abs() < self.tol] = 1.0
dist = torch.acosh(B)
# compute mean absolute error
n = output.shape[0]
loss = (dist - target).abs().tril(diagonal=-1).sum() / (n * (n - 1))
return loss
def pointwise_ops(self):
a = torch.randn(4)
b = torch.randn(4)
t = torch.tensor([-1, -2, 3], dtype=torch.int8)
r = torch.tensor([0, 1, 10, 0], dtype=torch.int8)
t = torch.tensor([-1, -2, 3], dtype=torch.int8)
s = torch.tensor([4, 0, 1, 0], dtype=torch.int8)
f = torch.zeros(3)
g = torch.tensor([-1, 0, 1])
w = torch.tensor([0.3810, 1.2774, -0.2972, -0.3719, 0.4637])
return (
torch.abs(torch.tensor([-1, -2, 3])),
torch.absolute(torch.tensor([-1, -2, 3])),
torch.acos(a),
torch.arccos(a),
torch.acosh(a.uniform_(1.0, 2.0)),
torch.add(a, 20),
torch.add(a, torch.randn(4, 1), alpha=10),
torch.addcdiv(torch.randn(1, 3),
torch.randn(3, 1),
torch.randn(1, 3),
value=0.1),
torch.addcmul(torch.randn(1, 3),
torch.randn(3, 1),
torch.randn(1, 3),
value=0.1),
torch.angle(a),
torch.asin(a),
torch.arcsin(a),
torch.asinh(a),
torch.arcsinh(a),
torch.atan(a),
torch.arctan(a),
torch.atanh(a.uniform_(-1.0, 1.0)),
torch.arctanh(a.uniform_(-1.0, 1.0)),
torch.atan2(a, a),
torch.bitwise_not(t),
torch.bitwise_and(t, torch.tensor([1, 0, 3], dtype=torch.int8)),
torch.bitwise_or(t, torch.tensor([1, 0, 3], dtype=torch.int8)),
torch.bitwise_xor(t, torch.tensor([1, 0, 3], dtype=torch.int8)),
torch.ceil(a),
torch.clamp(a, min=-0.5, max=0.5),
torch.clamp(a, min=0.5),
torch.clamp(a, max=0.5),
torch.clip(a, min=-0.5, max=0.5),
torch.conj(a),
torch.copysign(a, 1),
torch.copysign(a, b),
torch.cos(a),
torch.cosh(a),
torch.deg2rad(
torch.tensor([[180.0, -180.0], [360.0, -360.0], [90.0,
-90.0]])),
torch.div(a, b),
torch.divide(a, b, rounding_mode="trunc"),
torch.divide(a, b, rounding_mode="floor"),
torch.digamma(torch.tensor([1.0, 0.5])),
torch.erf(torch.tensor([0.0, -1.0, 10.0])),
torch.erfc(torch.tensor([0.0, -1.0, 10.0])),
torch.erfinv(torch.tensor([0.0, 0.5, -1.0])),
torch.exp(torch.tensor([0.0, math.log(2.0)])),
torch.exp2(torch.tensor([0.0, math.log(2.0), 3.0, 4.0])),
torch.expm1(torch.tensor([0.0, math.log(2.0)])),
torch.fake_quantize_per_channel_affine(
torch.randn(2, 2, 2),
(torch.randn(2) + 1) * 0.05,
torch.zeros(2),
1,
0,
255,
),
torch.fake_quantize_per_tensor_affine(a, 0.1, 0, 0, 255),
torch.float_power(torch.randint(10, (4, )), 2),
torch.float_power(torch.arange(1, 5), torch.tensor([2, -3, 4,
-5])),
torch.floor(a),
# torch.floor_divide(torch.tensor([4.0, 3.0]), torch.tensor([2.0, 2.0])),
# torch.floor_divide(torch.tensor([4.0, 3.0]), 1.4),
torch.fmod(torch.tensor([-3, -2, -1, 1, 2, 3]), 2),
torch.fmod(torch.tensor([1, 2, 3, 4, 5]), 1.5),
torch.frac(torch.tensor([1.0, 2.5, -3.2])),
torch.randn(4, dtype=torch.cfloat).imag,
torch.ldexp(torch.tensor([1.0]), torch.tensor([1])),
torch.ldexp(torch.tensor([1.0]), torch.tensor([1, 2, 3, 4])),
torch.lerp(torch.arange(1.0, 5.0),
torch.empty(4).fill_(10), 0.5),
torch.lerp(
torch.arange(1.0, 5.0),
torch.empty(4).fill_(10),
torch.full_like(torch.arange(1.0, 5.0), 0.5),
),
torch.lgamma(torch.arange(0.5, 2, 0.5)),
torch.log(torch.arange(5) + 10),
torch.log10(torch.rand(5)),
torch.log1p(torch.randn(5)),
torch.log2(torch.rand(5)),
torch.logaddexp(torch.tensor([-1.0]), torch.tensor([-1, -2, -3])),
torch.logaddexp(torch.tensor([-100.0, -200.0, -300.0]),
torch.tensor([-1, -2, -3])),
torch.logaddexp(torch.tensor([1.0, 2000.0, 30000.0]),
torch.tensor([-1, -2, -3])),
torch.logaddexp2(torch.tensor([-1.0]), torch.tensor([-1, -2, -3])),
torch.logaddexp2(torch.tensor([-100.0, -200.0, -300.0]),
torch.tensor([-1, -2, -3])),
