def importNewPairs(self,
pairs, # csv containing information about new pairs to process
paths # absolute paths to new genome fasta files referenced in pairs
):
print "Importing new pairs from: %s" % pairs
print "Import full contig file paths from: %s" % paths
# get an interface to the file
II = ImportInterface(self.dbFileName)
# import paths first
with open(paths, "r") as paths_fh:
II.importGenomes(paths_fh)
# import genomes next
with open(pairs, "r") as pairs_fh:
II.importPairs(pairs_fh)
