def run_main(lens_cat, lgal_cat, sagn_cat, sgal_cat):
# lens_cat = {}
# lgal_cat = {}
# sagn_cat = {}
# sgal_cat = {}
bsz = 10.0 # arcsec
nnn = 512
dsx = bsz / nnn #arcsec
dsi = 0.03
zl = lens_cat['zl']
zs = sagn_cat['zs']
xc1 = lens_cat['xc1']
xc2 = lens_cat['xc2']
re = re_sv(lens_cat['SigmaV'], zl, zs)
rc = 0.0
ql = lens_cat['ql']
phl = lens_cat['phl']
esh = lens_cat['ext_shear']
ash = lens_cat['ext_angle']
ekp = lens_cat['ext_kappa']
xi1, xi2 = make_r_coor(nnn, dsx)
ai1, ai2 = deflection_nie(xi1, xi2, xc1, xc2, re, rc, ql, phl, esh, ash,
ekp)
mua = pcs.call_alphas_to_mu(ai1, ai2, nnn, dsx)
yi1 = xi1 - ai1
yi2 = xi2 - ai2
#----------------------------------------------------------------------
# Lensed Point Sources
#
ys1 = sagn_cat['ys1']
ys2 = sagn_cat['ys2']
xroot1, xroot2, nroots = trf.roots_zeros(xi1, xi2, ai1, ai2, ys1, ys2)
muii = pcs.call_inverse_cic_single(mua, xroot1, xroot2, dsx)
#------------------------------------------------------------------------------
# Lensed Galaxies
#
ysc1 = ys1
ysc2 = ys2
sgal_img = loadin_sgal(sgal_cat)
lensed_sgal = lv4.call_ray_tracing(sgal_img, yi1, yi2, ysc1, ysc2, dsi)
#lensed_img = pcs.call_ray_tracing_single(ai1,ai2,nnn,bsz,zl)
#------------------------------------------------------------------------------
# Lens Galaxies
#
lgal_img = loadin_lgal(lgal_cat)
#------------------------------------------------------------------------------
# Stacking All images
#
res = stacking_points_and_galaxies(xroot1, xroot2, lroots[:, 70],
final_img, bsz, nnn)
return res
def point_ray_tracing(xi1,xi2,ai1,ai2,mu,spar):
g_limage = xi1*0.0
xroot1,xroot2,nroots = trf.roots_zeros(xi1,xi2,ai1,ai2,spar[0],spar[1])
idr1 = ((np.array(xroot1)+bsz/2.0-dsx/2.0)/dsx).astype('int')
idr2 = ((np.array(xroot2)+bsz/2.0-dsx/2.0)/dsx).astype('int')
g_limage[idr1,idr2] = g_limage[idr1,idr2] + spar[2]*np.abs(mua[idr1,idr2])
return g_limage
def point_ray_tracing(xi1, xi2, ai1, ai2, spar, bsz, nnn):
g_limage = xi1 * 0.0
dsx = bsz / nnn
xroot1, xroot2, nroots = trf.roots_zeros(xi1, xi2, ai1, ai2, spar[0],
spar[1])
idr1 = ((np.array(xroot1) + bsz / 2.0 - dsx / 2.0) / dsx).astype('int')
idr2 = ((np.array(xroot2) + bsz / 2.0 - dsx / 2.0) / dsx).astype('int')
g_limage[idr1, idr2] = spar[2]
return g_limage
def point_ray_tracing(xi1, xi2, ai1, ai2, mu, spar):
g_limage = xi1 * 0.0
xroot1, xroot2, nroots = trf.roots_zeros(xi1, xi2, ai1, ai2, spar[0],
spar[1])
