def setup_main_panel(self):
"""
Lays Out Main Panel. Binds some functions to presenter.
:return: None
"""
# Create Status Bar
self.CreateStatusBar(7)
self.SetStatusWidths([-1, 300, 200, 200, 250, 150, 130])
# Sizers to develop layout
# s1 = (min(self.displaysize[0], 1851), self.displaysize[1])
# s2 = (550, self.displaysize[1])
splitterwindow = wx.SplitterWindow(self,
-1,
style=wx.SP_3D | wx.SP_BORDER)
splitterwindow2 = wx.SplitterWindow(splitterwindow,
-1,
style=wx.SP_3D | wx.SP_BORDER)
panelp = wx.Panel(splitterwindow2, -1)
panel = scrolled.ScrolledPanel(splitterwindow2,
-1) # wx.Panel(splitterwindow2, -1)
splitterwindow2.SplitVertically(panelp,
panel,
sashPosition=-250 -
self.config.imflag * 20)
splitterwindow2.SetMinimumPaneSize(175)
splitterwindow.SetMinimumPaneSize(175)
# splitterwindow.SetMinSize((0,0))
# splitterwindow2.SetMinSize((0,0))
file_drop_target = MyFileDropTarget(self)
splitterwindow.SetDropTarget(file_drop_target)
# .................................
#
# Layout the Plots
#
# ...................................
# Tabbed view of plots
if self.tabbed == 1:
figsize = (6, 5)
plotwindow = wx.Notebook(splitterwindow)
splitterwindow.SplitVertically(plotwindow,
splitterwindow2,
sashPosition=-550)
tab1 = wx.Panel(plotwindow)
tab2 = wx.Panel(plotwindow)
tab3 = wx.Panel(plotwindow)
tab4 = wx.Panel(plotwindow)
tab5 = wx.Panel(plotwindow)
tab6 = wx.Panel(plotwindow)
self.plot1 = plot1d.Plot1d(tab1, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(tab2, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(tab3, figsize=figsize)
self.plot4 = plot1d.Plot1d(tab4, figsize=figsize)
self.plot5 = plot2d.Plot2d(tab5, figsize=figsize)
self.plot6 = plot1d.Plot1d(tab6, figsize=figsize)
miscwindows.setup_tab_box(tab1, self.plot1)
miscwindows.setup_tab_box(tab2, self.plot2)
miscwindows.setup_tab_box(tab3, self.plot3)
miscwindows.setup_tab_box(tab4, self.plot4)
miscwindows.setup_tab_box(tab5, self.plot5)
miscwindows.setup_tab_box(tab6, self.plot6)
if self.config.imflag == 1:
tab1im = wx.Panel(plotwindow)
tab1fit = wx.Panel(plotwindow)
tab2ccs = wx.Panel(plotwindow)
tab3color = wx.Panel(plotwindow)
tab5mccs = wx.Panel(plotwindow)
tab5ccsz = wx.Panel(plotwindow)
tab9 = wx.Panel(plotwindow)
tab10 = wx.Panel(plotwindow)
self.plot1im = plot2d.Plot2d(tab1im, figsize=figsize)
self.plot1fit = plot2d.Plot2d(tab1fit, figsize=figsize)
self.plot2ccs = plot1d.Plot1d(tab2ccs, figsize=figsize)
self.plot5mccs = plot2d.Plot2d(tab5mccs, figsize=figsize)
self.plot5ccsz = plot2d.Plot2d(tab5ccsz, figsize=figsize)
self.plot3color = ColorPlot.ColorPlot2D(tab3color,
figsize=figsize)
self.plot9 = plot3d.CubePlot(tab9, figsize=figsize)
self.plot10 = plot3d.CubePlot(tab10, figsize=figsize)
miscwindows.setup_tab_box(tab1im, self.plot1im)
miscwindows.setup_tab_box(tab1fit, self.plot1fit)
miscwindows.setup_tab_box(tab2ccs, self.plot2ccs)
miscwindows.setup_tab_box(tab3color, self.plot3color)
miscwindows.setup_tab_box(tab5mccs, self.plot5mccs)
miscwindows.setup_tab_box(tab5ccsz, self.plot5ccsz)
miscwindows.setup_tab_box(tab9, self.plot9)
miscwindows.setup_tab_box(tab10, self.plot10)
plotwindow.AddPage(tab1, "MS Data v. Fit")
if self.config.imflag == 1:
plotwindow.AddPage(tab1im, "IM-MS Data")
plotwindow.AddPage(tab1fit, "IM-MS Fit")
plotwindow.AddPage(tab3color, "IM-MS Charges")
plotwindow.AddPage(tab9, "m/z Cube")
plotwindow.AddPage(tab3, "m/z Grid")
plotwindow.AddPage(tab2, "Mass Distribution")
if self.config.imflag == 1:
plotwindow.AddPage(tab2ccs, "CCS Distribution")
plotwindow.AddPage(tab4, "Individual Peaks")
plotwindow.AddPage(tab5, "Mass vs. Charge")
if self.config.imflag == 1:
plotwindow.AddPage(tab5mccs, "Mass vs. CCS ")
