class SimulationBase(CrowdDynamicsObject):
# TODO: timezone information: tzutc? json serialization.
timestamp = Instance(
datetime,
help='Timestamp of current utc time. Defaults to time when object was '
'first created.')
metadata = Instance(klass=OrderedDict,
args=(),
help='Simulation metadata as dictionary.')
data = Instance(
klass=OrderedDict,
args=(),
help="Generated simulation data that is shared between logic nodes. "
"This should be data that can be updated and should be saved on "
"every iteration.")
exit_condition = Instance(Callable, allow_none=True, help='')
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.metadata['name'] = self.name
self.metadata['timestamp'] = str(self.timestamp)
@default('timestamp')
def _default_timestamp(self):
return datetime.now(tz=tzutc())
@property
def name_with_timestamp(self):
"""Name with timestamp."""
return '_'.join((self.name, str(self.timestamp).replace(' ', '_')))
def update(self):
raise NotImplementedError
def run(self):
"""Updates simulation until exit condition is met (returns True)."""
#while (self.data['target_0'] + self.data['target_1'] < self.data['n_agents']*1.00):
while (self.data['target_0'] + self.data['target_1'] +
self.data['target_2'] + self.data['target_3'] <
self.data['n_agents'] * 1.00):
#if (self.data['time_tot'] > 80):
#print(self.agents.array[np.nonzero(~self.agents.array['target_reached'])])
#print(self.data['target_0'] + self.data['target_1'] + self.data['target_2'] +
# self.data['target_3'] + self.data['target_4'] + self.data['target_5'])
#sys.stdout.flush()
#print(self.data['time_tot'])
#sys.stdout.flush()
self.update()
class GuiCommunication(LogicNode):
"""Communication between the GUI and simulation."""
queue = Instance(klass=type(Queue()), allow_none=True)
def update(self, *args, **kwargs):
self.queue.put(
Message(agents=np.copy(self.simulation.agents.array),
data=self.simulation.data))
class AgentGroup(HasTraits):
"""Group of agents
Examples:
>>> group = AgentGroup(
>>> size=10,
>>> agent_type=Circular,
>>> attributes=...,
>>> )
"""
agent_type = Type(AgentType,
allow_none=True,
help='AgentType for generating agent from attributes.')
size = Int(
default_value=0,
help='Size of the agent group. Optional is attributes are instance of '
'collection')
attributes = Union(
(Instance(Collection), Instance(Generator), Instance(Callable)),
allow_none=True,
help='Attributes of the chosen agent type.')
members = List(Instance(AgentType), help='')
@observe('size', 'agent_type', 'attributes')
def _observe_members(self, change):
if self.size > 0 and self.attributes is not None and self.agent_type is not None:
if isinstance(self.attributes, Collection):
self.members = [self.agent_type(**a) for a in self.attributes]
elif isinstance(self.attributes, Generator):
self.members = [
self.agent_type(**next(self.attributes))
for _ in range(self.size)
]
elif isinstance(self.attributes, Callable):
self.members = [
self.agent_type(**self.attributes())
for _ in range(self.size)
]
else:
raise TraitError
class LoggingConfigurable(Configurable):
"""A parent class for Configurables that log.
Subclasses have a log trait, and the default behavior
is to get the logger from the currently running Application.
"""
log = Instance('logging.Logger')
def _log_default(self):
from traitlets import log
return log.get_logger()
class SimulationBase(CrowdDynamicsObject):
# TODO: timezone information: tzutc? json serialization.
timestamp = Instance(
datetime,
help='Timestamp of current utc time. Defaults to time when object was '
'first created.')
metadata = Instance(klass=OrderedDict,
args=(),
help='Simulation metadata as dictionary.')
data = Instance(
klass=OrderedDict,
args=(),
help="Generated simulation data that is shared between logic nodes. "
"This should be data that can be updated and should be saved on "
"every iteration.")
exit_condition = Instance(Callable, allow_none=True, help='')
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.metadata['name'] = self.name
self.metadata['timestamp'] = str(self.timestamp)
@default('timestamp')
def _default_timestamp(self):
return datetime.now(tz=tzutc())
@property
def name_with_timestamp(self):
"""Name with timestamp."""
return '_'.join((self.name, str(self.timestamp).replace(' ', '_')))
def update(self):
raise NotImplementedError
def run(self):
"""Updates simulation until exit condition is met (returns True)."""
while self.exit_condition is None or not self.exit_condition(self):
self.update()
class HydraKernelManager(AsyncKernelManager):
client_factory = HydraKernelClient
@default("kernel_spec_manager")
def _default_kernel_spec_manager(self):
return HydraKernelSpecManager(parent=self)
binding = Instance(Binding)
# TODO: refresh kernel spec manager (??) if the binding connection changes.
# Not sure if that is really necessary.
@property
def kernel_name(self):
"""Override kernel name to refer to subkernel"""
return self.binding.kernel
class Configurable(HasTraits):
config = Instance(Config, (), {})
parent = Instance('traitlets.config.configurable.Configurable',
allow_none=True)
def __init__(self, **kwargs):
"""Create a configurable given a config config.
Parameters
----------
config : Config
If this is empty, default values are used. If config is a
:class:`Config` instance, it will be used to configure the
instance.
parent : Configurable instance, optional
The parent Configurable instance of this object.
Notes
-----
Subclasses of Configurable must call the :meth:`__init__` method of
:class:`Configurable` *before* doing anything else and using
:func:`super`::
class MyConfigurable(Configurable):
def __init__(self, config=None):
super(MyConfigurable, self).__init__(config=config)
# Then any other code you need to finish initialization.
This ensures that instances will be configured properly.
"""
parent = kwargs.pop('parent', None)
if parent is not None:
# config is implied from parent
if kwargs.get('config', None) is None:
kwargs['config'] = parent.config
self.parent = parent
config = kwargs.pop('config', None)
# load kwarg traits, other than config
super(Configurable, self).__init__(**kwargs)
# load config
if config is not None:
# We used to deepcopy, but for now we are trying to just save
# by reference. This *could* have side effects as all components
# will share config. In fact, I did find such a side effect in
# _config_changed below. If a config attribute value was a mutable type
# all instances of a component were getting the same copy, effectively
# making that a class attribute.
# self.config = deepcopy(config)
self.config = config
else:
# allow _config_default to return something
self._load_config(self.config)
# Ensure explicit kwargs are applied after loading config.
# This is usually redundant, but ensures config doesn't override
# explicitly assigned values.
for key, value in kwargs.items():
setattr(self, key, value)
#-------------------------------------------------------------------------
# Static trait notifiations
#-------------------------------------------------------------------------
@classmethod
def section_names(cls):
"""return section names as a list"""
return [
c.__name__ for c in reversed(cls.__mro__)
if issubclass(c, Configurable) and issubclass(cls, c)
]
def _find_my_config(self, cfg):
"""extract my config from a global Config object
will construct a Config object of only the config values that apply to me
based on my mro(), as well as those of my parent(s) if they exist.
If I am Bar and my parent is Foo, and their parent is Tim,
this will return merge following config sections, in this order::
[Bar, Foo.bar, Tim.Foo.Bar]
With the last item being the highest priority.
"""
cfgs = [cfg]
if self.parent:
cfgs.append(self.parent._find_my_config(cfg))
my_config = Config()
for c in cfgs:
for sname in self.section_names():
# Don't do a blind getattr as that would cause the config to
# dynamically create the section with name Class.__name__.
if c._has_section(sname):
my_config.merge(c[sname])
return my_config
def _load_config(self, cfg, section_names=None, traits=None):
"""load traits from a Config object"""
if traits is None:
traits = self.traits(config=True)
if section_names is None:
section_names = self.section_names()
my_config = self._find_my_config(cfg)
# hold trait notifications until after all config has been loaded
with self.hold_trait_notifications():
for name, config_value in my_config.items():
if name in traits:
if isinstance(config_value, LazyConfigValue):
# ConfigValue is a wrapper for using append / update on containers
# without having to copy the initial value
initial = getattr(self, name)
config_value = config_value.get_value(initial)
# We have to do a deepcopy here if we don't deepcopy the entire
# config object. If we don't, a mutable config_value will be
# shared by all instances, effectively making it a class attribute.
setattr(self, name, deepcopy(config_value))
elif not _is_section_key(name) and not isinstance(
config_value, Config):
from difflib import get_close_matches
if isinstance(self, LoggingConfigurable):
warn = self.log.warning
else:
warn = lambda msg: warnings.warn(msg, stacklevel=9)
matches = get_close_matches(name, traits)
msg = u"Config option `{option}` not recognized by `{klass}`.".format(
option=name, klass=self.__class__.__name__)
if len(matches) == 1:
msg += u" Did you mean `{matches}`?".format(
matches=matches[0])
elif len(matches) >= 1:
msg += " Did you mean one of: `{matches}`?".format(
matches=', '.join(sorted(matches)))
warn(msg)
@observe('config')
@observe_compat
def _config_changed(self, change):
"""Update all the class traits having ``config=True`` in metadata.
For any class trait with a ``config`` metadata attribute that is
``True``, we update the trait with the value of the corresponding
config entry.
"""
# Get all traits with a config metadata entry that is True
traits = self.traits(config=True)
# We auto-load config section for this class as well as any parent
# classes that are Configurable subclasses. This starts with Configurable
# and works down the mro loading the config for each section.
section_names = self.section_names()
self._load_config(change.new,
traits=traits,
section_names=section_names)
def update_config(self, config):
"""Update config and load the new values"""
# load config
self._load_config(config)
# merge it into self.config
self.config.merge(config)
# TODO: trigger change event if/when dict-update change events take place
# DO NOT trigger full trait-change
@classmethod
def class_get_help(cls, inst=None):
"""Get the help string for this class in ReST format.
If `inst` is given, it's current trait values will be used in place of
class defaults.
"""
assert inst is None or isinstance(inst, cls)
final_help = []
final_help.append(u'%s options' % cls.__name__)
final_help.append(len(final_help[0]) * u'-')
for k, v in sorted(cls.class_traits(config=True).items()):
help = cls.class_get_trait_help(v, inst)
final_help.append(help)
return '\n'.join(final_help)
@classmethod
def class_get_trait_help(cls, trait, inst=None):
"""Get the help string for a single trait.
If `inst` is given, it's current trait values will be used in place of
the class default.
"""
assert inst is None or isinstance(inst, cls)
lines = []
header = "--%s.%s=<%s>" % (cls.__name__, trait.name,
trait.__class__.__name__)
lines.append(header)
if inst is not None:
lines.append(indent('Current: %r' % getattr(inst, trait.name), 4))
else:
try:
dvr = trait.default_value_repr()
except Exception:
dvr = None # ignore defaults we can't construct
if dvr is not None:
if len(dvr) > 64:
dvr = dvr[:61] + '...'
lines.append(indent('Default: %s' % dvr, 4))
if 'Enum' in trait.__class__.__name__:
# include Enum choices
lines.append(indent('Choices: %r' % (trait.values, )))
help = trait.help
if help != '':
help = '\n'.join(wrap_paragraphs(help, 76))
lines.append(indent(help, 4))
return '\n'.join(lines)
@classmethod
def class_print_help(cls, inst=None):
"""Get the help string for a single trait and print it."""
print(cls.class_get_help(inst))
@classmethod
def class_config_section(cls):
"""Get the config class config section"""
def c(s):
"""return a commented, wrapped block."""
s = '\n\n'.join(wrap_paragraphs(s, 78))
return '# ' + s.replace('\n', '\n# ')
# section header
breaker = '#' + '-' * 78
s = "# %s configuration" % cls.__name__
lines = [breaker, s, breaker, '']
# get the description trait
desc = cls.class_traits().get('description')
if desc:
desc = desc.default_value
else:
# no description trait, use __doc__
desc = getattr(cls, '__doc__', '')
if desc:
lines.append(c(desc))
lines.append('')
for name, trait in sorted(cls.class_own_traits(config=True).items()):
lines.append(c(trait.help))
lines.append('# c.%s.%s = %s' %
(cls.__name__, name, trait.default_value_repr()))
lines.append('')
return '\n'.join(lines)
@classmethod
def class_config_rst_doc(cls):
"""Generate rST documentation for this class' config options.
Excludes traits defined on parent classes.
"""
lines = []
classname = cls.__name__
for k, trait in sorted(cls.class_own_traits(config=True).items()):
ttype = trait.__class__.__name__
termline = classname + '.' + trait.name
# Choices or type
if 'Enum' in ttype:
# include Enum choices
termline += ' : ' + '|'.join(repr(x) for x in trait.values)
else:
termline += ' : ' + ttype
lines.append(termline)
# Default value
try:
dvr = trait.default_value_repr()
except Exception:
dvr = None # ignore defaults we can't construct
if dvr is not None:
if len(dvr) > 64:
dvr = dvr[:61] + '...'
# Double up backslashes, so they get to the rendered docs
dvr = dvr.replace('\\n', '\\\\n')
lines.append(' Default: ``%s``' % dvr)
lines.append('')
help = trait.help or 'No description'
lines.append(indent(dedent(help), 4))
# Blank line
lines.append('')
return '\n'.join(lines)
class Application(SingletonConfigurable):
"""A singleton application with full configuration support."""
# The name of the application, will usually match the name of the command
# line application
name = Unicode('application')
# The description of the application that is printed at the beginning
# of the help.
description = Unicode('This is an application.')
# default section descriptions
option_description = Unicode(option_description)
keyvalue_description = Unicode(keyvalue_description)
subcommand_description = Unicode(subcommand_description)
python_config_loader_class = PyFileConfigLoader
json_config_loader_class = JSONFileConfigLoader
# The usage and example string that goes at the end of the help string.
examples = Unicode()
# A sequence of Configurable subclasses whose config=True attributes will
# be exposed at the command line.
classes = []
def _classes_inc_parents(self, classes=None):
"""Iterate through configurable classes, including configurable parents
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Children should always be after parents, and each class should only be
yielded once.
"""
if classes is None:
classes = self.classes
seen = set()
for c in classes:
# We want to sort parents before children, so we reverse the MRO
for parent in reversed(c.mro()):
if issubclass(parent, Configurable) and (parent not in seen):
seen.add(parent)
yield parent
# The version string of this application.
version = Unicode('0.0')
# the argv used to initialize the application
argv = List()
# Whether failing to load config files should prevent startup
raise_config_file_errors = Bool(
TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR)
# The log level for the application
log_level = Enum(
(0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL'),
default_value=logging.WARN,
help="Set the log level by value or name.").tag(config=True)
@observe('log_level')
@observe_compat
def _log_level_changed(self, change):
"""Adjust the log level when log_level is set."""
new = change.new
if isinstance(new, str):
new = getattr(logging, new)
self.log_level = new
self.log.setLevel(new)
_log_formatter_cls = LevelFormatter
log_datefmt = Unicode(
"%Y-%m-%d %H:%M:%S",
help="The date format used by logging formatters for %(asctime)s").tag(
config=True)
log_format = Unicode(
"[%(name)s]%(highlevel)s %(message)s",
help="The Logging format template",
).tag(config=True)
@observe('log_datefmt', 'log_format')
@observe_compat
def _log_format_changed(self, change):
"""Change the log formatter when log_format is set."""
