def main(draw_thumb=False, export_csv=False):
django.setup()
logging.info('> Flushing SQL data')
execute_from_command_line(['', 'flush', '--noinput'])
transaction.set_autocommit(False)
database_io.CheckData()
logging.info('> Loading citation data')
database_io.LoadCitationData()
transaction.commit()
logging.info('> Loading KEGG compound names')
cid_replace = database_io.LoadKeggCompoundNames()
transaction.commit()
logging.info('> Loading KEGG compound thermodynamic data')
database_io.LoadFormationEnergies()
database_io.LoadAlbertyEnergies()
transaction.commit()
logging.info('> Loading KEGG reaction data')
database_io.LoadKeggReactions(cid_replace)
transaction.commit()
logging.info('> Loading KEGG enzyme data')
database_io.LoadKeggEnzymes()
transaction.commit()
if draw_thumb:
logging.info('> Drawing thumbnails for all KEGG compounds')
database_io.GenerateCompoundThumbnails()
transaction.commit()
logging.info('> Loading corrections/additions to KEGG')
database_io.LoadAdditionalCompoundData()
transaction.commit()
if export_csv:
logging.info('> Exporting database to JSON and CSV files')
database_io.export_database()
logging.info('> Rebuilding Solr index')
execute_from_command_line(['', 'rebuild_index', '--noinput'])
def load_from_raw_files(draw_thumb, export_csv):
from util import database_io
transaction.set_autocommit(False)
database_io.CheckData()
logging.info('> Loading citation data')
database_io.LoadCitationData()
transaction.commit()
logging.info('> Loading KEGG compound names')
cid_replace = database_io.LoadKeggCompoundNames()
transaction.commit()
logging.info('> Loading KEGG compound thermodynamic data')
database_io.LoadFormationEnergies()
database_io.LoadAlbertyEnergies()
transaction.commit()
logging.info('> Loading KEGG reaction data')
database_io.LoadKeggReactions(cid_replace)
transaction.commit()
logging.info('> Loading KEGG enzyme data')
database_io.LoadKeggEnzymes()
transaction.commit()
if draw_thumb:
logging.info('> Drawing thumbnails for all KEGG compounds')
database_io.GenerateCompoundThumbnails()
transaction.commit()
logging.info('> Loading corrections/additions to KEGG')
database_io.LoadAdditionalCompoundData()
transaction.commit()
if export_csv:
logging.info('> Exporting database to JSON and CSV files')
database_io.export_database()
def main(draw_thumb=False, export_csv=False):
transaction.set_autocommit(False)
db.CheckData()
logging.info('Loading citation data')
db.LoadCitationData()
transaction.commit()
logging.info('Loading KEGG compound names')
cid_replace = db.LoadKeggCompoundNames()
transaction.commit()
logging.info('Loading KEGG compound thermodynamic data')
db.LoadFormationEnergies()
db.LoadAlbertyEnergies()
transaction.commit()
logging.info('Loading KEGG reaction data')
db.LoadKeggReactions(cid_replace)
transaction.commit()
logging.info('Loading KEGG enzyme data')
db.LoadKeggEnzymes()
transaction.commit()
if draw_thumb:
logging.info('Drawing thumbnails for all KEGG compounds')
db.GenerateCompoundThumbnails()
transaction.commit()
logging.info('Loading corrections/additions to KEGG')
db.LoadAdditionalCompoundData()
transaction.commit()
if export_csv:
logging.info('Exporting database to JSON and CSV files')
db.export_database()
def main():
logging.info('Exporting database to JSON and CSV files')
db.export_database()