idr1 = ((np.array(xroot1) + bsz / 2.0 - dsx / 2.0) / dsx).astype('int')
idr2 = ((np.array(xroot2) + bsz / 2.0 - dsx / 2.0) / dsx).astype('int')
g_limage[idr1,
idr2] = g_limage[idr1, idr2] + spar[2] * np.abs(mua[idr1, idr2])
return g_limage
def run_main():
#----------------------------------------------------------------------
SnapID = 135
HaloID = 50
zl = 0.5
zs = 2.0
nnn = 512
dm = il.snapshot.loadHalo(basePath, SnapID, HaloID, 'dm')
#npp = dm['count']
x1 = dm['Coordinates'][:, 0] #/1e3/(1.0+zl) # Mpc/h, comoving
x2 = dm['Coordinates'][:, 1] #/1e3/(1.0+zl) # Mpc/h, comoving
x3 = dm['Coordinates'][:, 2] #/1e3/(1.0+zl) # Mpc/h, comoving
ptnl_p = dm['Potential']
idx_ptnl_p_min = ptnl_p == ptnl_p.min()
xcp1 = x1[idx_ptnl_p_min]
xcp2 = x2[idx_ptnl_p_min]
xcp3 = x3[idx_ptnl_p_min]
bsz = 50.0 # kpc/h
sdens = read_sdens_from_illustris(dm, x1 - xcp1, x2 - xcp2, x3 - xcp3, bsz,
nnn)
#kappa = sdens/mm.sigma_crit(zl,zs)
#----------------------------------------------------------------------
bsz = bsz / 1e3 / mm.Da(zl) * mm.apr #arcsec
dsx = bsz / nnn #arcsec
xi1, xi2 = make_r_coor(nnn, dsx)
ai1, ai2 = pcs.call_cal_alphas0(sdens, nnn, bsz, zl, zs)
yi1 = xi1 - ai1
yi2 = xi2 - ai2
phi = pcs.call_cal_phi(sdens, nnn, bsz, zl, zs)
mua = pcs.call_alphas_to_mu(ai1, ai2, nnn, dsx)
#----------------------------------------------------------------------
ys1 = 0.0
ys2 = 0.0
xroot1, xroot2, nroots = trf.roots_zeros(xi1, xi2, ai1, ai2, ys1, ys2)
#pl.figure()
#pl.plot(ys1,ys2,'ko')
#pl.plot(xroot1,xroot2,'rs')
#pl.contour(xi1,xi2,mua)
#pl.contour(yi1,yi2,mua)
#pl.colorbar()
muii = pcs.call_inverse_cic_single(mua, xroot1, xroot2, dsx)
phii = pcs.call_inverse_cic_single(phi, xroot1, xroot2, dsx)
Kc = (1.0 + zl) / mm.vc * (mm.Da(zl) * mm.Da(zs) / mm.Da2(
zl, zs)) * mm.Mpc / (1e3 * mm.dy) / mm.apr / mm.apr
td = Kc * (0.5 * ((xroot1 - ys1)**2.0 + (xroot2 - ys2)**2.0) - phii)
time_days, mags = np.loadtxt("./SN_opsim.csv",
dtype='string',
delimiter=',',
usecols=(1, 4),
unpack=True)
time_days = time_days.astype("double")
ldays = np.zeros((nroots, len(time_days)))
#for i in xrange(nroots):
#ldays[i,:] = time_days+td[i]
ldays[0, :] = time_days + td[0]
ldays[1, :] = time_days + td[1]
ldays[2, :] = time_days + td[2]
mags = mags.astype("double")
lmags = np.zeros((nroots, len(time_days)))
#for i in xrange(nroots):
#lmags[i,:] = mags-2.5*np.log10(np.abs(muii[i]))
lmags[0, :] = mags - 2.5 * np.log10(np.abs(muii[0]))