_log_handler = self._get_log_handler()
if not _log_handler:
warnings.warn(
"No Handler found on {self.log}, setting log_format will have no effect",
RuntimeWarning,
)
return
_log_formatter = self._log_formatter_cls(fmt=self.log_format,
datefmt=self.log_datefmt)
_log_handler.setFormatter(_log_formatter)
@default('log')
def _log_default(self):
"""Start logging for this application.
The default is to log to stderr using a StreamHandler, if no default
handler already exists. The log level starts at logging.WARN, but this
can be adjusted by setting the ``log_level`` attribute.
"""
log = logging.getLogger(self.__class__.__name__)
log.setLevel(self.log_level)
log.propagate = False
_log = log # copied from Logger.hasHandlers() (new in Python 3.2)
while _log:
if _log.handlers:
return log
if not _log.propagate:
break
else:
_log = _log.parent
if sys.executable and sys.executable.endswith('pythonw.exe'):
# this should really go to a file, but file-logging is only
# hooked up in parallel applications
_log_handler = logging.StreamHandler(open(os.devnull, 'w'))
else:
_log_handler = logging.StreamHandler()
_log_formatter = self._log_formatter_cls(fmt=self.log_format,
datefmt=self.log_datefmt)
_log_handler.setFormatter(_log_formatter)
log.addHandler(_log_handler)
return log
#: the alias map for configurables
#: Keys might strings or tuples for additional options; single-letter alias accessed like `-v`.
#: Values might be like "Class.trait" strings of two-tuples: (Class.trait, help-text).
aliases = {'log-level': 'Application.log_level'}
# flags for loading Configurables or store_const style flags
# flags are loaded from this dict by '--key' flags
# this must be a dict of two-tuples, the first element being the Config/dict
# and the second being the help string for the flag
flags = {
'debug': ({
'Application': {
'log_level': logging.DEBUG,
},
}, "Set log-level to debug, for the most verbose logging."),
'show-config': ({
'Application': {
'show_config': True,
},
}, "Show the application's configuration (human-readable format)"),
'show-config-json': ({
'Application': {
'show_config_json': True,
},
}, "Show the application's configuration (json format)"),
}
# subcommands for launching other applications
# if this is not empty, this will be a parent Application
# this must be a dict of two-tuples,
# the first element being the application class/import string
# and the second being the help string for the subcommand
subcommands = Dict()
# parse_command_line will initialize a subapp, if requested
subapp = Instance('traitlets.config.application.Application',
allow_none=True)
# extra command-line arguments that don't set config values
extra_args = List(Unicode())
cli_config = Instance(
Config, (), {},
help="""The subset of our configuration that came from the command-line
We re-load this configuration after loading config files,
to ensure that it maintains highest priority.
""")
_loaded_config_files = List()
show_config = Bool(
help="Instead of starting the Application, dump configuration to stdout"
).tag(config=True)
show_config_json = Bool(
help=
"Instead of starting the Application, dump configuration to stdout (as JSON)"
).tag(config=True)
@observe('show_config_json')
def _show_config_json_changed(self, change):
self.show_config = change.new
@observe('show_config')
def _show_config_changed(self, change):
if change.new:
self._save_start = self.start
self.start = self.start_show_config
def __init__(self, **kwargs):
SingletonConfigurable.__init__(self, **kwargs)
# Ensure my class is in self.classes, so my attributes appear in command line
# options and config files.
cls = self.__class__
if cls not in self.classes:
if self.classes is cls.classes:
# class attr, assign instead of insert
self.classes = [cls] + self.classes
else:
self.classes.insert(0, self.__class__)
@observe('config')
@observe_compat
def _config_changed(self, change):
super(Application, self)._config_changed(change)
self.log.debug('Config changed: %r', change.new)
@catch_config_error
def initialize(self, argv=None):
"""Do the basic steps to configure me.
Override in subclasses.
"""
self.parse_command_line(argv)
def start(self):
"""Start the app mainloop.
Override in subclasses.
"""
if self.subapp is not None:
return self.subapp.start()
def start_show_config(self):
"""start function used when show_config is True"""
config = self.config.copy()
# exclude show_config flags from displayed config
for cls in self.__class__.mro():
if cls.__name__ in config:
cls_config = config[cls.__name__]
cls_config.pop('show_config', None)
cls_config.pop('show_config_json', None)
if self.show_config_json:
json.dump(config,
sys.stdout,
indent=1,
sort_keys=True,
default=repr)
# add trailing newline
sys.stdout.write('\n')
return
if self._loaded_config_files:
print("Loaded config files:")
for f in self._loaded_config_files:
print(' ' + f)
print()
for classname in sorted(config):
class_config = config[classname]
if not class_config:
continue
print(classname)
pformat_kwargs = dict(indent=4, compact=True)
for traitname in sorted(class_config):
value = class_config[traitname]
print(' .{} = {}'.format(
traitname,
pprint.pformat(value, **pformat_kwargs),
))
def print_alias_help(self):
"""Print the alias parts of the help."""
print('\n'.join(self.emit_alias_help()))
def emit_alias_help(self):
"""Yield the lines for alias part of the help."""
if not self.aliases:
return
classdict = {}
for cls in self.classes:
# include all parents (up to, but excluding Configurable) in available names
for c in cls.mro()[:-3]:
classdict[c.__name__] = c
for alias, longname in self.aliases.items():
try:
if isinstance(longname, tuple):
longname, fhelp = longname
else:
fhelp = None
classname, traitname = longname.split('.', 1)
cls = classdict[classname]
trait = cls.class_traits(config=True)[traitname]
fhelp = cls.class_get_trait_help(trait,
helptext=fhelp).splitlines()
if not isinstance(alias, tuple):
alias = (alias, )
alias = sorted(alias, key=len)
alias = ', '.join(
('--%s' if len(m) > 1 else '-%s') % m for m in alias)
# reformat first line
fhelp[0] = fhelp[0].replace('--' + longname, alias)
for l in fhelp:
yield l
yield indent("Equivalent to: [--%s]" % longname)
except Exception as ex:
self.log.error(
'Failed collecting help-message for alias %r, due to: %s',
alias, ex)
raise
def print_flag_help(self):
"""Print the flag part of the help."""
print('\n'.join(self.emit_flag_help()))
def emit_flag_help(self):
"""Yield the lines for the flag part of the help."""
if not self.flags:
return
for flags, (cfg, fhelp) in self.flags.items():
try:
if not isinstance(flags, tuple):
flags = (flags, )
flags = sorted(flags, key=len)
flags = ', '.join(
('--%s' if len(m) > 1 else '-%s') % m for m in flags)
yield flags
yield indent(dedent(fhelp.strip()))
cfg_list = ' '.join('--%s.%s=%s' % (clname, prop, val)
for clname, props_dict in cfg.items()
for prop, val in props_dict.items())
cfg_txt = "Equivalent to: [%s]" % cfg_list
yield indent(dedent(cfg_txt))
except Exception as ex:
self.log.error(
'Failed collecting help-message for flag %r, due to: %s',
flags, ex)
raise
def print_options(self):
"""Print the options part of the help."""
print('\n'.join(self.emit_options_help()))
def emit_options_help(self):
"""Yield the lines for the options part of the help."""
if not self.flags and not self.aliases:
return
header = 'Options'
yield header
yield '=' * len(header)
for p in wrap_paragraphs(self.option_description):
yield p
yield ''
for l in self.emit_flag_help():
yield l
for l in self.emit_alias_help():
yield l
yield ''
def print_subcommands(self):
"""Print the subcommand part of the help."""
print('\n'.join(self.emit_subcommands_help()))
def emit_subcommands_help(self):
"""Yield the lines for the subcommand part of the help."""
if not self.subcommands:
return
header = "Subcommands"
yield header
yield '=' * len(header)
for p in wrap_paragraphs(
self.subcommand_description.format(app=self.name)):
yield p
yield ''
for subc, (cls, help) in self.subcommands.items():
yield subc
if help:
yield indent(dedent(help.strip()))
yield ''
def emit_help_epilogue(self, classes):
"""Yield the very bottom lines of the help message.
If classes=False (the default), print `--help-all` msg.
"""
if not classes:
yield "To see all available configurables, use `--help-all`."
yield ''
def print_help(self, classes=False):
"""Print the help for each Configurable class in self.classes.
If classes=False (the default), only flags and aliases are printed.
"""
print('\n'.join(self.emit_help(classes=classes)))
def emit_help(self, classes=False):
"""Yield the help-lines for each Configurable class in self.classes.
If classes=False (the default), only flags and aliases are printed.
"""
for l in self.emit_description():
yield l
for l in self.emit_subcommands_help():
yield l
for l in self.emit_options_help():
yield l
if classes:
help_classes = self._classes_with_config_traits()
if help_classes:
yield "Class options"
yield "============="
for p in wrap_paragraphs(self.keyvalue_description):
yield p
yield ''
for cls in help_classes:
yield cls.class_get_help()
yield ''
for l in self.emit_examples():
yield l
for l in self.emit_help_epilogue(classes):
yield l
def document_config_options(self):
"""Generate rST format documentation for the config options this application
Returns a multiline string.
"""
return '\n'.join(c.class_config_rst_doc()
for c in self._classes_inc_parents())
def print_description(self):
"""Print the application description."""
print('\n'.join(self.emit_description()))
def emit_description(self):
"""Yield lines with the application description."""
for p in wrap_paragraphs(self.description or self.__doc__):
yield p
yield ''
def print_examples(self):
"""Print usage and examples (see `emit_examples()`). """
print('\n'.join(self.emit_examples()))
def emit_examples(self):
"""Yield lines with the usage and examples.
This usage string goes at the end of the command line help string
and should contain examples of the application's usage.
"""
if self.examples:
yield "Examples"
yield "--------"
yield ''
yield indent(dedent(self.examples.strip()))
yield ''
def print_version(self):
"""Print the version string."""
print(self.version)
@catch_config_error
def initialize_subcommand(self, subc, argv=None):
"""Initialize a subcommand with argv."""
subapp, _ = self.subcommands.get(subc)
if isinstance(subapp, str):
subapp = import_item(subapp)
## Cannot issubclass() on a non-type (SOhttp://stackoverflow.com/questions/8692430)
if isinstance(subapp, type) and issubclass(subapp, Application):
# Clear existing instances before...
self.__class__.clear_instance()
# instantiating subapp...
self.subapp = subapp.instance(parent=self)
elif callable(subapp):
# or ask factory to create it...
self.subapp = subapp(self)
else:
raise AssertionError("Invalid mappings for subcommand '%s'!" %
subc)
# ... and finally initialize subapp.
self.subapp.initialize(argv)
def flatten_flags(self):
"""Flatten flags and aliases for loaders, so cl-args override as expected.
This prevents issues such as an alias pointing to InteractiveShell,
but a config file setting the same trait in TerminalInteraciveShell
getting inappropriate priority over the command-line arg.
Also, loaders expect ``(key: longname)`` and not ````key: (longname, help)`` items.
Only aliases with exactly one descendent in the class list
will be promoted.
"""
# build a tree of classes in our list that inherit from a particular
# it will be a dict by parent classname of classes in our list
# that are descendents
mro_tree = defaultdict(list)
for cls in self.classes:
clsname = cls.__name__
for parent in cls.mro()[1:-3]:
# exclude cls itself and Configurable,HasTraits,object
mro_tree[parent.__name__].append(clsname)
# flatten aliases, which have the form:
# { 'alias' : 'Class.trait' }
aliases = {}
for alias, longname in self.aliases.items():
if isinstance(longname, tuple):
longname, _ = longname
cls, trait = longname.split('.', 1)
children = mro_tree[cls]
if len(children) == 1:
# exactly one descendent, promote alias
cls = children[0]
if not isinstance(aliases, tuple):
alias = (alias, )
for al in alias:
aliases[al] = '.'.join([cls, trait])
# flatten flags, which are of the form:
# { 'key' : ({'Cls' : {'trait' : value}}, 'help')}
flags = {}
for key, (flagdict, help) in self.flags.items():
newflag = {}
for cls, subdict in flagdict.items():
children = mro_tree[cls]
# exactly one descendent, promote flag section
if len(children) == 1:
cls = children[0]
if cls in newflag:
newflag[cls].update(subdict)
else:
newflag[cls] = subdict
if not isinstance(key, tuple):
key = (key, )
for k in key:
flags[k] = (newflag, help)
return flags, aliases
def _create_loader(self, argv, aliases, flags, classes):
return KVArgParseConfigLoader(argv,
aliases,
flags,
classes=classes,
log=self.log)
@catch_config_error
def parse_command_line(self, argv=None):
"""Parse the command line arguments."""
assert not isinstance(argv, str)
argv = sys.argv[1:] if argv is None else argv
self.argv = [cast_unicode(arg) for arg in argv]
if argv and argv[0] == 'help':
# turn `ipython help notebook` into `ipython notebook -h`
argv = argv[1:] + ['-h']
if self.subcommands and len(argv) > 0:
# we have subcommands, and one may have been specified
subc, subargv = argv[0], argv[1:]
if re.match(r'^\w(\-?\w)*$', subc) and subc in self.subcommands:
# it's a subcommand, and *not* a flag or class parameter
return self.initialize_subcommand(subc, subargv)
# Arguments after a '--' argument are for the script IPython may be
# about to run, not IPython iteslf. For arguments parsed here (help and
# version), we want to only search the arguments up to the first
# occurrence of '--', which we're calling interpreted_argv.
try:
interpreted_argv = argv[:argv.index('--')]
except ValueError:
interpreted_argv = argv
if any(x in interpreted_argv for x in ('-h', '--help-all', '--help')):
self.print_help('--help-all' in interpreted_argv)
self.exit(0)
if '--version' in interpreted_argv or '-V' in interpreted_argv:
self.print_version()
self.exit(0)
# flatten flags&aliases, so cl-args get appropriate priority:
flags, aliases = self.flatten_flags()
classes = tuple(self._classes_with_config_traits())
loader = self._create_loader(argv, aliases, flags, classes=classes)
try:
self.cli_config = deepcopy(loader.load_config())
except SystemExit:
# traitlets 5: no longer print help output on error
# help output is huge, and comes after the error
raise
self.update_config(self.cli_config)
# store unparsed args in extra_args
self.extra_args = loader.extra_args
@classmethod
def _load_config_files(cls,
basefilename,
path=None,
log=None,
raise_config_file_errors=False):
"""Load config files (py,json) by filename and path.
yield each config object in turn.
"""
if not isinstance(path, list):
path = [path]
for path in path[::-1]:
# path list is in descending priority order, so load files backwards:
pyloader = cls.python_config_loader_class(basefilename + '.py',
path=path,
log=log)
if log:
log.debug("Looking for %s in %s", basefilename, path
or os.getcwd())
jsonloader = cls.json_config_loader_class(basefilename + '.json',
path=path,
log=log)
loaded = []
filenames = []
for loader in [pyloader, jsonloader]:
config = None
try:
config = loader.load_config()
except ConfigFileNotFound:
pass
except Exception:
# try to get the full filename, but it will be empty in the
# unlikely event that the error raised before filefind finished
filename = loader.full_filename or basefilename
# problem while running the file
if raise_config_file_errors:
raise
if log:
log.error("Exception while loading config file %s",
filename,
exc_info=True)
else:
if log:
log.debug("Loaded config file: %s",
loader.full_filename)
if config:
for filename, earlier_config in zip(filenames, loaded):
collisions = earlier_config.collisions(config)
if collisions and log:
log.warning(
"Collisions detected in {0} and {1} config files."