plotwindow.AddPage(tab5ccsz, "CCS vs. Charge")
plotwindow.AddPage(tab10, "Mass Cube")
plotwindow.AddPage(tab6, "Bar Chart")
# Scrolled panel view of plots
else:
# TODO: Line up plots on left hand side so that they share an m/z axis
plotwindow = scrolled.ScrolledPanel(splitterwindow)
splitterwindow.SplitVertically(plotwindow,
splitterwindow2,
sashPosition=-550)
sizerplot = wx.GridBagSizer()
figsize = self.config.figsize
self.plot1 = plot1d.Plot1d(plotwindow, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(plotwindow,
integrate=1,
figsize=figsize)
self.plot3 = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot4 = plot1d.Plot1d(plotwindow, figsize=figsize)
self.plot5 = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot6 = plot1d.Plot1d(plotwindow, figsize=figsize)
if self.config.imflag == 1:
self.plot1im = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot1fit = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot2ccs = plot1d.Plot1d(plotwindow, figsize=figsize)
self.plot5mccs = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot5ccsz = plot2d.Plot2d(plotwindow, figsize=figsize)
self.plot3color = ColorPlot.ColorPlot2D(plotwindow,
figsize=figsize)
self.plot9 = plot3d.CubePlot(plotwindow, figsize=figsize)
self.plot10 = plot3d.CubePlot(plotwindow, figsize=figsize)
if self.config.imflag == 0:
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2, (0, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot3, (1, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot4, (1, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot6, (2, 1), span=(1, 1), flag=wx.EXPAND)
else:
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot1im, (0, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot1fit, (1, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot3color, (1, 0),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot2, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2ccs, (3, 0),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot3, (2, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot4, (4, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (3, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5mccs, (4, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot5ccsz, (5, 1),
span=(1, 1),
flag=wx.EXPAND)
sizerplot.Add(self.plot6, (5, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot9, (6, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot10, (6, 1), span=(1, 1), flag=wx.EXPAND)
# plotwindow.SetScrollbars(1, 1,1,1)
if self.system == "Linux":
plotwindow.SetSizer(sizerplot)
sizerplot.Fit(self)
else:
plotwindow.SetSizerAndFit(sizerplot)
plotwindow.SetupScrolling()
self.plots = [
self.plot1, self.plot2, self.plot3, self.plot4, self.plot5,
self.plot6
]
if self.config.imflag == 1:
self.plots = self.plots + [
self.plot1im, self.plot1fit, self.plot2ccs, self.plot5mccs,
self.plot5ccsz, self.plot3color, self.plot9, self.plot10
]
self.plotnames = [
"Figure1", "Figure2", "Figure3", "Figure4", "Figure5", "Figure6"
]
if self.config.imflag == 1:
self.plotname = self.plotnames + [
"Figure1im", "Figure1fit", "Figure2ccs", "Figure3color",
"Figure5ccsz", "Figure5massccs", "mzCube", "massCube"
]
# ...........................
#
# Sizer for Peaks
#
# ...........................
sizerpeaks = wx.BoxSizer(wx.VERTICAL)
self.peakpanel = peaklistsort.PeakListCtrlPanel(panelp)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_delete,
self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE, self.pres.on_charge_states,
self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences,
self.peakpanel)
sizerpeaks.Add(self.peakpanel, 0, wx.EXPAND)
panelp.SetSizer(sizerpeaks)
sizerpeaks.Fit(self)
