def parse_authors(paper_dict, max_authors=4):
raw_authors = [utf8totex(x) for x in paper_dict['authors']]
show_authors = raw_authors[:max_authors]
if any(['price-whelan' in x.lower() for x in show_authors]):
# Bold my name because it makes the cut to be shown
names = []
for name in show_authors:
if 'price-whelan' in name.lower():
name = '\\textbf{Price-Whelan,~A.~M.}'
else:
name = format_name(name)
names.append(name)
author_tex = '; '.join(names)
if len(show_authors) < len(raw_authors): # use et al.
author_tex = author_tex + "~\\textit{et al.}"
else:
# Add "incl. APW" after et al., because I'm buried in the author list
author_tex = "{0}".format(format_name(show_authors[0]))
author_tex += "~\\textit{et al.}~(incl. \\textbf{APW})"
return author_tex
def parse_authors(paper_dict, max_authors=4):
raw_authors = [utf8totex(x) for x in paper_dict['authors']]
show_authors = raw_authors[:max_authors]
if any(['mackereth' in x.lower() for x in show_authors]):
# Bold my name because it makes the cut to be shown
names = []
for name in show_authors:
if 'mackereth' in name.lower():
name = '\\textbf{Mackereth,~J.~T.}'
else:
name = format_name(name)
names.append(name)
author_tex = '; '.join(names)
if len(show_authors) < len(raw_authors): # use et al.
author_tex = author_tex + "~et al."
else:
# Add "incl. " after et al., because I'm buried in the author list
author_tex = "{0}".format(format_name(show_authors[0]))
author_tex += "~et al.~(incl. \\textbf{JTM})"
return author_tex
def get_papers(author):
papers = list(
ads.SearchQuery(
author=author,
fl=[
"id",
"title",
"author",
"doi",
"year",
"pubdate",
"pub",
"volume",
"page",
"identifier",
"doctype",
"citation_count",
"bibcode",
],
max_pages=100,
))
dicts = []
for paper in papers:
aid = [
":".join(t.split(":")[1:]) for t in paper.identifier
if t.startswith("arXiv:")
]
for t in paper.identifier:
if len(t.split(".")) != 2:
continue
try:
list(map(int, t.split(".")))
except ValueError:
pass
else:
aid.append(t)
try:
page = int(paper.page[0])
except (ValueError, TypeError):
page = None
if paper.page is not None and paper.page[0].startswith("arXiv:"):
aid.append(":".join(paper.page[0].split(":")[1:]))
dicts.append(
dict(
doctype=paper.doctype,
authors=list(map(utf8totex, paper.author)),
year=paper.year,
pubdate=paper.pubdate,
doi=paper.doi[0] if paper.doi is not None else None,
title=utf8totex(paper.title[0]),
pub=paper.pub,
volume=paper.volume,
page=page,
arxiv=aid[0] if len(aid) else None,
citations=(paper.citation_count
if paper.citation_count is not None else 0),
url="https://ui.adsabs.harvard.edu/abs/" + paper.bibcode,
))
return sorted(dicts, key=itemgetter("pubdate"), reverse=True)
def format_repo(repo):
repo = repo["node"]
for k in ["name", "description"]:
repo[k] = utf8totex(repo[k])
txt = "\\item \href{{{repo[url]}}}{{{{\\bf {repo[name]}}}}} --- "
txt += "{repo[stargazers][totalCount]} stars / "
txt += "{repo[forkCount]} forks \\\\\n"
txt += "{repo[description]} "
txt += "\\href{{{repo[homepageUrl]}}}{{[docs]}}"
txt = txt.format(repo=repo)
return txt
def format_title(arg):
"""
Customized!