" {1} has higher priority: {2}".format(
filename,
loader.full_filename,
json.dumps(collisions, indent=2),
))
yield (config, loader.full_filename)
loaded.append(config)
filenames.append(loader.full_filename)
@property
def loaded_config_files(self):
"""Currently loaded configuration files"""
return self._loaded_config_files[:]
@catch_config_error
def load_config_file(self, filename, path=None):
"""Load config files by filename and path."""
filename, ext = os.path.splitext(filename)
new_config = Config()
for (config, filename) in self._load_config_files(
filename,
path=path,
log=self.log,
raise_config_file_errors=self.raise_config_file_errors,
):
new_config.merge(config)
if filename not in self._loaded_config_files: # only add to list of loaded files if not previously loaded
self._loaded_config_files.append(filename)
# add self.cli_config to preserve CLI config priority
new_config.merge(self.cli_config)
self.update_config(new_config)
def _classes_with_config_traits(self, classes=None):
"""
Yields only classes with configurable traits, and their subclasses.
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Thus, produced sample config-file will contain all classes
on which a trait-value may be overridden:
- either on the class owning the trait,
- or on its subclasses, even if those subclasses do not define
any traits themselves.
"""
if classes is None:
classes = self.classes
cls_to_config = OrderedDict(
(cls, bool(cls.class_own_traits(config=True)))
for cls in self._classes_inc_parents(classes))
def is_any_parent_included(cls):
return any(b in cls_to_config and cls_to_config[b]
for b in cls.__bases__)
## Mark "empty" classes for inclusion if their parents own-traits,
# and loop until no more classes gets marked.
#
while True:
to_incl_orig = cls_to_config.copy()
cls_to_config = OrderedDict(
(cls, inc_yes or is_any_parent_included(cls))
for cls, inc_yes in cls_to_config.items())
if cls_to_config == to_incl_orig:
break
for cl, inc_yes in cls_to_config.items():
if inc_yes:
yield cl
def generate_config_file(self, classes=None):
"""generate default config file from Configurables"""
lines = ["# Configuration file for %s." % self.name]
lines.append('')
classes = self.classes if classes is None else classes
config_classes = list(self._classes_with_config_traits(classes))
for cls in config_classes:
lines.append(cls.class_config_section(config_classes))
return '\n'.join(lines)
def exit(self, exit_status=0):
self.log.debug("Exiting application: %s" % self.name)
sys.exit(exit_status)
@classmethod
def launch_instance(cls, argv=None, **kwargs):
"""Launch a global instance of this Application
If a global instance already exists, this reinitializes and starts it
"""
app = cls.instance(**kwargs)
app.initialize(argv)
app.start()
class Application(SingletonConfigurable):
"""A singleton application with full configuration support."""
# The name of the application, will usually match the name of the command
# line application
name = Unicode(u'application')
# The description of the application that is printed at the beginning
# of the help.
description = Unicode(u'This is an application.')
# default section descriptions
option_description = Unicode(option_description)
keyvalue_description = Unicode(keyvalue_description)
subcommand_description = Unicode(subcommand_description)
python_config_loader_class = PyFileConfigLoader
json_config_loader_class = JSONFileConfigLoader
# The usage and example string that goes at the end of the help string.
examples = Unicode()
# A sequence of Configurable subclasses whose config=True attributes will
# be exposed at the command line.
classes = []
@property
def _help_classes(self):
"""Define `App.help_classes` if CLI classes should differ from config file classes"""
return getattr(self, 'help_classes', self.classes)
@property
def _config_classes(self):
"""Define `App.config_classes` if config file classes should differ from CLI classes."""
return getattr(self, 'config_classes', self.classes)
# The version string of this application.
version = Unicode(u'0.0')
# the argv used to initialize the application
argv = List()
# The log level for the application
log_level = Enum((0,10,20,30,40,50,'DEBUG','INFO','WARN','ERROR','CRITICAL'),
default_value=logging.WARN,
config=True,
help="Set the log level by value or name.")
def _log_level_changed(self, name, old, new):
"""Adjust the log level when log_level is set."""
if isinstance(new, string_types):
new = getattr(logging, new)
self.log_level = new
self.log.setLevel(new)
_log_formatter_cls = LevelFormatter
log_datefmt = Unicode("%Y-%m-%d %H:%M:%S", config=True,
help="The date format used by logging formatters for %(asctime)s"
)
def _log_datefmt_changed(self, name, old, new):
self._log_format_changed('log_format', self.log_format, self.log_format)
log_format = Unicode("[%(name)s]%(highlevel)s %(message)s", config=True,
help="The Logging format template",
)
def _log_format_changed(self, name, old, new):
"""Change the log formatter when log_format is set."""
_log_handler = self.log.handlers[0]
_log_formatter = self._log_formatter_cls(fmt=new, datefmt=self.log_datefmt)
_log_handler.setFormatter(_log_formatter)
log = Instance(logging.Logger)
def _log_default(self):
"""Start logging for this application.
The default is to log to stderr using a StreamHandler, if no default
handler already exists. The log level starts at logging.WARN, but this
can be adjusted by setting the ``log_level`` attribute.
"""
log = logging.getLogger(self.__class__.__name__)
log.setLevel(self.log_level)
log.propagate = False
_log = log # copied from Logger.hasHandlers() (new in Python 3.2)
while _log:
if _log.handlers:
return log
if not _log.propagate:
break
else:
_log = _log.parent
if sys.executable.endswith('pythonw.exe'):
# this should really go to a file, but file-logging is only
# hooked up in parallel applications
_log_handler = logging.StreamHandler(open(os.devnull, 'w'))
else:
_log_handler = logging.StreamHandler()
_log_formatter = self._log_formatter_cls(fmt=self.log_format, datefmt=self.log_datefmt)
_log_handler.setFormatter(_log_formatter)
log.addHandler(_log_handler)
return log
# the alias map for configurables
aliases = Dict({'log-level' : 'Application.log_level'})
# flags for loading Configurables or store_const style flags
# flags are loaded from this dict by '--key' flags
# this must be a dict of two-tuples, the first element being the Config/dict
# and the second being the help string for the flag
flags = Dict()
def _flags_changed(self, name, old, new):
"""ensure flags dict is valid"""
for key,value in iteritems(new):
assert len(value) == 2, "Bad flag: %r:%s"%(key,value)
assert isinstance(value[0], (dict, Config)), "Bad flag: %r:%s"%(key,value)
assert isinstance(value[1], string_types), "Bad flag: %r:%s"%(key,value)
# subcommands for launching other applications
# if this is not empty, this will be a parent Application
# this must be a dict of two-tuples,
# the first element being the application class/import string
# and the second being the help string for the subcommand
subcommands = Dict()
# parse_command_line will initialize a subapp, if requested
subapp = Instance('traitlets.config.application.Application', allow_none=True)
# extra command-line arguments that don't set config values
extra_args = List(Unicode)
def __init__(self, **kwargs):
SingletonConfigurable.__init__(self, **kwargs)
# Ensure my class is in self.classes, so my attributes appear in command line
# options and config files.
if self.__class__ not in self.classes:
self.classes.insert(0, self.__class__)
def _config_changed(self, name, old, new):
SingletonConfigurable._config_changed(self, name, old, new)
self.log.debug('Config changed:')
self.log.debug(repr(new))
@catch_config_error
def initialize(self, argv=None):
"""Do the basic steps to configure me.
Override in subclasses.
"""
self.parse_command_line(argv)
def start(self):
"""Start the app mainloop.
Override in subclasses.
"""
if self.subapp is not None:
return self.subapp.start()
def print_alias_help(self):
"""Print the alias part of the help."""
if not self.aliases:
return
lines = []
classdict = {}
for cls in self._help_classes:
# include all parents (up to, but excluding Configurable) in available names
for c in cls.mro()[:-3]:
classdict[c.__name__] = c
for alias, longname in iteritems(self.aliases):
classname, traitname = longname.split('.',1)
cls = classdict[classname]
trait = cls.class_traits(config=True)[traitname]
help = cls.class_get_trait_help(trait).splitlines()
# reformat first line
help[0] = help[0].replace(longname, alias) + ' (%s)'%longname
if len(alias) == 1:
help[0] = help[0].replace('--%s='%alias, '-%s '%alias)
lines.extend(help)
# lines.append('')
print(os.linesep.join(lines))
def print_flag_help(self):
"""Print the flag part of the help."""
if not self.flags:
return
lines = []
for m, (cfg,help) in iteritems(self.flags):
prefix = '--' if len(m) > 1 else '-'
lines.append(prefix+m)
lines.append(indent(dedent(help.strip())))
# lines.append('')
print(os.linesep.join(lines))
def print_options(self):
if not self.flags and not self.aliases:
return
lines = ['Options']
lines.append('-'*len(lines[0]))
lines.append('')
for p in wrap_paragraphs(self.option_description):
lines.append(p)
lines.append('')
print(os.linesep.join(lines))
self.print_flag_help()
self.print_alias_help()
print()
def print_subcommands(self):
"""Print the subcommand part of the help."""
if not self.subcommands:
return
lines = ["Subcommands"]
lines.append('-'*len(lines[0]))
lines.append('')
for p in wrap_paragraphs(self.subcommand_description.format(
app=self.name)):
lines.append(p)
lines.append('')
for subc, (cls, help) in iteritems(self.subcommands):
lines.append(subc)
if help:
lines.append(indent(dedent(help.strip())))
lines.append('')
print(os.linesep.join(lines))
def print_help(self, classes=False):
"""Print the help for each Configurable class in self.classes.
If classes=False (the default), only flags and aliases are printed.
"""
self.print_description()
self.print_subcommands()
self.print_options()
if classes:
help_classes = self._help_classes
if help_classes:
print("Class parameters")
print("----------------")
print()
for p in wrap_paragraphs(self.keyvalue_description):
print(p)
print()
for cls in help_classes:
cls.class_print_help()
print()
else:
print("To see all available configurables, use `--help-all`")
print()
self.print_examples()
def print_description(self):
"""Print the application description."""
for p in wrap_paragraphs(self.description):
print(p)
print()
def print_examples(self):
"""Print usage and examples.
This usage string goes at the end of the command line help string
and should contain examples of the application's usage.
"""
if self.examples:
print("Examples")
print("--------")
print()
print(indent(dedent(self.examples.strip())))
print()
def print_version(self):
"""Print the version string."""
print(self.version)
def update_config(self, config):
"""Fire the traits events when the config is updated."""
# Save a copy of the current config.
newconfig = deepcopy(self.config)
# Merge the new config into the current one.
newconfig.merge(config)
# Save the combined config as self.config, which triggers the traits
# events.
self.config = newconfig
@catch_config_error
def initialize_subcommand(self, subc, argv=None):
"""Initialize a subcommand with argv."""
subapp,help = self.subcommands.get(subc)
if isinstance(subapp, string_types):
subapp = import_item(subapp)
# clear existing instances
self.__class__.clear_instance()
# instantiate
self.subapp = subapp.instance(config=self.config)
# and initialize subapp
self.subapp.initialize(argv)
def flatten_flags(self):
"""flatten flags and aliases, so cl-args override as expected.
This prevents issues such as an alias pointing to InteractiveShell,
but a config file setting the same trait in TerminalInteraciveShell
getting inappropriate priority over the command-line arg.
Only aliases with exactly one descendent in the class list
will be promoted.
"""
# build a tree of classes in our list that inherit from a particular
# it will be a dict by parent classname of classes in our list
# that are descendents
mro_tree = defaultdict(list)
for cls in self._help_classes:
clsname = cls.__name__
for parent in cls.mro()[1:-3]:
# exclude cls itself and Configurable,HasTraits,object
mro_tree[parent.__name__].append(clsname)
# flatten aliases, which have the form:
# { 'alias' : 'Class.trait' }
aliases = {}
for alias, cls_trait in iteritems(self.aliases):
cls,trait = cls_trait.split('.',1)
children = mro_tree[cls]
if len(children) == 1:
# exactly one descendent, promote alias
cls = children[0]
aliases[alias] = '.'.join([cls,trait])
# flatten flags, which are of the form:
# { 'key' : ({'Cls' : {'trait' : value}}, 'help')}
flags = {}
for key, (flagdict, help) in iteritems(self.flags):
newflag = {}
for cls, subdict in iteritems(flagdict):
children = mro_tree[cls]
# exactly one descendent, promote flag section
if len(children) == 1:
cls = children[0]
newflag[cls] = subdict
flags[key] = (newflag, help)
return flags, aliases
@catch_config_error
def parse_command_line(self, argv=None):
"""Parse the command line arguments."""
argv = sys.argv[1:] if argv is None else argv
self.argv = [ py3compat.cast_unicode(arg) for arg in argv ]
if argv and argv[0] == 'help':
# turn `ipython help notebook` into `ipython notebook -h`
argv = argv[1:] + ['-h']
if self.subcommands and len(argv) > 0:
# we have subcommands, and one may have been specified
subc, subargv = argv[0], argv[1:]
if re.match(r'^\w(\-?\w)*$', subc) and subc in self.subcommands:
# it's a subcommand, and *not* a flag or class parameter
return self.initialize_subcommand(subc, subargv)
# Arguments after a '--' argument are for the script IPython may be
# about to run, not IPython iteslf. For arguments parsed here (help and
# version), we want to only search the arguments up to the first
# occurrence of '--', which we're calling interpreted_argv.
try:
interpreted_argv = argv[:argv.index('--')]
except ValueError:
interpreted_argv = argv
if any(x in interpreted_argv for x in ('-h', '--help-all', '--help')):
self.print_help('--help-all' in interpreted_argv)
self.exit(0)
if '--version' in interpreted_argv or '-V' in interpreted_argv:
self.print_version()
self.exit(0)
# flatten flags&aliases, so cl-args get appropriate priority:
flags,aliases = self.flatten_flags()
loader = KVArgParseConfigLoader(argv=argv, aliases=aliases,
flags=flags, log=self.log)
config = loader.load_config()
self.update_config(config)
# store unparsed args in extra_args
self.extra_args = loader.extra_args
@classmethod
def _load_config_files(cls, basefilename, path=None, log=None):
"""Load config files (py,json) by filename and path.
yield each config object in turn.
"""
if not isinstance(path, list):
path = [path]
for path in path[::-1]:
# path list is in descending priority order, so load files backwards:
pyloader = cls.python_config_loader_class(basefilename+'.py', path=path, log=log)
jsonloader = cls.json_config_loader_class(basefilename+'.json', path=path, log=log)
config = None
for loader in [pyloader, jsonloader]:
try:
config = loader.load_config()
except ConfigFileNotFound:
pass
except Exception:
# try to get the full filename, but it will be empty in the
# unlikely event that the error raised before filefind finished
filename = loader.full_filename or basefilename
# problem while running the file
if log:
log.error("Exception while loading config file %s",
filename, exc_info=True)
else:
if log:
log.debug("Loaded config file: %s", loader.full_filename)
if config:
yield config
raise StopIteration
@catch_config_error
def load_config_file(self, filename, path=None):
"""Load config files by filename and path."""
filename, ext = os.path.splitext(filename)
loaded = []
for config in self._load_config_files(filename, path=path, log=self.log):
loaded.append(config)
self.update_config(config)
if len(loaded) > 1:
collisions = loaded[0].collisions(loaded[1])
if collisions:
self.log.warn("Collisions detected in {0}.py and {0}.json config files."