lmags[1, :] = mags - 2.5 * np.log10(np.abs(muii[1]))
lmags[2, :] = mags - 2.5 * np.log10(np.abs(muii[2]))
cmap = mpl.cm.jet_r
#------------------------------------------------------------------------------
#linestyle=linestyle, color=color
pl.figure(figsize=(8, 8))
pl.xlabel("Days")
pl.ylabel("Mags")
pl.ylim(27, 21)
#for i in xrange(nroots):
#pl.plot(ldays[i,:]-49500+820,lmags[i,:],linestyle='-',color=cmap(i/float(nroots)))
pl.plot(ldays[0, :] - 49500 + 820, lmags[0, :], linestyle='-', color="r")
pl.plot(ldays[1, :] - 49500 + 820, lmags[1, :], linestyle='-', color="g")
pl.plot(ldays[2, :] - 49500 + 820, lmags[2, :], linestyle='-', color="b")
pl.figure(figsize=(8, 8))
pl.xlim(-5.0, 5.0)
pl.ylim(-5.0, 5.0)
pl.xlabel("arcsec")
pl.ylabel("arcsec")
#for i in xrange(nroots):
#pl.plot(xroot1[i],xroot2[i],marker='o',color=cmap(i/float(nroots)))
#markersize=10
pl.plot(xroot1[0], xroot2[0], marker='o', color="r", markersize=10)
pl.plot(xroot1[1], xroot2[1], marker='o', color="g", markersize=10)
pl.plot(xroot1[2], xroot2[2], marker='o', color="b", markersize=10)
pl.contour(xi1, xi2, mua, colors=('r', ))
pl.contour(yi1, yi2, mua, colors=('g', ))
pl.plot(ys1, ys2, 'ks')
print td
mua = pcs.call_alphas_to_mu(ai1, ai2, nnn, dsx)
#om10.plot_lens(lenses)
pl.figure()
pl.contour(xi1, xi2, mua)
pl.colorbar()
pl.figure()
pl.plot(spars[0], spars[1], 'ko')
pl.contour(xi1 - ai1, xi2 - ai2, mua)
pl.colorbar()
[ys1, ys2] = calculate_new_ys(ipars[0], ipars[1], ai1, ai2, dsx)
xrt1, xrt2, nrts = trf.roots_zeros(xi1, xi2, ai1, ai2, ys1, ys2)
#xrt1,xrt2,nrts = trf.roots_zeros(xi1,xi2,ai1,ai2,spars[0],spars[1])
#mui = pcs.call_inverse_cic_single(mua,xrt1,xrt2,dsx)
print nrts
#print mui
#print len(xrt1)
#print xrt1
mui = lenses.MAG[0]
ms = lenses.MAGI_IN[0]
lenses.NIMG[0] = nrts
muis = ms - 2.5 * np.log10(np.abs(mui[:nrts]))
lenses.XIMG[0][:] = 0.0
lenses.XIMG[0][:nrts] = xrt1
def run_main():
#----------------------------------------------------------------------
SnapID = 135
HaloID = 50
bsz = 200.0 # kpc/h
zl = 0.5
zs = 2.0
#zs0= 10.0
nnn = 512
dsi = 0.03
dm = il.snapshot.loadHalo(basePath, SnapID, HaloID, 'dm')
#npp = dm['count']
x1 = dm['Coordinates'][:, 0] #/1e3/(1.0+zl) # Mpc/h, comoving
x2 = dm['Coordinates'][:, 1] #/1e3/(1.0+zl) # Mpc/h, comoving
x3 = dm['Coordinates'][:, 2] #/1e3/(1.0+zl) # Mpc/h, comoving
ptnl_p = dm['Potential']
idx_ptnl_p_min = ptnl_p == ptnl_p.min()
xcp1 = x1[idx_ptnl_p_min]
xcp2 = x2[idx_ptnl_p_min]
