def main():
parser = argparse.ArgumentParser(description='OGBN (GNN)')
parser.add_argument('--device', type=int, default=0)
parser.add_argument('--project', type=str, default='lcgnn')
parser.add_argument('--dataset', type=str, default='flickr')
parser.add_argument('--log_steps', type=int, default=1)
parser.add_argument('--num_layers', type=int, default=4)
parser.add_argument('--num_heads', type=int, default=2)
parser.add_argument('--ego_size', type=int, default=64)
parser.add_argument('--hidden_size', type=int, default=64)
parser.add_argument('--input_dropout', type=float, default=0.2)
parser.add_argument('--hidden_dropout', type=float, default=0.4)
parser.add_argument('--weight_decay', type=float, default=0.005)
parser.add_argument('--lr', type=float, default=0.001)
parser.add_argument('--epochs', type=int, default=500)
parser.add_argument('--early_stopping', type=int, default=50)
parser.add_argument('--batch_size', type=int, default=512)
parser.add_argument('--eval_batch_size', type=int, default=2048)
parser.add_argument('--layer_norm', type=int, default=0)
parser.add_argument('--src_scale', type=int, default=0)
parser.add_argument('--num_workers',
type=int,
default=4,
help='number of workers')
parser.add_argument('--pe_type', type=int, default=0)
parser.add_argument('--mask', type=int, default=0)
parser.add_argument('--mlp', type=int, default=0)
parser.add_argument("--optimizer",
type=str,
default='adamw',
choices=['adam', 'adamw'],
help="optimizer")
parser.add_argument("--scheduler",
type=str,
default='noam',
choices=['noam', 'linear'],
help="scheduler")
parser.add_argument("--method",
type=str,
default='acl',
choices=['acl', 'l1reg'],
help="method for local clustering")
parser.add_argument('--warmup', type=int, default=10000)
parser.add_argument('--seed', type=int, default=0)
parser.add_argument('--load_path', type=str, default='')
parser.add_argument('--exp_name', type=str, default='')
args = parser.parse_args()
print(args)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
torch.cuda.manual_seed(args.seed)
para_dic = {
'nl': args.num_layers,
'nh': args.num_heads,
'es': args.ego_size,
'hs': args.hidden_size,
'id': args.input_dropout,
'hd': args.hidden_dropout,
'bs': args.batch_size,
'pe': args.pe_type,
'op': args.optimizer,
'lr': args.lr,
'wd': args.weight_decay,
'ln': args.layer_norm,
'sc': args.src_scale,
'sd': args.seed,
'md': args.method
}
para_dic['warm'] = args.warmup
para_dic['mask'] = args.mask
exp_name = get_exp_name(args.dataset, para_dic, args.exp_name)
wandb_name = exp_name.replace('_sd' + str(args.seed), '')
wandb.init(name=wandb_name, project=args.project)
wandb.config.update(args)
device = f'cuda:{args.device}' if torch.cuda.is_available() else 'cpu'
device = torch.device(device)
if args.dataset == 'papers100M':
dataset = MyNodePropPredDataset(name=args.dataset)
elif args.dataset in ['flickr', 'reddit', 'yelp', 'amazon']:
dataset = SAINTDataset(name=args.dataset)
else:
dataset = PygNodePropPredDataset(name=f'ogbn-{args.dataset}')
split_idx = dataset.get_idx_split()
train_idx = set(split_idx['train'].cpu().numpy())
valid_idx = set(split_idx['valid'].cpu().numpy())
test_idx = set(split_idx['test'].cpu().numpy())
if args.method != "acl":
ego_graphs_unpadded = np.load(