" {0}.json has higher priority: {1}".format(
filename, json.dumps(collisions, indent=2),
))
def generate_config_file(self):
"""generate default config file from Configurables"""
lines = ["# Configuration file for %s." % self.name]
lines.append('')
for cls in self._config_classes:
lines.append(cls.class_config_section())
return '\n'.join(lines)
def exit(self, exit_status=0):
self.log.debug("Exiting application: %s" % self.name)
sys.exit(exit_status)
@classmethod
def launch_instance(cls, argv=None, **kwargs):
"""Launch a global instance of this Application
If a global instance already exists, this reinitializes and starts it
"""
app = cls.instance(**kwargs)
app.initialize(argv)
app.start()
class BodyType(Body):
body_type = Unicode(help='Selected body type')
body_types = Instance(ConfigObj,
help='Mapping of body type names to values')
# Ratios of radii for shoulders and torso
ratio_rt = Float(default_value=0,
min=0,
max=1,
help='Ratio between total radius and torso radius')
ratio_rs = Float(default_value=0,
min=0,
max=1,
help='Ratio between total radius and shoulder radius')
ratio_ts = Float(
default_value=0,
min=0,
max=1,
help='Ratio between total radius and distance from torso to shoulder')
# Scales for settings values from truncated normal distribution
# TODO: Distributions class as instance traits
radius_mean = Float(default_value=0, min=0)
radius_scale = Float(default_value=0, min=0)
target_velocity_mean = Float(default_value=0, min=0)
target_velocity_scale = Float(default_value=0, min=0)
mass_mean = Float(default_value=0, min=0)
mass_scale = Float(default_value=0, min=0)
@staticmethod
def _truncnorm(mean, abs_scale):
"""Individual value from truncnorm"""
return np.asscalar(truncnorm(-3.0, 3.0, loc=mean, abs_scale=abs_scale))
@default('body_types')
def _default_body_types(self):
return load_config(BODY_TYPES_CFG, BODY_TYPES_CFG_SPEC)
@observe('body_type')
def _observe_body_type(self, change):
if change['old'] == '':
new = change['new']
for k, v in self.body_types[new].items():
setattr(self, k, v)
else:
raise TraitError('Body type can only be set once.')
@observe('radius_mean', 'radius_scale')
def _observe_radius_truncnorm(self, change):
if self.radius == 0 and self.radius_mean > 0 and self.radius_scale > 0:
self.radius = self._truncnorm(self.radius_mean, self.radius_scale)
@observe('radius', 'ratio_rt', 'ratio_rs', 'ratio_ts')
def _observe_radius(self, change):
"""Set torso radius if ratio_rt changes and radius is defined or if
radius changes and ratio_rt is defined."""
name = change['name']
if name == 'radius':
if self.ratio_rt > 0:
self.r_t = self.ratio_rt * self.radius
if self.ratio_rs > 0:
self.r_s = self.ratio_rs * self.radius
if self.ratio_ts > 0:
self.r_ts = self.ratio_ts * self.radius
elif self.radius > 0:
if name == 'ratio_rt':
self.r_t = self.ratio_rt * self.radius
elif name == 'ratio_rs':
self.r_s = self.ratio_rs * self.radius
elif name == 'ratio_ts':
self.r_ts = self.ratio_ts * self.radius
@observe('mass_mean', 'mass_scale')
def _observe_mass_truncnorm(self, change):
if self.mass == 0 and self.mass_mean > 0 and self.mass_scale > 0:
self.mass = self._truncnorm(self.mass_mean, self.mass_scale)
@observe('target_velocity_mean', 'target_velocity_scale')
def _observe_target_velocity_truncnorm(self, change):
if self.target_velocity == 0 and self.target_velocity_mean > 0 and self.target_velocity_scale > 0:
self.target_velocity = self._truncnorm(self.target_velocity_mean,
self.target_velocity_scale)
@observe('mass', 'radius')
def _observe_inertia_rot(self, change):
if self.inertia_rot == 0 and self.mass > 0 and self.radius > 0:
inertia = 4.0 * np.pi
mass = 80.0
radius = 0.27
self.inertia_rot = inertia * (self.mass / mass) * (self.radius /
radius)**2
class Configurable(HasTraits):
config = Instance(Config, (), {})
parent = Instance("traitlets.config.configurable.Configurable",
allow_none=True)
def __init__(self, **kwargs):
"""Create a configurable given a config config.
Parameters
----------
config : Config
If this is empty, default values are used. If config is a
:class:`Config` instance, it will be used to configure the
instance.
parent : Configurable instance, optional
The parent Configurable instance of this object.
Notes
-----
Subclasses of Configurable must call the :meth:`__init__` method of
:class:`Configurable` *before* doing anything else and using
:func:`super`::
class MyConfigurable(Configurable):
def __init__(self, config=None):
super(MyConfigurable, self).__init__(config=config)
# Then any other code you need to finish initialization.
This ensures that instances will be configured properly.
"""
parent = kwargs.pop("parent", None)
if parent is not None:
# config is implied from parent
if kwargs.get("config", None) is None:
kwargs["config"] = parent.config
self.parent = parent
config = kwargs.pop("config", None)
# load kwarg traits, other than config
super().__init__(**kwargs)
# record traits set by config
config_override_names = set()
def notice_config_override(change):
"""Record traits set by both config and kwargs.
They will need to be overridden again after loading config.
"""
if change.name in kwargs:
config_override_names.add(change.name)
self.observe(notice_config_override)
# load config
if config is not None:
# We used to deepcopy, but for now we are trying to just save
# by reference. This *could* have side effects as all components
# will share config. In fact, I did find such a side effect in
# _config_changed below. If a config attribute value was a mutable type
# all instances of a component were getting the same copy, effectively
# making that a class attribute.
# self.config = deepcopy(config)
self.config = config
else:
# allow _config_default to return something
self._load_config(self.config)
self.unobserve(notice_config_override)
for name in config_override_names:
setattr(self, name, kwargs[name])
# -------------------------------------------------------------------------
# Static trait notifiations
# -------------------------------------------------------------------------
@classmethod
def section_names(cls):
"""return section names as a list"""
return [
c.__name__ for c in reversed(cls.__mro__)
if issubclass(c, Configurable) and issubclass(cls, c)
]
def _find_my_config(self, cfg):
"""extract my config from a global Config object
will construct a Config object of only the config values that apply to me
based on my mro(), as well as those of my parent(s) if they exist.
If I am Bar and my parent is Foo, and their parent is Tim,
this will return merge following config sections, in this order::
[Bar, Foo.Bar, Tim.Foo.Bar]
With the last item being the highest priority.
"""
cfgs = [cfg]
if self.parent:
cfgs.append(self.parent._find_my_config(cfg))
my_config = Config()
for c in cfgs:
for sname in self.section_names():
# Don't do a blind getattr as that would cause the config to
# dynamically create the section with name Class.__name__.
if c._has_section(sname):
my_config.merge(c[sname])
return my_config
def _load_config(self, cfg, section_names=None, traits=None):
"""load traits from a Config object"""
if traits is None:
traits = self.traits(config=True)
if section_names is None:
section_names = self.section_names()
my_config = self._find_my_config(cfg)
# hold trait notifications until after all config has been loaded
with self.hold_trait_notifications():
for name, config_value in my_config.items():
if name in traits:
if isinstance(config_value, LazyConfigValue):
# ConfigValue is a wrapper for using append / update on containers
# without having to copy the initial value
initial = getattr(self, name)
config_value = config_value.get_value(initial)
elif isinstance(config_value, DeferredConfig):
# DeferredConfig tends to come from CLI/environment variables
config_value = config_value.get_value(traits[name])
# We have to do a deepcopy here if we don't deepcopy the entire
# config object. If we don't, a mutable config_value will be
# shared by all instances, effectively making it a class attribute.
setattr(self, name, deepcopy(config_value))
elif not _is_section_key(name) and not isinstance(
config_value, Config):
from difflib import get_close_matches
if isinstance(self, LoggingConfigurable):
warn = self.log.warning
else:
warn = lambda msg: warnings.warn(msg, stacklevel=9
) # noqa[E371]
matches = get_close_matches(name, traits)
msg = "Config option `{option}` not recognized by `{klass}`.".format(
option=name, klass=self.__class__.__name__)
if len(matches) == 1:
msg += f" Did you mean `{matches[0]}`?"
elif len(matches) >= 1:
msg += " Did you mean one of: `{matches}`?".format(
matches=", ".join(sorted(matches)))
warn(msg)
@observe("config")
@observe_compat
def _config_changed(self, change):
"""Update all the class traits having ``config=True`` in metadata.
For any class trait with a ``config`` metadata attribute that is
``True``, we update the trait with the value of the corresponding
config entry.
"""
# Get all traits with a config metadata entry that is True
traits = self.traits(config=True)
# We auto-load config section for this class as well as any parent
# classes that are Configurable subclasses. This starts with Configurable
# and works down the mro loading the config for each section.
section_names = self.section_names()
self._load_config(change.new,
traits=traits,
section_names=section_names)
def update_config(self, config):
"""Update config and load the new values"""
# traitlets prior to 4.2 created a copy of self.config in order to trigger change events.
# Some projects (IPython < 5) relied upon one side effect of this,
# that self.config prior to update_config was not modified in-place.
# For backward-compatibility, we must ensure that self.config
# is a new object and not modified in-place,
# but config consumers should not rely on this behavior.
self.config = deepcopy(self.config)
# load config
self._load_config(config)
# merge it into self.config
self.config.merge(config)
# TODO: trigger change event if/when dict-update change events take place
# DO NOT trigger full trait-change
@classmethod
def class_get_help(cls, inst=None):
"""Get the help string for this class in ReST format.
If `inst` is given, it's current trait values will be used in place of
class defaults.
"""
assert inst is None or isinstance(inst, cls)
final_help = []
base_classes = ", ".join(p.__name__ for p in cls.__bases__)
final_help.append(f"{cls.__name__}({base_classes}) options")
final_help.append(len(final_help[0]) * "-")
for _, v in sorted(cls.class_traits(config=True).items()):
help = cls.class_get_trait_help(v, inst)
final_help.append(help)
return "\n".join(final_help)
@classmethod
def class_get_trait_help(cls, trait, inst=None, helptext=None):
"""Get the helptext string for a single trait.
:param inst:
If given, it's current trait values will be used in place of
the class default.
:param helptext:
If not given, uses the `help` attribute of the current trait.
"""
assert inst is None or isinstance(inst, cls)
lines = []
header = f"--{cls.__name__}.{trait.name}"
if isinstance(trait, (Container, Dict)):
multiplicity = trait.metadata.get("multiplicity", "append")
if isinstance(trait, Dict):
sample_value = "<key-1>=<value-1>"
else:
sample_value = "<%s-item-1>" % trait.__class__.__name__.lower()
if multiplicity == "append":
header = f"{header}={sample_value}..."
else:
header = f"{header} {sample_value}..."
else:
header = f"{header}=<{trait.__class__.__name__}>"
# header = "--%s.%s=<%s>" % (cls.__name__, trait.name, trait.__class__.__name__)
lines.append(header)
if helptext is None:
helptext = trait.help
if helptext != "":
helptext = "\n".join(wrap_paragraphs(helptext, 76))
lines.append(indent(helptext))
if "Enum" in trait.__class__.__name__:
# include Enum choices
lines.append(indent("Choices: %s" % trait.info()))
if inst is not None:
lines.append(indent(f"Current: {getattr(inst, trait.name)!r}"))
else:
try:
dvr = trait.default_value_repr()
except Exception:
dvr = None # ignore defaults we can't construct
if dvr is not None:
if len(dvr) > 64:
dvr = dvr[:61] + "..."
lines.append(indent("Default: %s" % dvr))
return "\n".join(lines)
@classmethod
def class_print_help(cls, inst=None):
"""Get the help string for a single trait and print it."""
print(cls.class_get_help(inst))
@classmethod
def _defining_class(cls, trait, classes):
"""Get the class that defines a trait
For reducing redundant help output in config files.
Returns the current class if:
- the trait is defined on this class, or
- the class where it is defined would not be in the config file
Parameters
----------
trait : Trait
The trait to look for
classes : list
The list of other classes to consider for redundancy.
Will return `cls` even if it is not defined on `cls`
if the defining class is not in `classes`.
"""
defining_cls = cls
for parent in cls.mro():
if (issubclass(parent, Configurable) and parent in classes
and parent.class_own_traits(config=True).get(
trait.name, None) is trait):
defining_cls = parent
return defining_cls
@classmethod
def class_config_section(cls, classes=None):
"""Get the config section for this class.
Parameters
----------
classes : list, optional
The list of other classes in the config file.
Used to reduce redundant information.
"""
def c(s):
"""return a commented, wrapped block."""
s = "\n\n".join(wrap_paragraphs(s, 78))
return "## " + s.replace("\n", "\n# ")
# section header
breaker = "#" + "-" * 78
parent_classes = ", ".join(p.__name__ for p in cls.__bases__
if issubclass(p, Configurable))
s = f"# {cls.__name__}({parent_classes}) configuration"
lines = [breaker, s, breaker]
# get the description trait
desc = cls.class_traits().get("description")
if desc:
desc = desc.default_value
if not desc:
# no description from trait, use __doc__
desc = getattr(cls, "__doc__", "")
if desc:
lines.append(c(desc))
lines.append("")
for name, trait in sorted(cls.class_traits(config=True).items()):
default_repr = trait.default_value_repr()
if classes:
defining_class = cls._defining_class(trait, classes)
else:
defining_class = cls
if defining_class is cls:
# cls owns the trait, show full help
if trait.help:
lines.append(c(trait.help))
if "Enum" in type(trait).__name__:
# include Enum choices
lines.append("# Choices: %s" % trait.info())
lines.append("# Default: %s" % default_repr)
else:
# Trait appears multiple times and isn't defined here.
# Truncate help to first line + "See also Original.trait"
if trait.help:
lines.append(c(trait.help.split("\n", 1)[0]))
lines.append(f"# See also: {defining_class.__name__}.{name}")
lines.append(f"# c.{cls.__name__}.{name} = {default_repr}")
lines.append("")
return "\n".join(lines)
@classmethod
def class_config_rst_doc(cls):
"""Generate rST documentation for this class' config options.
Excludes traits defined on parent classes.
"""
lines = []
classname = cls.__name__
for _, trait in sorted(cls.class_traits(config=True).items()):
ttype = trait.__class__.__name__
termline = classname + "." + trait.name
# Choices or type
if "Enum" in ttype:
# include Enum choices
termline += " : " + trait.info_rst()
else:
termline += " : " + ttype
lines.append(termline)
# Default value
try:
dvr = trait.default_value_repr()
except Exception:
dvr = None # ignore defaults we can't construct
if dvr is not None:
if len(dvr) > 64:
dvr = dvr[:61] + "..."
# Double up backslashes, so they get to the rendered docs
dvr = dvr.replace("\\n", "\\\\n")
lines.append(indent("Default: ``%s``" % dvr))
lines.append("")
help = trait.help or "No description"
lines.append(indent(dedent(help)))
# Blank line
lines.append("")
return "\n".join(lines)
class Configurable(HasTraits):
config = Instance(Config, (), {})
parent = Instance('traitlets.config.configurable.Configurable',
allow_none=True)
def __init__(self, **kwargs):
"""Create a configurable given a config config.