xcp3 = x3[idx_ptnl_p_min]
sdens = read_sdens_from_illustris(dm, x1 - xcp1, x2 - xcp2, x3 - xcp3, bsz,
nnn)
#kappa = sdens/mm.sigma_crit(zl,zs)
#----------------------------------------------------------------------
bsz = bsz / 1e3 / mm.Da(zl) * mm.apr #arcsec
dsx = bsz / nnn #arcsec
print bsz
print dsx
xi1, xi2 = make_r_coor(nnn, dsx)
ai1, ai2 = pcs.call_cal_alphas0(sdens, nnn, bsz, zl, zs)
yi1 = xi1 - ai1
yi2 = xi2 - ai2
phi = pcs.call_cal_phi(sdens, nnn, bsz, zl, zs)
mua = pcs.call_alphas_to_mu(ai1, ai2, nnn, dsx)
#----------------------------------------------------------------------
ys1 = 0.0
ys2 = 0.0
xroot1, xroot2, nroots = trf.roots_zeros(xi1, xi2, ai1, ai2, ys1, ys2)
#pl.figure()
#pl.plot(ys1,ys2,'ko')
#pl.plot(xroot1,xroot2,'rs')
#pl.contour(xi1,xi2,mua)
#pl.contour(yi1,yi2,mua)
#pl.colorbar()
muii = pcs.call_inverse_cic_single(mua, xroot1, xroot2, dsx)
phii = pcs.call_inverse_cic_single(phi, xroot1, xroot2, dsx)
Kc = (1.0 + zl) / mm.vc * (mm.Da(zl) * mm.Da(zs) / mm.Da2(
zl, zs)) * mm.Mpc / (1e3 * mm.dy) / mm.apr / mm.apr
td = Kc * (0.5 * ((xroot1 - ys1)**2.0 + (xroot2 - ys2)**2.0) - phii)
time_days, mags = np.loadtxt("./SN_opsim.csv",
dtype='string',
delimiter=',',
usecols=(1, 4),
unpack=True)
time_days = time_days.astype("double")
#------------------------------------------------------------------------------
ldays = np.zeros((nroots, len(time_days)))
for i in xrange(nroots):
ldays[i, :] = time_days + td[i]
mags = mags.astype("double")
lmags = np.zeros((nroots, len(time_days)))
for i in xrange(nroots):
lmags[i, :] = mags - 2.5 * np.log10(np.abs(muii[i]))
#cmap = mpl.cm.jet_r
cmap = mpl.cm.gist_earth
pl.figure(figsize=(8, 8))
pl.xlabel("Days")
pl.ylabel("Mags")
pl.ylim(30, 22)
for i in xrange(nroots):
pl.plot(ldays[i, :] - 49500 + 31010 - 50,
lmags[i, :],
linestyle='-',
color=cmap(i / float(nroots)),
markersize=10)
#pl.plot(ldays[0,:]-49500+31010-50,lmags[0,:],linestyle='-',color="k")
#pl.plot(ldays[1,:]-49500+31010-50,lmags[1,:],linestyle='-',color="b")
#pl.plot(ldays[2,:]-49500+31010-50,lmags[2,:],linestyle='-',color="g")
#pl.plot(ldays[3,:]-49500+31010-50,lmags[3,:],linestyle='-',color="m")
#pl.plot(ldays[4,:]-49500+31010-50,lmags[4,:],linestyle='-',color="r")
pl.figure(figsize=(8, 8))
#pl.xlim(-bsz/2.0,bsz/2.0)
#pl.ylim(-bsz/2.0,bsz/2.0)
pl.xlim(-10.0, 10.0)
pl.ylim(-10.0, 10.0)
pl.xlabel("arcsec")
pl.ylabel("arcsec")
for i in xrange(nroots):
pl.plot(xroot1[i],