# ..........................
#
# Setup Control Panel
#
# .............................
sizercontrols = wx.BoxSizer(wx.VERTICAL)
self.controls = ud_controls.main_controls(self, self.config, self.pres,
panel, self.icon_path)
sizercontrols.Add(self.controls, 1, wx.EXPAND)
panel.SetSizer(sizercontrols)
sizercontrols.Fit(self)
# panel.SetAutoLayout(1)
# panel.SetupScrolling(scroll_x=False, scroll_y=True)
if self.system == "Linux" and self.tabbed != 1:
sizerplot.Fit(splitterwindow)
sizer = wx.BoxSizer(wx.HORIZONTAL)
sizer.Add(splitterwindow, 1, wx.EXPAND)
# Set everything up
self.SetSizer(sizer)
sizer.Fit(self)
pass
def setupmainpanel(self):
sizer = wx.BoxSizer(wx.HORIZONTAL)
panel = wx.Panel(self)
file_drop_target = MyFileDropTarget(self)
panel.SetDropTarget(file_drop_target)
self.ypanel = ListCtrlPanel(panel, self.pres, size=(300, 300))
sizer.Add(self.ypanel, 0, wx.EXPAND)
# Tabbed view of plots
if self.tabbed == 1:
figsize = (6, 5)
plotwindow = wx.Notebook(panel)
tab1 = wx.Panel(plotwindow)
tab2 = wx.Panel(plotwindow)
tab3 = wx.Panel(plotwindow)
tab5 = wx.Panel(plotwindow)
tab6 = wx.Panel(plotwindow)
tab7 = wx.Panel(plotwindow)
tab8 = wx.Panel(plotwindow)
tab9 = wx.Panel(plotwindow)
self.plot1 = plot1d.Plot1d(tab1, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(tab2, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(tab3, figsize=figsize)
self.plot5 = plot2d.Plot2d(tab5, figsize=figsize)
self.plot6 = plot1d.Plot1d(tab6, figsize=figsize)
self.plot7 = plot1d.Plot1d(tab7, figsize=figsize)
self.plot8 = plot2d.Plot2d(tab8, figsize=figsize)
self.plot9 = plot1d.Plot1d(tab9, figsize=figsize)
miscwindows.setup_tab_box(tab1, self.plot1)
miscwindows.setup_tab_box(tab2, self.plot2)
miscwindows.setup_tab_box(tab3, self.plot3)
miscwindows.setup_tab_box(tab5, self.plot5)
miscwindows.setup_tab_box(tab6, self.plot6)
miscwindows.setup_tab_box(tab7, self.plot7)
miscwindows.setup_tab_box(tab8, self.plot8)
miscwindows.setup_tab_box(tab9, self.plot9)
plotwindow.AddPage(tab1, "MS Data")
plotwindow.AddPage(tab9, "Charge Distributions")
plotwindow.AddPage(tab2, "Mass Distribution")
plotwindow.AddPage(tab7, "Extracts Line Plot")
plotwindow.AddPage(tab8, "Extracts Grid Plot")
plotwindow.AddPage(tab6, "Bar Chart")
plotwindow.AddPage(tab3, "m/z Grid")
plotwindow.AddPage(tab5, "Mass vs. Charge")
sizer.Add(plotwindow, 1, wx.EXPAND)
else:
self.plotpanel = scrolled.ScrolledPanel(panel)
sizerplot = wx.GridBagSizer()
figsize = self.config.figsize
self.plot1 = plot1d.Plot1d(self.plotpanel, smash=1, figsize=figsize)
self.plot2 = plot1d.Plot1d(self.plotpanel, integrate=1, figsize=figsize)
self.plot3 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot5 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot6 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
self.plot7 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
self.plot8 = plot2d.Plot2d(self.plotpanel, figsize=figsize)
self.plot9 = plot1d.Plot1d(self.plotpanel, figsize=figsize)
sizerplot.Add(self.plot1, (0, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot9, (0, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot2, (1, 0), span=(1, 2), flag=wx.EXPAND)
sizerplot.Add(self.plot6, (3, 0), span=(1, 2), flag=wx.EXPAND)
sizerplot.Add(self.plot7, (2, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot8, (2, 1), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot3, (4, 0), span=(1, 1), flag=wx.EXPAND)
sizerplot.Add(self.plot5, (4, 1), span=(1, 1), flag=wx.EXPAND)
self.plotpanel.SetSizerAndFit(sizerplot)
self.plotpanel.SetupScrolling()
sizer.Add(self.plotpanel, 1, wx.EXPAND)
self.plots = [self.plot1, self.plot2, self.plot6, self.plot7, self.plot8, self.plot9, self.plot3, self.plot5]
self.plotnames = ["MetaFigure1", "MetaFigure2", "MetaFigure3", "MetaFigure4", "MetaFigure5", "MetaFigure6",
"MeatFigure7", "MetaFigure8"]
self.peakpanel = peaklistsort.PeakListCtrlPanel(panel, meta=True)
self.Bind(self.peakpanel.EVT_DELETE_SELECTION_2, self.pres.on_delete, self.peakpanel)
self.Bind(self.peakpanel.EVT_CHARGE_STATE, self.pres.on_charge_states_mud, self.peakpanel)
self.Bind(self.peakpanel.EVT_DIFFERENCES, self.pres.on_differences, self.peakpanel)
self.Bind(self.peakpanel.EVT_MASSES, self.pres.on_label_masses, self.peakpanel)
sizer.Add(self.peakpanel, 0, wx.EXPAND)
self.controls = main_controls(self, self.config, self.pres, panel, self.icon_path)
sizer.Add(self.controls, 0, wx.EXPAND)
# Set everything up
panel.SetSizer(sizer)
sizer.Fit(self)
self.CreateStatusBar(7)
self.SetStatusWidths([-1, 600, 120, 0, 230, 250, 130])