Parameters
----------
config : Config
If this is empty, default values are used. If config is a
:class:`Config` instance, it will be used to configure the
instance.
parent : Configurable instance, optional
The parent Configurable instance of this object.
Notes
-----
Subclasses of Configurable must call the :meth:`__init__` method of
:class:`Configurable` *before* doing anything else and using
:func:`super`::
class MyConfigurable(Configurable):
def __init__(self, config=None):
super(MyConfigurable, self).__init__(config=config)
# Then any other code you need to finish initialization.
This ensures that instances will be configured properly.
"""
parent = kwargs.pop('parent', None)
if parent is not None:
# config is implied from parent
if kwargs.get('config', None) is None:
kwargs['config'] = parent.config
self.parent = parent
config = kwargs.pop('config', None)
# load kwarg traits, other than config
super(Configurable, self).__init__(**kwargs)
# load config
if config is not None:
# We used to deepcopy, but for now we are trying to just save
# by reference. This *could* have side effects as all components
# will share config. In fact, I did find such a side effect in
# _config_changed below. If a config attribute value was a mutable type
# all instances of a component were getting the same copy, effectively
# making that a class attribute.
# self.config = deepcopy(config)
self.config = config
else:
# allow _config_default to return something
self._load_config(self.config)
# Ensure explicit kwargs are applied after loading config.
# This is usually redundant, but ensures config doesn't override
# explicitly assigned values.
for key, value in kwargs.items():
setattr(self, key, value)
#-------------------------------------------------------------------------
# Static trait notifiations
#-------------------------------------------------------------------------
@classmethod
def section_names(cls):
"""return section names as a list"""
return [
c.__name__ for c in reversed(cls.__mro__)
if issubclass(c, Configurable) and issubclass(cls, c)
]
def _find_my_config(self, cfg):
"""extract my config from a global Config object
will construct a Config object of only the config values that apply to me
based on my mro(), as well as those of my parent(s) if they exist.
If I am Bar and my parent is Foo, and their parent is Tim,
this will return merge following config sections, in this order::
[Bar, Foo.bar, Tim.Foo.Bar]
With the last item being the highest priority.
"""
cfgs = [cfg]
if self.parent:
cfgs.append(self.parent._find_my_config(cfg))
my_config = Config()
for c in cfgs:
for sname in self.section_names():
# Don't do a blind getattr as that would cause the config to
# dynamically create the section with name Class.__name__.
if c._has_section(sname):
my_config.merge(c[sname])
return my_config
def _load_config(self, cfg, section_names=None, traits=None):
"""load traits from a Config object"""
if traits is None:
traits = self.traits(config=True)
if section_names is None:
section_names = self.section_names()
my_config = self._find_my_config(cfg)
# hold trait notifications until after all config has been loaded
with self.hold_trait_notifications():
for name, config_value in iteritems(my_config):
if name in traits:
if isinstance(config_value, LazyConfigValue):
# ConfigValue is a wrapper for using append / update on containers
# without having to copy the initial value
initial = getattr(self, name)
config_value = config_value.get_value(initial)
# We have to do a deepcopy here if we don't deepcopy the entire
# config object. If we don't, a mutable config_value will be
# shared by all instances, effectively making it a class attribute.
setattr(self, name, deepcopy(config_value))
def _config_changed(self, name, old, new):
"""Update all the class traits having ``config=True`` as metadata.
For any class trait with a ``config`` metadata attribute that is
``True``, we update the trait with the value of the corresponding
config entry.
"""
# Get all traits with a config metadata entry that is True
traits = self.traits(config=True)
# We auto-load config section for this class as well as any parent
# classes that are Configurable subclasses. This starts with Configurable
# and works down the mro loading the config for each section.
section_names = self.section_names()
self._load_config(new, traits=traits, section_names=section_names)
def update_config(self, config):
"""Fire the traits events when the config is updated."""
# Save a copy of the current config.
newconfig = deepcopy(self.config)
# Merge the new config into the current one.
newconfig.merge(config)
# Save the combined config as self.config, which triggers the traits
# events.
self.config = newconfig
@classmethod
def class_get_help(cls, inst=None):
"""Get the help string for this class in ReST format.
If `inst` is given, it's current trait values will be used in place of
class defaults.
"""
assert inst is None or isinstance(inst, cls)
final_help = []
final_help.append(u'%s options' % cls.__name__)
final_help.append(len(final_help[0]) * u'-')
for k, v in sorted(cls.class_traits(config=True).items()):
help = cls.class_get_trait_help(v, inst)
final_help.append(help)
return '\n'.join(final_help)
@classmethod
def class_get_trait_help(cls, trait, inst=None):
"""Get the help string for a single trait.
If `inst` is given, it's current trait values will be used in place of
the class default.
"""
assert inst is None or isinstance(inst, cls)
lines = []
header = "--%s.%s=<%s>" % (cls.__name__, trait.name,
trait.__class__.__name__)
lines.append(header)
if inst is not None:
lines.append(indent('Current: %r' % getattr(inst, trait.name), 4))
else:
try:
dvr = repr(trait.get_default_value())
except Exception:
dvr = None # ignore defaults we can't construct
if dvr is not None:
if len(dvr) > 64:
dvr = dvr[:61] + '...'
lines.append(indent('Default: %s' % dvr, 4))
if 'Enum' in trait.__class__.__name__:
# include Enum choices
lines.append(indent('Choices: %r' % (trait.values, )))
help = trait.get_metadata('help')
if help is not None:
help = '\n'.join(wrap_paragraphs(help, 76))
lines.append(indent(help, 4))
return '\n'.join(lines)
@classmethod
def class_print_help(cls, inst=None):
"""Get the help string for a single trait and print it."""
print(cls.class_get_help(inst))
@classmethod
def class_config_section(cls):
"""Get the config class config section"""
def c(s):
"""return a commented, wrapped block."""
s = '\n\n'.join(wrap_paragraphs(s, 78))
return '# ' + s.replace('\n', '\n# ')
# section header
breaker = '#' + '-' * 78
s = "# %s configuration" % cls.__name__
lines = [breaker, s, breaker, '']
# get the description trait
desc = cls.class_traits().get('description')
if desc:
desc = desc.default_value
else:
# no description trait, use __doc__
desc = getattr(cls, '__doc__', '')
if desc:
lines.append(c(desc))
lines.append('')
parents = []
for parent in cls.mro():
# only include parents that are not base classes
# and are not the class itself
# and have some configurable traits to inherit
if parent is not cls and issubclass(parent, Configurable) and \
parent.class_traits(config=True):
parents.append(parent)
if parents:
pstr = ', '.join([p.__name__ for p in parents])
lines.append(
c('%s will inherit config from: %s' % (cls.__name__, pstr)))
lines.append('')
for name, trait in iteritems(cls.class_traits(config=True)):
help = trait.get_metadata('help') or ''
lines.append(c(help))
lines.append('# c.%s.%s = %r' %
(cls.__name__, name, trait.get_default_value()))
lines.append('')
return '\n'.join(lines)
class SaveSimulationData(LogicNode):
"""Logic for saving simulation data.
Saved once
- Geometry
- Metadata
Saved continuously
- Agents
- Data
Examples:
>>> def save_condition(simulation, frequency=100):
>>> return (simulation.data['iterations'] + 1) % frequency == 0
>>>
>>> node = SaveSimulationData(save_condition=save_condition,
>>> base_directory='.')
"""
save_condition = Instance(
Callable,
# allow_none=True,
help='Function to trigger saving of data.')
base_directory = Unicode(
default_value='.',
help='Path to the directory where simulation data should be saved.')
save_directory = Unicode(
help='Name of the directory to save current simulation.')
def __init__(self, simulation, *args, **kwargs):
super().__init__(simulation, *args, **kwargs)
os.makedirs(self.full_path, exist_ok=True)
# Metadata
save_data_csv = save_csv(self.full_path, 'metadata')
save_data_csv.send(None)
save_data_csv.send(self.simulation.metadata)
save_data_csv.send(True)
# Geometry
geometries = {
name: getattr(self.simulation.field, name)
for name in ('domain', 'obstacles', 'targets', 'spawns')
}
save_geometry_json(os.path.join(self.full_path, 'geometry.json'),
geometries)
# Data
self.save_data_csv = save_csv(self.full_path, 'data')
self.save_data_csv.send(None)
# Agents
self.save_agent_npy = save_npy(self.full_path, 'agents')
self.save_agent_npy.send(None)
@property
def full_path(self):
return os.path.join(os.path.abspath(self.base_directory),
self.save_directory)
@default('save_directory')
def _default_save_directory(self):
return self.simulation.name_with_timestamp
def add_to_simulation_logic(self):
self.simulation.logic['Reset'].inject_before(self)
def update(self):
save = self.save_condition(self.simulation)
self.save_agent_npy.send(self.simulation.agents.array)
self.save_agent_npy.send(save)
self.save_data_csv.send(self.simulation.data)
self.save_data_csv.send(save)
class SSHHydraKernelProvisioner(FileManagementMixin, HydraKernelProvisioner):
host = Unicode()
user = Unicode()
private_key_file = Unicode(allow_none=True)
timeout = Int(DEFAULT_SSH_TIMEOUT)
sudo = Bool(False)
host_key_checking = Bool(
False,
help=
("If set, remote connections to hosts that do not have an entry in the "
"system host key list will raise an error."),
)
connection = Instance("hydra_kernel.provisioning.ssh.SSHConnection",
allow_none=True)
pid = Int(allow_none=True)
_kernelspecs: "Dict" = None
_subkernel_connection: "KernelConnectionInfo" = None
_tunnels: "Dict[str, Tuple[str, int]]" = {}
_tunnel_ctl_path: "str" = None
@property
def has_process(self) -> bool:
if self.connection is None:
return False
if self.pid is None:
return False
return True
def reset(self) -> None:
self.connection = None
self.pid = None
self._kernelspecs = None
self._tunnels = {}
self._tunnel_ctl_path = None
async def _save_host_key(self):
hosts_file_path = pathlib.Path(pathlib.Path.home(), ".ssh",
"known_hosts")
hosts_file_path.parent.mkdir(exist_ok=True)
hosts_file_path.touch()
with hosts_file_path.open("r+") as hosts_file:
start = f"# BEGIN hydra_kernel: {self.host}"
end = f"# END hydra_kernel: {self.host}"
lines = hosts_file.readlines()
start_i, end_i = 0, 0
for i, line in enumerate(lines):
if line == start:
start_i = i
elif line == end:
end_i = i
break
# Splice out block
lines = lines[:start_i] + lines[end_i:]
proc = await asyncio.create_subprocess_exec(
"ssh-keyscan",
"-H",
shlex.quote(self.host),
stdout=asyncio.subprocess.PIPE,
stderr=asyncio.subprocess.PIPE,
)
stdout, stderr = await proc.communicate()
if proc.returncode != 0:
LOG.warning((
f"Failed to update host key for {self.host}: {stderr.read()}"
))
lines.append(start)
lines.append(stdout.decode("utf-8"))
lines.append(end)
hosts_file.seek(0)
hosts_file.write("\n".join(lines))
async def pre_launch(self, **kwargs: "Any") -> "Dict[str, Any]":
kwargs = await super().pre_launch(**kwargs)
self.connection = SSHConnection(parent=self)
# Check if desired kernel exists on remote
self.binding.update_progress("Checking host kernels")
if not await self.has_hydra_kernelspec(self.subkernel_name):
self.binding.update_progress(
f"Installing {self.subkernel_name} kernel")
await self.provision_hydra_kernelspec(self.subkernel_name)
kwargs["cmd"] = [
"hydra-agent",
f"--kernel={self.subkernel_name}",
f"--id={self.kernel_id}",
f"--launcher=hydra-subkernel",
]
return kwargs
async def launch_kernel(self, command, **kwargs):
self.binding.update_progress("Establishing secure connection")
LOG.debug(f"{self.binding.name}: kernel_cmd={command}")
subkernel = self.connection.exec_json(command, login=True)
self._subkernel_connection = subkernel["connection"]
LOG.debug(
f"{self.binding.name}: connection={self._subkernel_connection}")
conn_info = self._subkernel_connection.copy()
if not self.host_key_checking:
await self._save_host_key()
for port_name in port_names:
conn_info[port_name] = await self._tunnel_to_port(port_name)
self.pid = int(subkernel["pid"])
return conn_info
async def send_signal(self, signum):
try:
self.connection.exec(f"kill -{signum} {self.pid}")
except BindingConnectionError as exc:
LOG.error(f"Failed to send signal: {exc}")
async def poll(self) -> "Optional[int]":
try:
# TODO: also check status of tunnels here
self.connection.exec(f"kill -0 {self.pid}")
except OSError:
return -1
async def cleanup(self, restart: bool = False) -> None:
for port_name, tunnel in self._tunnels.items():
try:
LOG.debug(
f"Killing {port_name} SSH tunnel (pid={tunnel['pid']})")
os.kill(tunnel["pid"])
except OSError:
pass
self._tunnels = {}
async def has_hydra_kernelspec(self, kernel_name):
try:
ret, _, _ = self.connection.exec("which hydra-subkernel")
if ret != 0:
return False
except RuntimeError as exc:
LOG.error(
f"Failed to check for hydra binaries on {self.binding_name}: {exc}"
)
return False
if not self._kernelspecs:
LOG.info(f"Fetching all kernel specs for '{self.binding.name}'")
try:
self._kernelspecs = self.connection.exec_json(
"jupyter kernelspec list --json --log-level ERROR",
login=True)["kernelspecs"]
except RuntimeError as exc:
LOG.warn(
f"Failed to list kernel specs on {self.binding.name}: {exc}"
)
return False
for spec_name, spec_info in self._kernelspecs.items():
lang = spec_info["spec"]["language"]
if spec_name == kernel_name or lang == kernel_name:
return True
return False
async def provision_hydra_kernelspec(self, kernel_name):
ansible_dir = os.path.join(sys.prefix, "share", "hydra-kernel",
"ansible")
host_vars = {
"ansible_host": self.host,
"ansible_user": self.user,
"ansible_become": self.sudo,
"ansible_ssh_private_key_file":
_expand_path(self.private_key_file),
# TODO: handle "via"
}
with tempfile.TemporaryDirectory() as tmpdir:
with redirect_stdout(io.StringIO()):
runner = ansible_runner.run(
private_data_dir=tmpdir,
project_dir=ansible_dir,
inventory={"all": {
"hosts": {
"KERNEL": host_vars
}
}},
playbook="kernel_action.yml",
extravars={
"kernel_name": kernel_name,
"kernel_action": "install",
},
event_handler=self._on_ansible_event,
# Don't output to stdout, store as JSON instead
quiet=True,
json_mode=True,
)
LOG.debug(runner.stdout.read())
if runner.status != "successful" or runner.errored:
raise RuntimeError(
f"Failed to install kernel {kernel_name}")
# Invalidate kernelspecs as we have installed a new one
self._kernelspecs = None
async def upload_path(self, local_path: "str", remote_path: "str" = None):
req_id = uuid.uuid4()
tmp_archive = f"/tmp/{req_id}.tar.gz"
self.binding.update_progress("Preparing upload")
fd = self.prepare_upload(local_path)
def _on_progress(filename, size, sent):
self.binding.update_progress(
f"Uploading ({math.floor((sent/size) * 100)}%)")
self.connection.put_file(fd, tmp_archive, on_progress=_on_progress)
self.binding.update_progress("Finishing")
self.connection.exec(["tar", "xzf", tmp_archive, "-C", remote_path])
self.connection.exec(["rm", "-f", tmp_archive])
async def download_path(self,
remote_path: "str",
local_path: "str" = None):
req_id = uuid.uuid4()
tmp_archive = f"/tmp/{req_id}.tar.gz"
self.binding.update_progress("Preparing download")
self.connection.exec(
["tar", "czf", tmp_archive, "-C", remote_path, "."])