xroot2[i],
marker='o',
color=cmap(i / float(nroots)),
markersize=10)
#pl.plot(xroot1[0],xroot2[0],marker='o',color="k",markersize=15) #
#pl.plot(xroot1[1],xroot2[1],marker='o',color="b",markersize=15) #
#pl.plot(xroot1[2],xroot2[2],marker='o',color="g",markersize=15) #
#pl.plot(xroot1[3],xroot2[3],marker='o',color="m",markersize=15) #
#pl.plot(xroot1[4],xroot2[4],marker='o',color="r",markersize=15) #
pl.contour(xi1, xi2, mua, colors=('r', ))
pl.contour(yi1, yi2, mua, colors=('g', ))
pl.plot(ys1, ys2, 'cs')
print td
#------------------------------------------------------------------------------
ysc1 = 0.0
ysc2 = 0.0
g_source = pyfits.getdata(
"./dry_run_pipeline/439.0_149.482739_1.889989_processed.fits")
g_source = np.array(g_source, dtype="<d")
pl.figure()
pl.contourf(g_source)
pl.colorbar()
std_srcs = np.std(g_source)
print std_srcs, std_srcs * 4.0
gthhd = 6.0 * std_srcs
g_source = g_source - gthhd
g_source[g_source <= 0.0] = 0.0
lensed_img = lv4.call_ray_tracing(g_source, yi1, yi2, ysc1, ysc2, dsi)
#lensed_img = pcs.call_ray_tracing_single(ai1,ai2,nnn,bsz,zl)
lenses_img = slf.loadin_fits(HaloID, zl, bsz, nnn)
lroots = 10.0**((lmags - 25.523) / (-2.5))
final_img = lensed_img + lenses_img / 100.0
res = stacking_points_and_galaxies(xroot1, xroot2, lroots[:, 70],
final_img, bsz, nnn)
pl.figure()
pl.contourf(xi1, xi2, res)
pl.colorbar()
pyfits.writeto("all.fits", res, clobber=True)
return res
def main():
zl = 0.17
zs = 3.0
sigmav = 600 #km/s
re0 = aa.re_sv(sigmav,zl,zs)
me0 = aa.m200_sv(sigmav,zl)
#zs_arr = np.linspace(zl,10.0,100)
#re_arr = zs_arr*0.0
#for i in xrange(len(zs_arr)):
#re_arr[i] = aa.re_sv(sigmav,zl,zs_arr[i])
#pl.figure()
#pl.plot(zs_arr,re_arr,'-')
nrbins = 5
nnn = 128*nrbins
#dsx = boxsize/nnn
dsx = 0.396/nrbins # arcsec
bsz = dsx*nnn # in the units of Einstein Radius
print re0,me0,bsz
#nnn = 512
#bsz = 40 # in the units of Einstein Radius
#dsx = bsz/nnn # arcsec
xx01 = np.linspace(-bsz/2.0,bsz/2.0,nnn)+0.5*dsx
xx02 = np.linspace(-bsz/2.0,bsz/2.0,nnn)+0.5*dsx
xi2,xi1 = np.meshgrid(xx01,xx02)
#----------------------------------------------------------------------
xc1 = 0.0 #x coordinate of the center of lens (in units of Einstein radius).
xc2 = 0.0 #y coordinate of the center of lens (in units of Einstein radius).
q = 0.7 #Ellipticity of lens.
rc = 0.0 #Core size of lens (in units of Einstein radius).
re = re0 #Einstein radius of lens.
pha = 5.0 #Orintation of lens.