"""
# Do the conversion
arg = utf8totex(arg)
# Handle subscripts
arg = re.sub("<SUB>(.*?)</SUB>", r"$_\1$", arg)
# Fudge O2 paper
arg = re.sub("O2Buildup", r"O$_2$ Buildup", arg)
# Capitalize!
arg = titlecase(arg, callback=title_callback)
return arg
def get_paper_items(papers):
refereeds = []
proceedings = []
preprints = []
first_authors = []
co_authors = []
#need to do a re-sort by pubdate
dates = []
papers = sorted(papers, key=lambda x: x['pubdate'], reverse=True)
for paper in papers:
authors = parse_authors(paper)
entry = authors
# Skip if the publication is in the skip list:
if any([
re.match(re.compile(pattr), paper['pub'].lower())
for pattr in JOURNAL_SKIP
]):
continue
is_proceedings = False
if paper['doctype'] == 'inproceedings':
is_proceedings = True
if paper["doi"] is not None:
title = "\\doi{{{0}}}{{{1}}}".format(paper["doi"],
utf8totex(paper["title"]))
else:
title = "\\textit{{{0}}}".format(utf8totex(paper["title"]))
entry += ", " + title
if paper['pubdate'] is not None:
entry += ", {0}".format(paper['pubdate'].split('-')[0])
if paper["pub"] not in [None, "ArXiv e-prints",
"arXiv e-prints"]: # HACK
pub = JOURNAL_MAP.get(paper["pub"].strip("0123456789# ").lower(),
None)
if pub is None:
if is_proceedings:
pub = paper['pub']
else:
print("Journal '{0}' not recognized for paper '{1}' - "
" skipping...".format(paper['pub'], paper['title']))
continue
entry += ", " + pub
is_preprint = False
else:
is_preprint = True
if paper["volume"] is not None:
entry += ", {{{0}}}".format(paper["volume"])
if paper["page"] is not None:
entry += ", {0}".format(paper["page"])
if paper["arxiv"] is not None:
entry += " (\\arxiv{{{0}}})".format(paper["arxiv"])
if paper["citations"] > 1:
entry += (
"~~{{\\footnotesize[\\href{{{0}}}{{cited: {1}}}]}}".format(
paper["url"], paper["citations"]))
if is_preprint:
preprints.append(entry)
elif is_proceedings:
proceedings.append(entry)
else:
refereeds.append(entry)
if "mackereth" in paper["authors"][0].lower() and not is_proceedings:
first_authors.append(entry)
if "mackereth" not in paper["authors"][0].lower(
) and not is_proceedings and not is_preprint:
co_authors.append(entry)
# Now go through and add the \item and numbers:
for corpus in [
preprints, proceedings, refereeds, first_authors, co_authors
]:
for i, item in enumerate(corpus):
num = len(corpus) - i
corpus[i] = ("\\item[{\\scriptsize" + str(num) + "}]" + item)
return refereeds, proceedings, preprints, first_authors, co_authors
def get_paper_items(papers):
refereeds = []
preprints = []
for paper in papers:
authors = parse_authors(paper)
entry = authors
# Skip if the publication is in the skip list:
if any([re.match(re.compile(pattr), paper['pub'].lower())
for pattr in JOURNAL_SKIP]):
continue
if paper["doi"] is not None:
title = "\\doi{{{0}}}{{{1}}}".format(paper["doi"],
utf8totex(paper["title"]))
else:
title = "\\textit{{{0}}}".format(utf8totex(paper["title"]))
entry += ", " + title
if paper["pub"] not in [None, "ArXiv e-prints", "arXiv e-prints"]: # HACK
pub = JOURNAL_MAP.get(paper["pub"].strip("0123456789# ").lower(),
None)
if pub is None:
print("Journal '{0}' not recognized for paper '{1}' - "
" skipping...".format(paper['pub'], paper['title']))
continue
entry += ", " + pub
is_preprint = False
else:
is_preprint = True
if paper["volume"] is not None:
entry += ", \\textbf{{{0}}}".format(paper["volume"])
if paper["page"] is not None:
entry += ", {0}".format(paper["page"])
if paper['pubdate'] is not None:
entry += ", {0}".format(paper['pubdate'].split('-')[0])
if paper["arxiv"] is not None:
entry += " (\\arxiv{{{0}}})".format(paper["arxiv"])
if paper["citations"] > 1:
entry += (" [\\href{{{0}}}{{{1} citations}}]"
.format(paper["url"], paper["citations"]))
if is_preprint:
preprints.append(entry)
else:
refereeds.append(entry)
# Now go through and add the \item and numbers:
for corpus in [preprints, refereeds]:
for i, item in enumerate(corpus):
num = len(corpus) - i
corpus[i] = ("\\item[{\\color{deemph}\\scriptsize" +
str(num) + "}]" + item)
return refereeds, preprints