def _on_progress(filename, size, sent):
self.binding.update_progress(
f"Downloading ({math.floor((sent/size) * 100)}%)")
with self.connection.get_file(tmp_archive,
on_progress=_on_progress) as archive_fd:
self.binding.update_progress("Finishing")
with tarfile.open(fileobj=archive_fd, mode="r") as tar:
tar.extractall(local_path)
self.connection.exec(["rm", "-f", tmp_archive])
async def _tunnel_to_port(self,
port_name: "str",
lport: "int" = None) -> "int":
stream = io.StringIO()
error = None
with redirect_stdout(stream):
try:
subkernel_conn = self._subkernel_connection
self.binding.update_progress(
f"Starting kernel {port_name} tunnel")
if not await self._is_tunnel_up():
await self._start_tunnel()
if not lport:
lport = select_random_ports(1)[0]
await self._forward_over_tunnel(lport,
subkernel_conn[port_name])
self._tunnels[port_name] = lport
except (RuntimeError, TypeError) as exc:
error = exc
if error:
stream.seek(0)
LOG.error(f"error={error}, stdout={stream.read()}")
raise RuntimeError(
f"Failed to establish tunnel for {port_name}: {error}")
return self._tunnels[port_name]
@property
def _ssh_host(self):
return f"{self.user}@{self.host}"
@property
def _ssh_cmd(self):
cmd = ["ssh"]
if self.private_key_file:
cmd.extend(["-i", _expand_path(self.private_key_file)])
return cmd
async def _start_tunnel(self):
self._tunnel_ctl_path = pathlib.Path(
tempfile.gettempdir(),
f"{self.user}-{self.host.replace('.', '-')}.tunnel")
if self._tunnel_ctl_path.exists():
self._tunnel_ctl_path.unlink()
cmd = self._ssh_cmd
cmd.extend([
"-fN", # -f = background process, -N = don't run a command
"-o",
"ControlMaster=yes",
"-o",
f"ControlPath={self._tunnel_ctl_path}",
"-o",
"ServerAliveInterval=5",
self._ssh_host,
])
tunnel_proc = await asyncio.create_subprocess_exec(*cmd)
_, stderr = await tunnel_proc.communicate()
if tunnel_proc.returncode != 0:
try:
self._tunnel_ctl_path = None
except:
pass
raise RuntimeError(
f"Failed to establish SSH tunnel to {self.host}")
async def _forward_over_tunnel(self, lport, rport):
LOG.debug(f"_forward_over_tunnel: forwarding {lport} => {rport}")
returncode, _, _ = await self._tunnel_command(
["forward", "-L", f"127.0.0.1:{lport}:127.0.0.1:{rport}"])
async def _is_tunnel_up(self):
if not self._tunnel_ctl_path:
return False
returncode, _, _ = await self._tunnel_command(["check"])
return returncode == 0
async def _tunnel_command(self, cmd: "list[str]"):
proc = await asyncio.create_subprocess_exec(
*self._ssh_cmd,
"-o",
f"ControlPath={self._tunnel_ctl_path}",
"-O",
*cmd,
self._ssh_host,
stdout=asyncio.subprocess.PIPE,
stderr=asyncio.subprocess.PIPE,
)
stdout, stderr = await proc.communicate()
return proc.returncode, stdout, stderr
def _on_ansible_event(self, event):
current_task = event.get("event_data", {}).get("task")
if current_task:
self.binding.update_progress(current_task)
class IPKernelApp(BaseIPythonApplication, InteractiveShellApp, ConnectionFileMixin):
name = "ipython-kernel"
aliases = Dict(kernel_aliases)
flags = Dict(kernel_flags)
classes = [IPythonKernel, ZMQInteractiveShell, ProfileDir, Session]
# the kernel class, as an importstring
kernel_class = Type(
"ipykernel.ipkernel.IPythonKernel",
klass="ipykernel.kernelbase.Kernel",
help="""The Kernel subclass to be used.
This should allow easy re-use of the IPKernelApp entry point
to configure and launch kernels other than IPython's own.
""",
).tag(config=True)
kernel = Any()
poller = Any() # don't restrict this even though current pollers are all Threads
heartbeat = Instance(Heartbeat, allow_none=True)
context = Any()
shell_socket = Any()
control_socket = Any()
debugpy_socket = Any()
debug_shell_socket = Any()
stdin_socket = Any()
iopub_socket = Any()
iopub_thread = Any()
control_thread = Any()
_ports = Dict()
subcommands = {
"install": (
"ipykernel.kernelspec.InstallIPythonKernelSpecApp",
"Install the IPython kernel",
),
}
# connection info:
connection_dir = Unicode()
@default("connection_dir")
def _default_connection_dir(self):
return jupyter_runtime_dir()
@property
def abs_connection_file(self):
if os.path.basename(self.connection_file) == self.connection_file:
return os.path.join(self.connection_dir, self.connection_file)
else:
return self.connection_file
# streams, etc.
no_stdout = Bool(False, help="redirect stdout to the null device").tag(config=True)
no_stderr = Bool(False, help="redirect stderr to the null device").tag(config=True)
trio_loop = Bool(False, help="Set main event loop.").tag(config=True)
quiet = Bool(True, help="Only send stdout/stderr to output stream").tag(config=True)
outstream_class = DottedObjectName(
"ipykernel.iostream.OutStream", help="The importstring for the OutStream factory"
).tag(config=True)
displayhook_class = DottedObjectName(
"ipykernel.displayhook.ZMQDisplayHook", help="The importstring for the DisplayHook factory"
).tag(config=True)
capture_fd_output = Bool(
True,
help="""Attempt to capture and forward low-level output, e.g. produced by Extension libraries.
""",
).tag(config=True)
# polling
parent_handle = Integer(
int(os.environ.get("JPY_PARENT_PID") or 0),
help="""kill this process if its parent dies. On Windows, the argument
specifies the HANDLE of the parent process, otherwise it is simply boolean.
""",
).tag(config=True)
interrupt = Integer(
int(os.environ.get("JPY_INTERRUPT_EVENT") or 0),
help="""ONLY USED ON WINDOWS
Interrupt this process when the parent is signaled.
""",
).tag(config=True)
def init_crash_handler(self):
sys.excepthook = self.excepthook
def excepthook(self, etype, evalue, tb):
# write uncaught traceback to 'real' stderr, not zmq-forwarder
traceback.print_exception(etype, evalue, tb, file=sys.__stderr__)
def init_poller(self):
if sys.platform == "win32":
if self.interrupt or self.parent_handle:
self.poller = ParentPollerWindows(self.interrupt, self.parent_handle)
elif self.parent_handle and self.parent_handle != 1:
# PID 1 (init) is special and will never go away,
# only be reassigned.
# Parent polling doesn't work if ppid == 1 to start with.
self.poller = ParentPollerUnix()
def _try_bind_socket(self, s, port):
iface = "%s://%s" % (self.transport, self.ip)
if self.transport == "tcp":
if port <= 0:
port = s.bind_to_random_port(iface)
else:
s.bind("tcp://%s:%i" % (self.ip, port))
elif self.transport == "ipc":
if port <= 0:
port = 1
path = "%s-%i" % (self.ip, port)
while os.path.exists(path):
port = port + 1
path = "%s-%i" % (self.ip, port)
else:
path = "%s-%i" % (self.ip, port)
s.bind("ipc://%s" % path)
return port
def _bind_socket(self, s, port):
try:
win_in_use = errno.WSAEADDRINUSE # type:ignore[attr-defined]
except AttributeError:
win_in_use = None
# Try up to 100 times to bind a port when in conflict to avoid
# infinite attempts in bad setups
max_attempts = 1 if port else 100
for attempt in range(max_attempts):
try:
return self._try_bind_socket(s, port)
except zmq.ZMQError as ze:
# Raise if we have any error not related to socket binding
if ze.errno != errno.EADDRINUSE and ze.errno != win_in_use:
raise
if attempt == max_attempts - 1:
raise
def write_connection_file(self):
"""write connection info to JSON file"""
cf = self.abs_connection_file
self.log.debug("Writing connection file: %s", cf)
write_connection_file(
cf,
ip=self.ip,
key=self.session.key,
transport=self.transport,
shell_port=self.shell_port,
stdin_port=self.stdin_port,
hb_port=self.hb_port,
iopub_port=self.iopub_port,
control_port=self.control_port,
)
def cleanup_connection_file(self):
cf = self.abs_connection_file
self.log.debug("Cleaning up connection file: %s", cf)
try:
os.remove(cf)
except OSError:
pass
self.cleanup_ipc_files()
def init_connection_file(self):
if not self.connection_file:
self.connection_file = "kernel-%s.json" % os.getpid()
try:
self.connection_file = filefind(self.connection_file, [".", self.connection_dir])
except OSError:
self.log.debug("Connection file not found: %s", self.connection_file)
# This means I own it, and I'll create it in this directory:
os.makedirs(os.path.dirname(self.abs_connection_file), mode=0o700, exist_ok=True)
# Also, I will clean it up:
atexit.register(self.cleanup_connection_file)
return
try:
self.load_connection_file()
except Exception:
self.log.error(
"Failed to load connection file: %r", self.connection_file, exc_info=True
)
self.exit(1)
def init_sockets(self):
# Create a context, a session, and the kernel sockets.
self.log.info("Starting the kernel at pid: %i", os.getpid())
assert self.context is None, "init_sockets cannot be called twice!"
self.context = context = zmq.Context()
atexit.register(self.close)
self.shell_socket = context.socket(zmq.ROUTER)
self.shell_socket.linger = 1000
self.shell_port = self._bind_socket(self.shell_socket, self.shell_port)
self.log.debug("shell ROUTER Channel on port: %i" % self.shell_port)
self.stdin_socket = context.socket(zmq.ROUTER)
self.stdin_socket.linger = 1000
self.stdin_port = self._bind_socket(self.stdin_socket, self.stdin_port)
self.log.debug("stdin ROUTER Channel on port: %i" % self.stdin_port)
if hasattr(zmq, "ROUTER_HANDOVER"):
# set router-handover to workaround zeromq reconnect problems
# in certain rare circumstances
# see ipython/ipykernel#270 and zeromq/libzmq#2892
self.shell_socket.router_handover = self.stdin_socket.router_handover = 1
self.init_control(context)
self.init_iopub(context)
def init_control(self, context):
self.control_socket = context.socket(zmq.ROUTER)
self.control_socket.linger = 1000
self.control_port = self._bind_socket(self.control_socket, self.control_port)
self.log.debug("control ROUTER Channel on port: %i" % self.control_port)
self.debugpy_socket = context.socket(zmq.STREAM)
self.debugpy_socket.linger = 1000
self.debug_shell_socket = context.socket(zmq.DEALER)
self.debug_shell_socket.linger = 1000
if self.shell_socket.getsockopt(zmq.LAST_ENDPOINT):
self.debug_shell_socket.connect(self.shell_socket.getsockopt(zmq.LAST_ENDPOINT))
if hasattr(zmq, "ROUTER_HANDOVER"):
# set router-handover to workaround zeromq reconnect problems
# in certain rare circumstances
# see ipython/ipykernel#270 and zeromq/libzmq#2892
self.control_socket.router_handover = 1
self.control_thread = ControlThread(daemon=True)
def init_iopub(self, context):
self.iopub_socket = context.socket(zmq.PUB)
self.iopub_socket.linger = 1000
self.iopub_port = self._bind_socket(self.iopub_socket, self.iopub_port)
self.log.debug("iopub PUB Channel on port: %i" % self.iopub_port)
self.configure_tornado_logger()
self.iopub_thread = IOPubThread(self.iopub_socket, pipe=True)
self.iopub_thread.start()
# backward-compat: wrap iopub socket API in background thread
self.iopub_socket = self.iopub_thread.background_socket
def init_heartbeat(self):
"""start the heart beating"""
# heartbeat doesn't share context, because it mustn't be blocked
# by the GIL, which is accessed by libzmq when freeing zero-copy messages
hb_ctx = zmq.Context()
self.heartbeat = Heartbeat(hb_ctx, (self.transport, self.ip, self.hb_port))
self.hb_port = self.heartbeat.port
self.log.debug("Heartbeat REP Channel on port: %i" % self.hb_port)
self.heartbeat.start()
def close(self):
"""Close zmq sockets in an orderly fashion"""
# un-capture IO before we start closing channels
self.reset_io()
self.log.info("Cleaning up sockets")
if self.heartbeat:
self.log.debug("Closing heartbeat channel")
self.heartbeat.context.term()
if self.iopub_thread:
self.log.debug("Closing iopub channel")
self.iopub_thread.stop()
self.iopub_thread.close()
if self.control_thread and self.control_thread.is_alive():
self.log.debug("Closing control thread")
self.control_thread.stop()
self.control_thread.join()
if self.debugpy_socket and not self.debugpy_socket.closed:
self.debugpy_socket.close()
if self.debug_shell_socket and not self.debug_shell_socket.closed:
self.debug_shell_socket.close()
for channel in ("shell", "control", "stdin"):
self.log.debug("Closing %s channel", channel)
socket = getattr(self, channel + "_socket", None)
if socket and not socket.closed:
socket.close()
self.log.debug("Terminating zmq context")
self.context.term()
self.log.debug("Terminated zmq context")
def log_connection_info(self):
"""display connection info, and store ports"""
basename = os.path.basename(self.connection_file)
if (
basename == self.connection_file
or os.path.dirname(self.connection_file) == self.connection_dir
):
# use shortname
tail = basename
else:
tail = self.connection_file
lines = [
"To connect another client to this kernel, use:",
" --existing %s" % tail,
]
# log connection info
# info-level, so often not shown.
# frontends should use the %connect_info magic
# to see the connection info
for line in lines:
self.log.info(line)
# also raw print to the terminal if no parent_handle (`ipython kernel`)
# unless log-level is CRITICAL (--quiet)
if not self.parent_handle and self.log_level < logging.CRITICAL:
print(_ctrl_c_message, file=sys.__stdout__)
for line in lines:
print(line, file=sys.__stdout__)
self._ports = dict(
shell=self.shell_port,
iopub=self.iopub_port,
stdin=self.stdin_port,
hb=self.hb_port,
control=self.control_port,
)
def init_blackhole(self):
"""redirects stdout/stderr to devnull if necessary"""
if self.no_stdout or self.no_stderr:
blackhole = open(os.devnull, "w")
if self.no_stdout:
sys.stdout = sys.__stdout__ = blackhole
if self.no_stderr:
sys.stderr = sys.__stderr__ = blackhole
def init_io(self):
"""Redirect input streams and set a display hook."""