lpar = np.asarray([xc1,xc2,q,rc,re,pha])
#----------------------------------------------------------------------
ai1,ai2,mua = lens_equation_sie(xi1,xi2,lpar)
yi1 = xi1-ai1
yi2 = xi2-ai2
#pl.figure()
#pl.contour(xi2,xi1,mua)
#pl.colorbar()
#pl.figure()
#pl.contour(yi2,yi1,mua)
#pl.colorbar()
mags_of_sources = 100.0
#ys1 = 0.85
#ys2 = -0.22
#ys11 = ys1
#ys12 = ys2
#xroot1,xroot2,nroots = trf.roots_zeros(xi1,xi2,ai1,ai2,ys1,ys2)
#idr1 = ((np.array(xroot1)+bsz/2.0-dsx/2.0)/dsx).astype('int')
#idr2 = ((np.array(xroot2)+bsz/2.0-dsx/2.0)/dsx).astype('int')
g_limage = xi1*0.0
#g_limage[idr1,idr2] = mags_of_sources*np.abs(mua[idr1,idr2])
ys1 = 0.67
ys2 = 0.75
ys21 = ys1
ys22 = ys2
xroot1,xroot2,nroots = trf.roots_zeros(xi1,xi2,ai1,ai2,ys1,ys2)
#pl.figure()
#pl.xlim(-bsz/2,bsz/2)
#pl.ylim(-bsz/2,bsz/2)
#pl.plot(ys11,ys12,'wo')
#pl.plot(ys21,ys22,'yo')
idr1 = ((np.array(xroot1)+bsz/2.0-dsx/2.0)/dsx).astype('int')
idr2 = ((np.array(xroot2)+bsz/2.0-dsx/2.0)/dsx).astype('int')
g_limage[idr1,idr2] = g_limage[idr1,idr2] + mags_of_sources*np.abs(mua[idr1,idr2])
#pl.figure()
#pl.contourf(g_limage)
#pl.colorbar()
#pl.figure()
#pl.contour(yi1,yi2,mua)
#pl.colorbar()
#print xroot1,xroot2
#pl.figure(figsize=(10,10))
#pl.xlim(-2.0,2.0)
#pl.ylim(-2.0,2.0)
#pl.plot(xroot1,xroot2,'go')
#pl.plot(ys1,ys2,'ko')
#----------------------------------------------------------------------
g_amp = 0.1*re # peak brightness value
g_sig = 300.*re # Gaussian "sigma" (i.e., size)
g_xcen = xc1 # x position of center (also try (0.0,0.14)
g_ycen = xc2 # y position of center
g_axrat = q # minor-to-major axis ratio
g_pa = pha+90 # major-axis position angle (degrees) c.c.w. from x axis
gpar = np.asarray([g_amp,g_sig,g_xcen,g_ycen,g_axrat,g_pa])
#----------------------------------------------------------------------
#g_simage = gauss_2d(xi1,xi2,gpar) # modeling source as 2d Gaussian with input parameters.
g_lensimage = gauss_2d(xi1,xi2,gpar)
g_limage = g_limage + g_lensimage/3.0/nrbins**2.0
#pl.figure()
#pl.contourf(g_lensimage)
#pl.colorbar()
#file_psf = "./sdsspsf.fits"
#g_psf = pyfits.getdata(file_psf)-1000.0
#g_psf = g_psf/np.sum(g_psf)
#g_psf = congrid.congrid(g_psf,[np.shape(g_psf)[0]*nrbins,np.shape(g_psf)[1]*nrbins])
#g_psf = sil.RectBivariateSpline(g_psf,
#bbox=[np.shape(g_psf)[0]*nrbins,np.shape(g_psf)[1]*nrbins,np.shape(g_psf)[0]*nrbins,np.shape(g_psf)[1]*nrbins], kx=3, ky=3, s=0)
#print np.shape(g_psf),np.max(g_lensimage)
#pl.figure()
##pl.contourf(g_limage)
##pl.colorbar()
#pl.plot(ys11,ys12,'wo')
#pl.plot(ys21,ys22,'yo')
#file_noise = "./sdssgal.fits"
#g_noise = pyfits.getdata(file_noise)-1000.0
#g_limage = ss.fftconvolve(g_limage,g_psf,mode="same")
#file_noise = "./sdssgal.fits"
#g_noise = pyfits.getdata(file_noise)-1000.0
nstd = 0.5001
g_noise=nstd*np.random.normal(0.0,1.0,(nnn,nnn))
g_limage = gaussian_filter(g_limage,5)
##pl.figure()
##pl.contourf(g_limage)
#pl.colorbar()
g_limage = g_limage+g_noise
output_filename = "./test.fits"
pyfits.writeto(output_filename,g_limage,clobber=True)
return 0