f'data/{args.dataset}-lc-{args.method}-ego-graphs-{args.ego_size}.npy',
allow_pickle=True)
conds_unpadded = np.load(
f'data/{args.dataset}-lc-{args.method}-conds-{args.ego_size}.npy',
allow_pickle=True)
else:
tmp_ego_size = 256 if args.dataset == 'products' else args.ego_size
if args.ego_size < 64:
tmp_ego_size = 64
ego_graphs_unpadded = np.load(
f'data/{args.dataset}-lc-ego-graphs-{tmp_ego_size}.npy',
allow_pickle=True)
conds_unpadded = np.load(
f'data/{args.dataset}-lc-conds-{tmp_ego_size}.npy',
allow_pickle=True)
ego_graphs_train, ego_graphs_valid, ego_graphs_test = [], [], []
cut_train, cut_valid, cut_test = [], [], []
for i, x in enumerate(ego_graphs_unpadded):
idx = x[0]
assert len(x) == len(conds_unpadded[i])
if len(x) > args.ego_size:
x = x[:args.ego_size]
conds_unpadded[i] = conds_unpadded[i][:args.ego_size]
ego_graph = -np.ones(args.ego_size, dtype=np.int32)
ego_graph[:len(x)] = x
cut_position = np.argmin(conds_unpadded[i])
cut = np.zeros(args.ego_size, dtype=np.float32)
cut[:cut_position + 1] = 1.0
if idx in train_idx:
ego_graphs_train.append(ego_graph)
cut_train.append(cut)
elif idx in valid_idx:
ego_graphs_valid.append(ego_graph)
cut_valid.append(cut)
elif idx in test_idx:
ego_graphs_test.append(ego_graph)
cut_test.append(cut)
else:
print(f"{idx} not in train/valid/test idx")
ego_graphs_train, ego_graphs_valid, ego_graphs_test = torch.LongTensor(
ego_graphs_train), torch.LongTensor(
ego_graphs_valid), torch.LongTensor(ego_graphs_test)
cut_train, cut_valid, cut_test = torch.FloatTensor(
cut_train), torch.FloatTensor(cut_valid), torch.FloatTensor(cut_test)
pe = None
if args.pe_type == 1:
pe = torch.load(f'data/{args.dataset}-embedding-{args.hidden_size}.pt')
elif args.pe_type == 2:
pe = np.fromfile("data/paper100m.pro",
dtype=np.float32).reshape(-1, 128)
pe = torch.FloatTensor(pe)
if args.hidden_size < 128:
pe = pe[:, :args.hidden_size]
data = dataset[0]
if len(data.y.shape) == 1:
data.y = data.y.unsqueeze(1)
adj = None
if args.mask:
adj = torch.BoolTensor(~np.load(
f'data/{args.dataset}-ego-graphs-adj-{args.ego_size}.npy'))
num_classes = dataset.num_classes
train_dataset = NodeClassificationDataset(data.x, data.y, ego_graphs_train,
pe, args, num_classes, adj,
cut_train)
train_loader = DataLoader(train_dataset,
batch_size=args.batch_size,
shuffle=True,
num_workers=args.num_workers,
collate_fn=batcher(train_dataset),
pin_memory=True)
valid_dataset = NodeClassificationDataset(data.x, data.y, ego_graphs_valid,
pe, args, num_classes, adj,
cut_valid)
valid_loader = DataLoader(valid_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.num_workers,
collate_fn=batcher(valid_dataset),
pin_memory=True)
test_dataset = NodeClassificationDataset(data.x, data.y, ego_graphs_test,
pe, args, num_classes, adj,
cut_test)
test_loader = DataLoader(test_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.num_workers,
collate_fn=batcher(test_dataset),
pin_memory=True)
model = TransformerModel(data.x.size(1) + 1,
args.hidden_size,
args.num_heads,
args.hidden_size,
args.num_layers,
num_classes,
args.input_dropout,
args.hidden_dropout,
layer_norm=args.layer_norm,
src_scale=args.src_scale,
mlp=args.mlp).to(device)
wandb.watch(model, log='all')
if torch.cuda.device_count() > 1:
print("Let's use", torch.cuda.device_count(), "GPUs!")