torch.logaddexp2(torch.tensor([1.0, 2000.0, 30000.0]),
torch.tensor([-1, -2, -3])),
torch.logical_and(r, s),
torch.logical_and(r.double(), s.double()),
torch.logical_and(r.double(), s),
torch.logical_and(r, s, out=torch.empty(4, dtype=torch.bool)),
torch.logical_not(torch.tensor([0, 1, -10], dtype=torch.int8)),
torch.logical_not(
torch.tensor([0.0, 1.5, -10.0], dtype=torch.double)),
torch.logical_not(
torch.tensor([0.0, 1.0, -10.0], dtype=torch.double),
out=torch.empty(3, dtype=torch.int16),
),
torch.logical_or(r, s),
torch.logical_or(r.double(), s.double()),
torch.logical_or(r.double(), s),
torch.logical_or(r, s, out=torch.empty(4, dtype=torch.bool)),
torch.logical_xor(r, s),
torch.logical_xor(r.double(), s.double()),
torch.logical_xor(r.double(), s),
torch.logical_xor(r, s, out=torch.empty(4, dtype=torch.bool)),
torch.logit(torch.rand(5), eps=1e-6),
torch.hypot(torch.tensor([4.0]), torch.tensor([3.0, 4.0, 5.0])),
torch.i0(torch.arange(5, dtype=torch.float32)),
torch.igamma(a, b),
torch.igammac(a, b),
torch.mul(torch.randn(3), 100),
torch.multiply(torch.randn(4, 1), torch.randn(1, 4)),
torch.mvlgamma(torch.empty(2, 3).uniform_(1.0, 2.0), 2),
torch.tensor([float("nan"),
float("inf"), -float("inf"), 3.14]),
torch.nan_to_num(w),
torch.nan_to_num(w, nan=2.0),
torch.nan_to_num(w, nan=2.0, posinf=1.0),
torch.neg(torch.randn(5)),
# torch.nextafter(torch.tensor([1, 2]), torch.tensor([2, 1])) == torch.tensor([eps + 1, 2 - eps]),
torch.polygamma(1, torch.tensor([1.0, 0.5])),
torch.polygamma(2, torch.tensor([1.0, 0.5])),
torch.polygamma(3, torch.tensor([1.0, 0.5])),
torch.polygamma(4, torch.tensor([1.0, 0.5])),
torch.pow(a, 2),
torch.pow(torch.arange(1.0, 5.0), torch.arange(1.0, 5.0)),
torch.rad2deg(
torch.tensor([[3.142, -3.142], [6.283, -6.283],
[1.570, -1.570]])),
torch.randn(4, dtype=torch.cfloat).real,
torch.reciprocal(a),
torch.remainder(torch.tensor([-3.0, -2.0]), 2),
torch.remainder(torch.tensor([1, 2, 3, 4, 5]), 1.5),
torch.round(a),
torch.rsqrt(a),
torch.sigmoid(a),
torch.sign(torch.tensor([0.7, -1.2, 0.0, 2.3])),
torch.sgn(a),
torch.signbit(torch.tensor([0.7, -1.2, 0.0, 2.3])),
torch.sin(a),
torch.sinc(a),
torch.sinh(a),
torch.sqrt(a),
torch.square(a),
torch.sub(torch.tensor((1, 2)), torch.tensor((0, 1)), alpha=2),
torch.tan(a),
torch.tanh(a),
torch.trunc(a),
torch.xlogy(f, g),
torch.xlogy(f, g),
torch.xlogy(f, 4),
torch.xlogy(2, g),
)
def acosh(x):
return _torch.acosh(x)
'asin':
lambda x: torch.asin(x),
'acos':
lambda x: torch.acos(x),
'atan':
lambda x: torch.atan(x),
'sinh':
lambda x: torch.sinh(x),
'cosh':
lambda x: torch.cosh(x),
'tanh':
lambda x: torch.tanh(x),
'asinh':
lambda x: torch.asinh(x),
'acosh':
lambda x: torch.acosh(x),
'atanh':
lambda x: torch.atanh(x),
'tile':
lambda input, repeats: input.repeat(*repeats),
'pad':
nnef_pad,
'cast':
nnef_cast,
'gather':
nnef_gather,
'any_reduce':
lambda input, axes: _nnef_generic_reduce(input, axes=axes, f=torch.any),
'all_reduce':
lambda input, axes: _nnef_generic_reduce(input, axes=axes, f=torch.all),
}
import math
a = torch.randn(4)
b = torch.randn(4)
t = torch.tensor([-1, -2, 3], dtype=torch.int8)
# abs/absolute
torch.abs(torch.tensor([-1, -2, 3]))
torch.absolute(torch.tensor([-1, -2, 3]))
# acos/arccos
torch.acos(a)
torch.arccos(a)
# acosh/arccosh
torch.acosh(a.uniform_(1, 2))
# add
torch.add(a, 20)
torch.add(a, torch.randn(4, 1), alpha=10)
# addcdiv
torch.addcdiv(torch.randn(1, 3),
torch.randn(3, 1),
torch.randn(1, 3),
value=0.1)
# addcmul
torch.addcmul(torch.randn(1, 3),
torch.randn(3, 1),
torch.randn(1, 3),