if self.outstream_class:
outstream_factory = import_item(str(self.outstream_class))
if sys.stdout is not None:
sys.stdout.flush()
e_stdout = None if self.quiet else sys.__stdout__
e_stderr = None if self.quiet else sys.__stderr__
if not self.capture_fd_output:
outstream_factory = partial(outstream_factory, watchfd=False)
sys.stdout = outstream_factory(self.session, self.iopub_thread, "stdout", echo=e_stdout)
if sys.stderr is not None:
sys.stderr.flush()
sys.stderr = outstream_factory(self.session, self.iopub_thread, "stderr", echo=e_stderr)
if hasattr(sys.stderr, "_original_stdstream_copy"):
for handler in self.log.handlers:
if isinstance(handler, StreamHandler) and (handler.stream.buffer.fileno() == 2):
self.log.debug("Seeing logger to stderr, rerouting to raw filedescriptor.")
handler.stream = TextIOWrapper(
FileIO(
sys.stderr._original_stdstream_copy, # type:ignore[attr-defined]
"w",
)
)
if self.displayhook_class:
displayhook_factory = import_item(str(self.displayhook_class))
self.displayhook = displayhook_factory(self.session, self.iopub_socket)
sys.displayhook = self.displayhook
self.patch_io()
def reset_io(self):
"""restore original io
restores state after init_io
"""
sys.stdout = sys.__stdout__
sys.stderr = sys.__stderr__
sys.displayhook = sys.__displayhook__
def patch_io(self):
"""Patch important libraries that can't handle sys.stdout forwarding"""
try:
import faulthandler
except ImportError:
pass
else:
# Warning: this is a monkeypatch of `faulthandler.enable`, watch for possible
# updates to the upstream API and update accordingly (up-to-date as of Python 3.5):
# https://docs.python.org/3/library/faulthandler.html#faulthandler.enable
# change default file to __stderr__ from forwarded stderr
faulthandler_enable = faulthandler.enable
def enable(file=sys.__stderr__, all_threads=True, **kwargs):
return faulthandler_enable(file=file, all_threads=all_threads, **kwargs)
faulthandler.enable = enable
if hasattr(faulthandler, "register"):
faulthandler_register = faulthandler.register
def register(signum, file=sys.__stderr__, all_threads=True, chain=False, **kwargs):
return faulthandler_register(
signum, file=file, all_threads=all_threads, chain=chain, **kwargs
)
faulthandler.register = register
def init_signal(self):
signal.signal(signal.SIGINT, signal.SIG_IGN)
def init_kernel(self):
"""Create the Kernel object itself"""
shell_stream = ZMQStream(self.shell_socket)
control_stream = ZMQStream(self.control_socket, self.control_thread.io_loop)
debugpy_stream = ZMQStream(self.debugpy_socket, self.control_thread.io_loop)
self.control_thread.start()
kernel_factory = self.kernel_class.instance
kernel = kernel_factory(
parent=self,
session=self.session,
control_stream=control_stream,
debugpy_stream=debugpy_stream,
debug_shell_socket=self.debug_shell_socket,
shell_stream=shell_stream,
control_thread=self.control_thread,
iopub_thread=self.iopub_thread,
iopub_socket=self.iopub_socket,
stdin_socket=self.stdin_socket,
log=self.log,
profile_dir=self.profile_dir,
user_ns=self.user_ns,
)
kernel.record_ports({name + "_port": port for name, port in self._ports.items()})
self.kernel = kernel
# Allow the displayhook to get the execution count
self.displayhook.get_execution_count = lambda: kernel.execution_count
def init_gui_pylab(self):
"""Enable GUI event loop integration, taking pylab into account."""
# Register inline backend as default
# this is higher priority than matplotlibrc,
# but lower priority than anything else (mpl.use() for instance).
# This only affects matplotlib >= 1.5
if not os.environ.get("MPLBACKEND"):
os.environ["MPLBACKEND"] = "module://matplotlib_inline.backend_inline"
# Provide a wrapper for :meth:`InteractiveShellApp.init_gui_pylab`
# to ensure that any exception is printed straight to stderr.
# Normally _showtraceback associates the reply with an execution,
# which means frontends will never draw it, as this exception
# is not associated with any execute request.
shell = self.shell
assert shell is not None
_showtraceback = shell._showtraceback
try:
# replace error-sending traceback with stderr
def print_tb(etype, evalue, stb):
print("GUI event loop or pylab initialization failed", file=sys.stderr)
assert shell is not None
print(shell.InteractiveTB.stb2text(stb), file=sys.stderr)
shell._showtraceback = print_tb
InteractiveShellApp.init_gui_pylab(self)
finally:
shell._showtraceback = _showtraceback
def init_shell(self):
self.shell = getattr(self.kernel, "shell", None)
if self.shell:
self.shell.configurables.append(self)
def configure_tornado_logger(self):
"""Configure the tornado logging.Logger.
Must set up the tornado logger or else tornado will call
basicConfig for the root logger which makes the root logger
go to the real sys.stderr instead of the capture streams.
This function mimics the setup of logging.basicConfig.
"""
logger = logging.getLogger("tornado")
handler = logging.StreamHandler()
formatter = logging.Formatter(logging.BASIC_FORMAT)
handler.setFormatter(formatter)
logger.addHandler(handler)
def _init_asyncio_patch(self):
"""set default asyncio policy to be compatible with tornado
Tornado 6 (at least) is not compatible with the default
asyncio implementation on Windows
Pick the older SelectorEventLoopPolicy on Windows
if the known-incompatible default policy is in use.
Support for Proactor via a background thread is available in tornado 6.1,
but it is still preferable to run the Selector in the main thread
instead of the background.
do this as early as possible to make it a low priority and overrideable
ref: https://github.com/tornadoweb/tornado/issues/2608
FIXME: if/when tornado supports the defaults in asyncio without threads,
remove and bump tornado requirement for py38.
Most likely, this will mean a new Python version
where asyncio.ProactorEventLoop supports add_reader and friends.
"""
if sys.platform.startswith("win") and sys.version_info >= (3, 8):
import asyncio
try:
from asyncio import (
WindowsProactorEventLoopPolicy,
WindowsSelectorEventLoopPolicy,
)
except ImportError:
pass
# not affected
else:
if type(asyncio.get_event_loop_policy()) is WindowsProactorEventLoopPolicy:
# WindowsProactorEventLoopPolicy is not compatible with tornado 6
# fallback to the pre-3.8 default of Selector
asyncio.set_event_loop_policy(WindowsSelectorEventLoopPolicy())
def init_pdb(self):
"""Replace pdb with IPython's version that is interruptible.
With the non-interruptible version, stopping pdb() locks up the kernel in a
non-recoverable state.
"""
import pdb
from IPython.core import debugger
if hasattr(debugger, "InterruptiblePdb"):
# Only available in newer IPython releases:
debugger.Pdb = debugger.InterruptiblePdb
pdb.Pdb = debugger.Pdb # type:ignore[misc]
pdb.set_trace = debugger.set_trace
@catch_config_error
def initialize(self, argv=None):
self._init_asyncio_patch()
super().initialize(argv)
if self.subapp is not None:
return
self.init_pdb()
self.init_blackhole()
self.init_connection_file()
self.init_poller()
self.init_sockets()
self.init_heartbeat()
# writing/displaying connection info must be *after* init_sockets/heartbeat
self.write_connection_file()
# Log connection info after writing connection file, so that the connection
# file is definitely available at the time someone reads the log.
self.log_connection_info()
self.init_io()
try:
self.init_signal()
except Exception:
# Catch exception when initializing signal fails, eg when running the
# kernel on a separate thread
if self.log_level < logging.CRITICAL:
self.log.error("Unable to initialize signal:", exc_info=True)
self.init_kernel()
# shell init steps
self.init_path()
self.init_shell()
if self.shell:
self.init_gui_pylab()
self.init_extensions()
self.init_code()
# flush stdout/stderr, so that anything written to these streams during
# initialization do not get associated with the first execution request
sys.stdout.flush()
sys.stderr.flush()
def start(self):
if self.subapp is not None:
return self.subapp.start()
if self.poller is not None:
self.poller.start()
self.kernel.start()
self.io_loop = ioloop.IOLoop.current()
if self.trio_loop:
from ipykernel.trio_runner import TrioRunner
tr = TrioRunner()
tr.initialize(self.kernel, self.io_loop)
try:
tr.run()
except KeyboardInterrupt:
pass
else:
try:
self.io_loop.start()
except KeyboardInterrupt:
pass
class Application(SingletonConfigurable):
"""A singleton application with full configuration support."""
# The name of the application, will usually match the name of the command
# line application
name = Unicode("application")
# The description of the application that is printed at the beginning
# of the help.
description = Unicode("This is an application.")
# default section descriptions
option_description = Unicode(option_description)
keyvalue_description = Unicode(keyvalue_description)
subcommand_description = Unicode(subcommand_description)
python_config_loader_class = PyFileConfigLoader
json_config_loader_class = JSONFileConfigLoader
# The usage and example string that goes at the end of the help string.
examples = Unicode()
# A sequence of Configurable subclasses whose config=True attributes will
# be exposed at the command line.
classes: t.List[t.Type[t.Any]] = []
def _classes_inc_parents(self, classes=None):
"""Iterate through configurable classes, including configurable parents
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Children should always be after parents, and each class should only be
yielded once.
"""
if classes is None:
classes = self.classes
seen = set()
for c in classes:
# We want to sort parents before children, so we reverse the MRO
for parent in reversed(c.mro()):
if issubclass(parent, Configurable) and (parent not in seen):
seen.add(parent)
yield parent
# The version string of this application.
version = Unicode("0.0")
# the argv used to initialize the application
argv = List()
# Whether failing to load config files should prevent startup
raise_config_file_errors = Bool(TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR)
# The log level for the application
log_level = Enum(
(0, 10, 20, 30, 40, 50, "DEBUG", "INFO", "WARN", "ERROR", "CRITICAL"),
default_value=logging.WARN,
help="Set the log level by value or name.",
).tag(config=True)
_log_formatter_cls = LevelFormatter
log_datefmt = Unicode(
"%Y-%m-%d %H:%M:%S", help="The date format used by logging formatters for %(asctime)s"
).tag(config=True)
log_format = Unicode(
"[%(name)s]%(highlevel)s %(message)s",
help="The Logging format template",
).tag(config=True)
def get_default_logging_config(self):
"""Return the base logging configuration.
The default is to log to stderr using a StreamHandler, if no default
handler already exists.
The log handler level starts at logging.WARN, but this can be adjusted
by setting the ``log_level`` attribute.
The ``logging_config`` trait is merged into this allowing for finer
control of logging.
"""
config: t.Dict[str, t.Any] = {
"version": 1,
"handlers": {
"console": {
"class": "logging.StreamHandler",
"formatter": "console",
"level": logging.getLevelName(self.log_level),
"stream": "ext://sys.stderr",
},
},
"formatters": {
"console": {
"class": (
f"{self._log_formatter_cls.__module__}"
f".{self._log_formatter_cls.__name__}"
),
"format": self.log_format,
"datefmt": self.log_datefmt,
},
},
"loggers": {
self.__class__.__name__: {
"level": "DEBUG",
"handlers": ["console"],
}
},
"disable_existing_loggers": False,
}
if sys.executable and sys.executable.endswith("pythonw.exe"):
# disable logging
# (this should really go to a file, but file-logging is only
# hooked up in parallel applications)
del config["handlers"]["loggers"]
return config
@observe("log_datefmt", "log_format", "log_level", "logging_config")
def _observe_logging_change(self, change):
# convert log level strings to ints
log_level = self.log_level
if isinstance(log_level, str):
self.log_level = getattr(logging, log_level)
self._configure_logging()
@observe("log", type="default")
def _observe_logging_default(self, change):
self._configure_logging()
def _configure_logging(self):
config = self.get_default_logging_config()
nested_update(config, self.logging_config or {})
dictConfig(config)
# make a note that we have configured logging
self._logging_configured = True
@default("log")
def _log_default(self):
"""Start logging for this application."""
log = logging.getLogger(self.__class__.__name__)
log.propagate = False
_log = log # copied from Logger.hasHandlers() (new in Python 3.2)
while _log:
if _log.handlers:
return log
if not _log.propagate:
break
else:
_log = _log.parent # type:ignore[assignment]
return log
logging_config = Dict(
help="""
Configure additional log handlers.
The default stderr logs handler is configured by the
log_level, log_datefmt and log_format settings.
This configuration can be used to configure additional handlers
(e.g. to output the log to a file) or for finer control over the
default handlers.
If provided this should be a logging configuration dictionary, for
more information see:
https://docs.python.org/3/library/logging.config.html#logging-config-dictschema
This dictionary is merged with the base logging configuration which
defines the following:
* A logging formatter intended for interactive use called
``console``.
* A logging handler that writes to stderr called
``console`` which uses the formatter ``console``.
* A logger with the name of this application set to ``DEBUG``
level.
This example adds a new handler that writes to a file:
.. code-block:: python
c.Application.logging_configuration = {
'handlers': {
'file': {
'class': 'logging.FileHandler',
'level': 'DEBUG',
'filename': '<path/to/file>',
}
},
'loggers': {
'<application-name>': {
'level': 'DEBUG',
# NOTE: if you don't list the default "console"
# handler here then it will be disabled
'handlers': ['console', 'file'],
},
}
}
""",
).tag(config=True)
#: the alias map for configurables
#: Keys might strings or tuples for additional options; single-letter alias accessed like `-v`.
#: Values might be like "Class.trait" strings of two-tuples: (Class.trait, help-text).
aliases: t.Dict[str, str] = {"log-level": "Application.log_level"}
# flags for loading Configurables or store_const style flags
# flags are loaded from this dict by '--key' flags
# this must be a dict of two-tuples, the first element being the Config/dict
# and the second being the help string for the flag
flags: t.Dict[str, t.Any] = {
"debug": (
{
"Application": {
"log_level": logging.DEBUG,
},
},
"Set log-level to debug, for the most verbose logging.",
),
"show-config": (
{
"Application": {
"show_config": True,
},
},
"Show the application's configuration (human-readable format)",
),
"show-config-json": (
{
"Application": {
"show_config_json": True,
},
},
"Show the application's configuration (json format)",
),
}
# subcommands for launching other applications
# if this is not empty, this will be a parent Application
# this must be a dict of two-tuples,
# the first element being the application class/import string
# and the second being the help string for the subcommand
subcommands = Dict()
# parse_command_line will initialize a subapp, if requested
subapp = Instance("traitlets.config.application.Application", allow_none=True)
# extra command-line arguments that don't set config values
extra_args = List(Unicode())
cli_config = Instance(
Config,
(),
{},
help="""The subset of our configuration that came from the command-line
We re-load this configuration after loading config files,
to ensure that it maintains highest priority.
""",
)
_loaded_config_files = List()
show_config = Bool(
help="Instead of starting the Application, dump configuration to stdout"
).tag(config=True)
show_config_json = Bool(
help="Instead of starting the Application, dump configuration to stdout (as JSON)"
).tag(config=True)
@observe("show_config_json")
def _show_config_json_changed(self, change):
self.show_config = change.new
@observe("show_config")
def _show_config_changed(self, change):
if change.new:
self._save_start = self.start
self.start = self.start_show_config # type:ignore[assignment]
def __init__(self, **kwargs):
SingletonConfigurable.__init__(self, **kwargs)
# Ensure my class is in self.classes, so my attributes appear in command line
# options and config files.
cls = self.__class__
if cls not in self.classes:
if self.classes is cls.classes:
# class attr, assign instead of insert
self.classes = [cls] + self.classes
else:
self.classes.insert(0, self.__class__)
@observe("config")
@observe_compat
def _config_changed(self, change):
super()._config_changed(change)
self.log.debug("Config changed: %r", change.new)
@catch_config_error
def initialize(self, argv=None):
"""Do the basic steps to configure me.