# dim = 0 [30, xxx] -> [10, ...], [10, ...], [10, ...] on 3 GPUs
model = nn.DataParallel(model)
pytorch_total_params = sum(p.numel() for p in model.parameters()
if p.requires_grad)
print('model parameters:', pytorch_total_params)
if not os.path.exists('saved'):
os.mkdir('saved')
if torch.cuda.device_count() > 1:
model.module.init_weights()
else:
model.init_weights()
if args.load_path:
model.load_state_dict(torch.load(args.load_path,
map_location='cuda:0'))
valid_acc, valid_loss = test(model, valid_loader, device, args)
valid_output = f'Valid: {100 * valid_acc:.2f}% '
cor_train_acc, _ = test(model, train_loader, device, args)
cor_test_acc, cor_test_loss = test(model, test_loader, device, args)
train_output = f'Train: {100 * cor_train_acc:.2f}%, '
test_output = f'Test: {100 * cor_test_acc:.2f}%'
print(train_output + valid_output + test_output)
return
best_val_acc = 0
cor_train_acc = 0
cor_test_acc = 0
patience = 0
if args.optimizer == 'adam':
optimizer = torch.optim.Adam(model.parameters(),
lr=args.lr,
weight_decay=args.weight_decay)
elif args.optimizer == 'adamw':
optimizer = torch.optim.AdamW(model.parameters(),
lr=args.lr,
weight_decay=args.weight_decay)
else:
raise NotImplementedError
if args.warmup > 0:
if args.scheduler == 'noam':
optimizer = NoamOptim(
optimizer,
args.hidden_size if args.hidden_size > 0 else data.x.size(1),
n_warmup_steps=args.warmup) #, init_lr=args.lr)
elif args.scheduler == 'linear':
optimizer = LinearOptim(optimizer,
n_warmup_steps=args.warmup,
n_training_steps=args.epochs *
len(train_loader),
init_lr=args.lr)
for epoch in range(1, 1 + args.epochs):
# lp = LineProfiler()
# lp_wrapper = lp(train)
# loss = lp_wrapper(model, train_loader, device, optimizer, args)
# lp.print_stats()
loss = train(model, train_loader, device, optimizer, args)
train_output = valid_output = test_output = ''
if epoch >= 10 and epoch % args.log_steps == 0:
valid_acc, valid_loss = test(model, valid_loader, device, args)
valid_output = f'Valid: {100 * valid_acc:.2f}% '
if valid_acc > best_val_acc:
best_val_acc = valid_acc
# cor_train_acc, _ = test(model, train_loader, device, args)
cor_test_acc, cor_test_loss = test(model, test_loader, device,
args)
# train_output = f'Train: {100 * cor_train_acc:.2f}%, '
test_output = f'Test: {100 * cor_test_acc:.2f}%'
patience = 0
try:
if torch.cuda.device_count() > 1:
torch.save(model.module.state_dict(),
'saved/' + exp_name + '.pt')
else:
torch.save(model.state_dict(),
'saved/' + exp_name + '.pt')
wandb.save('saved/' + exp_name + '.pt')
except FileNotFoundError as e:
print(e)
else:
patience += 1
if patience >= args.early_stopping:
print('Early stopping...')
break
wandb.log({
'Train Loss': loss,
'Valid Acc': valid_acc,
'best_val_acc': best_val_acc,
'cor_test_acc': cor_test_acc,
'LR': get_lr(optimizer),
'Valid Loss': valid_loss,
'cor_test_loss': cor_test_loss
})
else:
wandb.log({'Train Loss': loss, 'LR': get_lr(optimizer)})
# train_output +
print(f'Epoch: {epoch:02d}, '
f'Loss: {loss:.4f}, ' + valid_output + test_output)
ntokens = len(input_vocab) # the size of vocabulary
nclstokens = 4 # D0, D1, S0, S1
ntagtokens = 1 # Binary classification O or D
emsize = 512 # embedding dimension
nhid = 512 # the dimension of the feedforward network model in nn.TransformerEncoder
nlayers = 6 # the number of nn.TransformerEncoderLayer in nn.TransformerEncoder
nhead = 8 # the number of heads in the multiheadattention models
dropout = 0.1 # the dropout value
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
transformer = TransformerModel(ntokens, nclstokens, ntagtokens, emsize, nhead,
nhid, nlayers, dropout)
if args.model:
transformer.load_state_dict(torch.load(args.model))
else:
# save random init model
torch.save(transformer.state_dict(), "init.mdl")
model = nn.DataParallel(transformer).to(device)
######################################################################
# Run the model
# -------------
#
cls_criterion = nn.CrossEntropyLoss()
lr = float(args.lr) # learning rate
optimizer = torch.optim.Adam(model.parameters(), lr=lr)
scheduler = torch.optim.lr_scheduler.StepLR(optimizer, 1.0, gamma=0.995)
import time