def launch(self, data_file, **kwargs):
try:
parser = NetworkxParser(self.storage_path, **kwargs)
net = networkx.read_gpickle(data_file)
connectivity = parser.parse(net)
return [connectivity]
except ParseException, excep:
self.log.exception("Could not process Connectivity")
raise LaunchException(excep)
def launch(self, view_model):
# type: (NetworkxImporterModel) -> [ConnectivityIndex]
try:
parser = NetworkxParser(view_model)
net = pandas.read_pickle(view_model.data_file)
connectivity = parser.parse(net)
return h5.store_complete(connectivity, self.storage_path)
except ParseException as excep:
self.log.exception("Could not process Connectivity")
raise LaunchException(excep)
def _parse_connectome_network(self, connectome_network, warning_message, **kwargs):
"""
Parse data from a NetworkX object and save it in Connectivity DataTypes.
"""
connectivities = []
parser = NetworkxParser(self.storage_path, **kwargs)
for net in connectome_network:
try:
net.load()
connectivity = parser.parse(net.data)
connectivity.user_tag_1 = connectivity.weights.shape[0]
connectivities.append(connectivity)
except ParseException:
self.logger.exception("Could not process Connectivity")
warning_message += "Problem when importing Connectivities!! \n"
return connectivities