Override in subclasses.
"""
self.parse_command_line(argv)
def start(self):
"""Start the app mainloop.
Override in subclasses.
"""
if self.subapp is not None:
return self.subapp.start()
def start_show_config(self):
"""start function used when show_config is True"""
config = self.config.copy()
# exclude show_config flags from displayed config
for cls in self.__class__.mro():
if cls.__name__ in config:
cls_config = config[cls.__name__]
cls_config.pop("show_config", None)
cls_config.pop("show_config_json", None)
if self.show_config_json:
json.dump(config, sys.stdout, indent=1, sort_keys=True, default=repr)
# add trailing newline
sys.stdout.write("\n")
return
if self._loaded_config_files:
print("Loaded config files:")
for f in self._loaded_config_files:
print(" " + f)
print()
for classname in sorted(config):
class_config = config[classname]
if not class_config:
continue
print(classname)
pformat_kwargs: t.Dict[str, t.Any] = dict(indent=4, compact=True)
for traitname in sorted(class_config):
value = class_config[traitname]
print(
" .{} = {}".format(
traitname,
pprint.pformat(value, **pformat_kwargs),
)
)
def print_alias_help(self):
"""Print the alias parts of the help."""
print("\n".join(self.emit_alias_help()))
def emit_alias_help(self):
"""Yield the lines for alias part of the help."""
if not self.aliases:
return
classdict = {}
for cls in self.classes:
# include all parents (up to, but excluding Configurable) in available names
for c in cls.mro()[:-3]:
classdict[c.__name__] = c
for alias, longname in self.aliases.items():
try:
if isinstance(longname, tuple):
longname, fhelp = longname
else:
fhelp = None
classname, traitname = longname.split(".")[-2:]
longname = classname + "." + traitname
cls = classdict[classname]
trait = cls.class_traits(config=True)[traitname]
fhelp = cls.class_get_trait_help(trait, helptext=fhelp).splitlines()
if not isinstance(alias, tuple):
alias = (alias,) # type:ignore[assignment]
alias = sorted(alias, key=len) # type:ignore[assignment]
alias = ", ".join(("--%s" if len(m) > 1 else "-%s") % m for m in alias)
# reformat first line
fhelp[0] = fhelp[0].replace("--" + longname, alias)
yield from fhelp
yield indent("Equivalent to: [--%s]" % longname)
except Exception as ex:
self.log.error("Failed collecting help-message for alias %r, due to: %s", alias, ex)
raise
def print_flag_help(self):
"""Print the flag part of the help."""
print("\n".join(self.emit_flag_help()))
def emit_flag_help(self):
"""Yield the lines for the flag part of the help."""
if not self.flags:
return
for flags, (cfg, fhelp) in self.flags.items():
try:
if not isinstance(flags, tuple):
flags = (flags,) # type:ignore[assignment]
flags = sorted(flags, key=len) # type:ignore[assignment]
flags = ", ".join(("--%s" if len(m) > 1 else "-%s") % m for m in flags)
yield flags
yield indent(dedent(fhelp.strip()))
cfg_list = " ".join(
f"--{clname}.{prop}={val}"
for clname, props_dict in cfg.items()
for prop, val in props_dict.items()
)
cfg_txt = "Equivalent to: [%s]" % cfg_list
yield indent(dedent(cfg_txt))
except Exception as ex:
self.log.error("Failed collecting help-message for flag %r, due to: %s", flags, ex)
raise
def print_options(self):
"""Print the options part of the help."""
print("\n".join(self.emit_options_help()))
def emit_options_help(self):
"""Yield the lines for the options part of the help."""
if not self.flags and not self.aliases:
return
header = "Options"
yield header
yield "=" * len(header)
for p in wrap_paragraphs(self.option_description):
yield p
yield ""
yield from self.emit_flag_help()
yield from self.emit_alias_help()
yield ""
def print_subcommands(self):
"""Print the subcommand part of the help."""
print("\n".join(self.emit_subcommands_help()))
def emit_subcommands_help(self):
"""Yield the lines for the subcommand part of the help."""
if not self.subcommands:
return
header = "Subcommands"
yield header
yield "=" * len(header)
for p in wrap_paragraphs(self.subcommand_description.format(app=self.name)):
yield p
yield ""
for subc, (_, help) in self.subcommands.items():
yield subc
if help:
yield indent(dedent(help.strip()))
yield ""
def emit_help_epilogue(self, classes):
"""Yield the very bottom lines of the help message.
If classes=False (the default), print `--help-all` msg.
"""
if not classes:
yield "To see all available configurables, use `--help-all`."
yield ""
def print_help(self, classes=False):
"""Print the help for each Configurable class in self.classes.
If classes=False (the default), only flags and aliases are printed.
"""
print("\n".join(self.emit_help(classes=classes)))
def emit_help(self, classes=False):
"""Yield the help-lines for each Configurable class in self.classes.
If classes=False (the default), only flags and aliases are printed.
"""
yield from self.emit_description()
yield from self.emit_subcommands_help()
yield from self.emit_options_help()
if classes:
help_classes = self._classes_with_config_traits()
if help_classes:
yield "Class options"
yield "============="
for p in wrap_paragraphs(self.keyvalue_description):
yield p
yield ""
for cls in help_classes:
yield cls.class_get_help()
yield ""
yield from self.emit_examples()
yield from self.emit_help_epilogue(classes)
def document_config_options(self):
"""Generate rST format documentation for the config options this application
Returns a multiline string.
"""
return "\n".join(c.class_config_rst_doc() for c in self._classes_inc_parents())
def print_description(self):
"""Print the application description."""
print("\n".join(self.emit_description()))
def emit_description(self):
"""Yield lines with the application description."""
for p in wrap_paragraphs(self.description or self.__doc__ or ""):
yield p
yield ""
def print_examples(self):
"""Print usage and examples (see `emit_examples()`)."""
print("\n".join(self.emit_examples()))
def emit_examples(self):
"""Yield lines with the usage and examples.
This usage string goes at the end of the command line help string
and should contain examples of the application's usage.
"""
if self.examples:
yield "Examples"
yield "--------"
yield ""
yield indent(dedent(self.examples.strip()))
yield ""
def print_version(self):
"""Print the version string."""
print(self.version)
@catch_config_error
def initialize_subcommand(self, subc, argv=None):
"""Initialize a subcommand with argv."""
subapp, _ = self.subcommands.get(subc)
if isinstance(subapp, str):
subapp = import_item(subapp)
# Cannot issubclass() on a non-type (SOhttp://stackoverflow.com/questions/8692430)
if isinstance(subapp, type) and issubclass(subapp, Application):
# Clear existing instances before...
self.__class__.clear_instance()
# instantiating subapp...
self.subapp = subapp.instance(parent=self)
elif callable(subapp):
# or ask factory to create it...
self.subapp = subapp(self) # type:ignore[call-arg]
else:
raise AssertionError("Invalid mappings for subcommand '%s'!" % subc)
# ... and finally initialize subapp.
self.subapp.initialize(argv)
def flatten_flags(self):
"""Flatten flags and aliases for loaders, so cl-args override as expected.
This prevents issues such as an alias pointing to InteractiveShell,
but a config file setting the same trait in TerminalInteraciveShell
getting inappropriate priority over the command-line arg.
Also, loaders expect ``(key: longname)`` and not ````key: (longname, help)`` items.
Only aliases with exactly one descendent in the class list
will be promoted.
"""
# build a tree of classes in our list that inherit from a particular
# it will be a dict by parent classname of classes in our list
# that are descendents
mro_tree = defaultdict(list)
for cls in self.classes:
clsname = cls.__name__
for parent in cls.mro()[1:-3]:
# exclude cls itself and Configurable,HasTraits,object
mro_tree[parent.__name__].append(clsname)
# flatten aliases, which have the form:
# { 'alias' : 'Class.trait' }
aliases: t.Dict[str, str] = {}
for alias, longname in self.aliases.items():
if isinstance(longname, tuple):
longname, _ = longname
cls, trait = longname.split(".", 1) # type:ignore[assignment]
children = mro_tree[cls] # type:ignore[index]
if len(children) == 1:
# exactly one descendent, promote alias
cls = children[0] # type:ignore[assignment]
if not isinstance(aliases, tuple):
alias = (alias,) # type:ignore[assignment]
for al in alias:
aliases[al] = ".".join([cls, trait]) # type:ignore[list-item]
# flatten flags, which are of the form:
# { 'key' : ({'Cls' : {'trait' : value}}, 'help')}
flags = {}
for key, (flagdict, help) in self.flags.items():
newflag: t.Dict[t.Any, t.Any] = {}
for cls, subdict in flagdict.items():
children = mro_tree[cls] # type:ignore[index]
# exactly one descendent, promote flag section
if len(children) == 1:
cls = children[0] # type:ignore[assignment]
if cls in newflag:
newflag[cls].update(subdict)
else:
newflag[cls] = subdict
if not isinstance(key, tuple):
key = (key,) # type:ignore[assignment]
for k in key:
flags[k] = (newflag, help)
return flags, aliases
def _create_loader(self, argv, aliases, flags, classes):
return KVArgParseConfigLoader(argv, aliases, flags, classes=classes, log=self.log)
@catch_config_error
def parse_command_line(self, argv=None):
"""Parse the command line arguments."""
assert not isinstance(argv, str)
argv = sys.argv[1:] if argv is None else argv
self.argv = [cast_unicode(arg) for arg in argv]
if argv and argv[0] == "help":
# turn `ipython help notebook` into `ipython notebook -h`
argv = argv[1:] + ["-h"]
if self.subcommands and len(argv) > 0:
# we have subcommands, and one may have been specified
subc, subargv = argv[0], argv[1:]
if re.match(r"^\w(\-?\w)*$", subc) and subc in self.subcommands:
# it's a subcommand, and *not* a flag or class parameter
return self.initialize_subcommand(subc, subargv)
# Arguments after a '--' argument are for the script IPython may be
# about to run, not IPython iteslf. For arguments parsed here (help and
# version), we want to only search the arguments up to the first
# occurrence of '--', which we're calling interpreted_argv.
try:
interpreted_argv = argv[: argv.index("--")]
except ValueError:
interpreted_argv = argv
if any(x in interpreted_argv for x in ("-h", "--help-all", "--help")):
self.print_help("--help-all" in interpreted_argv)
self.exit(0)
if "--version" in interpreted_argv or "-V" in interpreted_argv:
self.print_version()
self.exit(0)
# flatten flags&aliases, so cl-args get appropriate priority:
flags, aliases = self.flatten_flags()
classes = tuple(self._classes_with_config_traits())
loader = self._create_loader(argv, aliases, flags, classes=classes)
try:
self.cli_config = deepcopy(loader.load_config())
except SystemExit:
# traitlets 5: no longer print help output on error
# help output is huge, and comes after the error
raise
self.update_config(self.cli_config)
# store unparsed args in extra_args
self.extra_args = loader.extra_args
@classmethod
def _load_config_files(cls, basefilename, path=None, log=None, raise_config_file_errors=False):
"""Load config files (py,json) by filename and path.
yield each config object in turn.
"""
if not isinstance(path, list):
path = [path]
for path in path[::-1]:
# path list is in descending priority order, so load files backwards:
pyloader = cls.python_config_loader_class(basefilename + ".py", path=path, log=log)
if log:
log.debug("Looking for %s in %s", basefilename, path or os.getcwd())
jsonloader = cls.json_config_loader_class(basefilename + ".json", path=path, log=log)
loaded: t.List[t.Any] = []
filenames: t.List[str] = []
for loader in [pyloader, jsonloader]:
config = None
try:
config = loader.load_config()
except ConfigFileNotFound:
pass
except Exception:
# try to get the full filename, but it will be empty in the
# unlikely event that the error raised before filefind finished
filename = loader.full_filename or basefilename
# problem while running the file
if raise_config_file_errors:
raise
if log:
log.error("Exception while loading config file %s", filename, exc_info=True)
else:
if log:
log.debug("Loaded config file: %s", loader.full_filename)
if config:
for filename, earlier_config in zip(filenames, loaded):
collisions = earlier_config.collisions(config)
if collisions and log:
log.warning(
"Collisions detected in {0} and {1} config files."
" {1} has higher priority: {2}".format(
filename,
loader.full_filename,
json.dumps(collisions, indent=2),
)
)
yield (config, loader.full_filename)
loaded.append(config)
filenames.append(loader.full_filename)
@property
def loaded_config_files(self):
"""Currently loaded configuration files"""
return self._loaded_config_files[:]
@catch_config_error
def load_config_file(self, filename, path=None):
"""Load config files by filename and path."""
filename, ext = os.path.splitext(filename)
new_config = Config()
for (config, filename) in self._load_config_files(
filename,
path=path,
log=self.log,
raise_config_file_errors=self.raise_config_file_errors,
):
new_config.merge(config)
if (
filename not in self._loaded_config_files
): # only add to list of loaded files if not previously loaded
self._loaded_config_files.append(filename)
# add self.cli_config to preserve CLI config priority
new_config.merge(self.cli_config)
self.update_config(new_config)
def _classes_with_config_traits(self, classes=None):
"""
Yields only classes with configurable traits, and their subclasses.
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Thus, produced sample config-file will contain all classes
on which a trait-value may be overridden:
- either on the class owning the trait,
- or on its subclasses, even if those subclasses do not define
any traits themselves.
"""
if classes is None:
classes = self.classes
cls_to_config = OrderedDict(
(cls, bool(cls.class_own_traits(config=True)))
for cls in self._classes_inc_parents(classes)
)
def is_any_parent_included(cls):
return any(b in cls_to_config and cls_to_config[b] for b in cls.__bases__)
# Mark "empty" classes for inclusion if their parents own-traits,
# and loop until no more classes gets marked.
#
while True:
to_incl_orig = cls_to_config.copy()
cls_to_config = OrderedDict(
(cls, inc_yes or is_any_parent_included(cls))
for cls, inc_yes in cls_to_config.items()
)
if cls_to_config == to_incl_orig:
break
for cl, inc_yes in cls_to_config.items():
if inc_yes:
yield cl
def generate_config_file(self, classes=None):
"""generate default config file from Configurables"""
lines = ["# Configuration file for %s." % self.name]
lines.append("")
classes = self.classes if classes is None else classes
config_classes = list(self._classes_with_config_traits(classes))
for cls in config_classes:
lines.append(cls.class_config_section(config_classes))
return "\n".join(lines)
def close_handlers(self):
if getattr(self, "_logging_configured", False):
# don't attempt to close handlers unless they have been opened
# (note accessing self.log.handlers will create handlers if they
# have not yet been initialised)
for handler in self.log.handlers:
with suppress(Exception):
handler.close()
self._logging_configured = False
def exit(self, exit_status=0):
self.log.debug("Exiting application: %s" % self.name)
self.close_handlers()
sys.exit(exit_status)
def __del__(self):
self.close_handlers()
@classmethod
def launch_instance(cls, argv=None, **kwargs):
"""Launch a global instance of this Application
If a global instance already exists, this reinitializes and starts it
"""
app = cls.instance(**kwargs)
app.initialize(argv)
app.start()