def initialize_profile(self, change_logger_in_dev=True):
"""
Specific initialization when functioning with storage
"""
super(WebSettingsProfile, self).initialize_profile()
if change_logger_in_dev and self.env.is_development():
self.LOGGER_CONFIG_FILE_NAME = "dev_logger_config.conf"
## Make sure DB events are linked.
from tvb.core.traits import db_events
db_events.attach_db_events()
def initialize_profile(self, change_logger_in_dev=True):
"""
Specific initialization when functioning with storage
"""
super(WebSettingsProfile, self).initialize_profile()
if change_logger_in_dev and not self.env.is_distribution():
self.LOGGER_CONFIG_FILE_NAME = "dev_logger_config.conf"
## Make sure DB events are linked.
from tvb.core.traits import db_events
db_events.attach_db_events()
def initialize(introspected_modules, load_xml_events=True):
"""
Initialize when Application is starting.
Check for new algorithms or new DataTypes.
"""
SettingsService().check_db_url(cfg.DB_URL)
## Initialize DB
is_db_empty = initialize_startup()
## Create Projects storage root in case it does not exist.
initialize_storage()
## Populate DB algorithms, by introspection
event_folders = []
start_introspection_time = datetime.datetime.now()
for module in introspected_modules:
introspector = Introspector(module)
# Introspection is always done, even if DB was not empty.
introspector.introspect(True)
event_path = introspector.get_events_path()
if event_path:
event_folders.append(event_path)
# Now remove any unverified Algo-Groups, categories or Portlets
invalid_stored_entities = dao.get_non_validated_entities(
start_introspection_time)
for entity in invalid_stored_entities:
dao.remove_entity(entity.__class__, entity.id)
## Populate events
if load_xml_events:
eventhandler.read_events(event_folders)
## Make sure DB events are linked.
db_events.attach_db_events()
## Create default users.
if is_db_empty:
dao.store_entity(
model.User(cfg.SYSTEM_USER_NAME, None, None, True, None))
UserService().create_user(username=cfg.ADMINISTRATOR_NAME,
password=cfg.ADMINISTRATOR_PASSWORD,
email=cfg.ADMINISTRATOR_EMAIL,
role=ROLE_ADMINISTRATOR)
## In case actions related to latest code-changes are needed, make sure they are executed.
CodeUpdateManager().update_all()
def initialize_profile(self, change_logger_in_dev=True):
"""
Specific initialization when functioning with storage
"""
super(WebSettingsProfile, self).initialize_profile()
if change_logger_in_dev and self.env.is_development():
self.LOGGER_CONFIG_FILE_NAME = "dev_logger_config.conf"
## Make sure DB events are linked.
from tvb.core.traits import db_events
db_events.attach_db_events()
from tvb.basic.logger.builder import get_logger
from tvb.interfaces.web.mplh5 import mplh5_server
log = get_logger('tvb.interfaces.web.mplh5.mplh5_server')
mplh5_server.start_server(log)
def initialize_profile(self, change_logger_in_dev=True):
"""
Specific initialization when functioning with storage
"""
super(WebSettingsProfile, self).initialize_profile()
if change_logger_in_dev and self.env.is_development():
self.LOGGER_CONFIG_FILE_NAME = "dev_logger_config.conf"
## Make sure DB events are linked.
from tvb.core.traits import db_events
db_events.attach_db_events()
from tvb.basic.logger.builder import get_logger
from tvb.interfaces.web.mplh5 import mplh5_server
log = get_logger('tvb.interfaces.web.mplh5.mplh5_server')
mplh5_server.start_server(log)
def initialize(introspected_modules, load_xml_events=True):
"""
Initialize when Application is starting.
Check for new algorithms or new DataTypes.
"""
SettingsService().check_db_url(cfg.DB_URL)
## Initialize DB
is_db_empty = initialize_startup()
## Create Projects storage root in case it does not exist.
initialize_storage()
## Populate DB algorithms, by introspection
event_folders = []
start_introspection_time = datetime.datetime.now()
for module in introspected_modules:
introspector = Introspector(module)
# Introspection is always done, even if DB was not empty.
introspector.introspect(True)
event_path = introspector.get_events_path()
if event_path:
event_folders.append(event_path)
# Now remove any unverified Algo-Groups, categories or Portlets
invalid_stored_entities = dao.get_non_validated_entities(start_introspection_time)
for entity in invalid_stored_entities:
dao.remove_entity(entity.__class__, entity.id)
## Populate events
if load_xml_events:
read_events(event_folders)
## Make sure DB events are linked.
db_events.attach_db_events()
## Create default users.
if is_db_empty:
dao.store_entity(model.User(cfg.SYSTEM_USER_NAME, None, None, True, None))
UserService().create_user(username=cfg.ADMINISTRATOR_NAME, password=cfg.ADMINISTRATOR_PASSWORD,
email=cfg.ADMINISTRATOR_EMAIL, role=model.ROLE_ADMINISTRATOR)
## In case actions related to latest code-changes are needed, make sure they are executed.
CodeUpdateManager().update_all()
LOGGER.debug("Importing Algorithm: " + str(algorithm_group.classname) +
" for Operation:" + str(curent_operation.id))
PARAMS = parse_json_parameters(curent_operation.parameters)
adapter_instance = ABCAdapter.build_adapter(algorithm_group)
## Un-comment bellow for profiling an operation:
## import cherrypy.lib.profiler as profiler
## p = profiler.Profiler("/Users/lia.domide/TVB/profiler/")
## p.run(OperationService().initiate_prelaunch, curent_operation, adapter_instance, {}, **PARAMS)
OperationService().initiate_prelaunch(curent_operation,
adapter_instance, {}, **PARAMS)
LOGGER.debug("Successfully finished operation " + str(operation_id))
except Exception, excep:
LOGGER.error("Could not execute operation " + str(sys.argv[1]))
LOGGER.exception(excep)
parent_burst = dao.get_burst_for_operation_id(operation_id)
if parent_burst is not None:
WorkflowService().mark_burst_finished(parent_burst,
error=True,
error_message=str(excep))
if __name__ == '__main__':
OPERATION_ID = sys.argv[1]
# Make sure DB events are linked.
db_events.attach_db_events()
do_operation_launch(OPERATION_ID)
sys.exit(0)
LOGGER.debug("Importing Algorithm: " + str(algorithm_group.classname) +
" for Operation:" + str(curent_operation.id))
PARAMS = parse_json_parameters(curent_operation.parameters)
adapter_instance = ABCAdapter.build_adapter(algorithm_group)
## Un-comment bellow for profiling an operation:
## import cherrypy.lib.profiler as profiler
## p = profiler.Profiler("/Users/lia.domide/TVB/profiler/")
## p.run(OperationService().initiate_prelaunch, curent_operation, adapter_instance, {}, **PARAMS)
OperationService().initiate_prelaunch(curent_operation, adapter_instance, {}, **PARAMS)
LOGGER.debug("Successfully finished operation " + str(operation_id))
except Exception, excep:
LOGGER.error("Could not execute operation " + str(sys.argv[1]))
LOGGER.exception(excep)
parent_burst = dao.get_burst_for_operation_id(operation_id)
if parent_burst is not None:
WorkflowService().mark_burst_finished(parent_burst, error=True, error_message=str(excep))
if __name__ == '__main__':
OPERATION_ID = sys.argv[1]
# Make sure DB events are linked.
db_events.attach_db_events()
do_operation_launch(OPERATION_ID)
sys.exit(0)