def test_cspp_nutnr_uses_ctd_pressure(self): nut_fn = 'nutnr_j_cspp_instrument_recovered.nc' ctd_fn = 'ctdpf_j_cspp_instrument_recovered.nc' nut_ds = xr.open_dataset(os.path.join(DATA_DIR, nut_fn), decode_times=False) ctd_ds = xr.open_dataset(os.path.join(DATA_DIR, ctd_fn), decode_times=False) tr = TimeRange(nut_ds.time.values[0], nut_ds.time.values[-1]) sr = StreamRequest(self.nut_sk2, [], tr, {}, request_id='UNIT') nut_ds = nut_ds[self.base_params + [p.name for p in sr.stream_parameters[self.nut_sk2]]] sr.datasets[self.ctd_sk2] = StreamDataset(self.ctd_sk2, sr.uflags, [self.nut_sk2], sr.request_id) sr.datasets[self.nut_sk2] = StreamDataset(self.nut_sk2, sr.uflags, [self.ctd_sk2], sr.request_id) sr.datasets[self.ctd_sk2]._insert_dataset(ctd_ds) sr.datasets[self.nut_sk2]._insert_dataset(nut_ds) sr.calculate_derived_products() sr.import_extra_externals() sr.rename_parameters() self.assertIn('int_ctd_pressure', sr.datasets[self.nut_sk2].datasets[1]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertIn('int_ctd_pressure', each)
def test_add_externals(self): nutnr_sk = StreamKey('CE04OSPS', 'SF01B', '4A-NUTNRA102', 'streamed', 'nutnr_a_sample') ctdpf_sk = StreamKey('CE04OSPS', 'SF01B', '2A-CTDPFA107', 'streamed', 'ctdpf_sbe43_sample') nutnr_fn = 'nutnr_a_sample.nc' ctdpf_fn = 'ctdpf_sbe43_sample.nc' cals = json.load(open(os.path.join(DATA_DIR, 'cals.json'))) tr = TimeRange(3.65342400e+09, 3.65351040e+09) coefficients = {k: [{'start': tr.start-1, 'stop': tr.stop+1, 'value': cals[k], 'deployment': 1}] for k in cals} sr = StreamRequest(nutnr_sk, [2443], coefficients, tr, {}, request_id='UNIT') nutnr_ds = xr.open_dataset(os.path.join(DATA_DIR, nutnr_fn), decode_times=False) ctdpf_ds = xr.open_dataset(os.path.join(DATA_DIR, ctdpf_fn), decode_times=False) ctdpf_ds = ctdpf_ds[self.base_params + [p.name for p in sr.stream_parameters[ctdpf_sk]]] nutnr_ds = nutnr_ds[self.base_params + [p.name for p in sr.stream_parameters[nutnr_sk]]] sr.datasets[ctdpf_sk] = StreamDataset(ctdpf_sk, sr.coefficients, sr.uflags, [nutnr_sk], sr.request_id) sr.datasets[nutnr_sk] = StreamDataset(nutnr_sk, sr.coefficients, sr.uflags, [ctdpf_sk], sr.request_id) sr.datasets[ctdpf_sk]._insert_dataset(ctdpf_ds) sr.datasets[nutnr_sk]._insert_dataset(nutnr_ds) sr.calculate_derived_products() sr.import_extra_externals() self.assertIn('ctdpf_sbe43_sample-seawater_pressure', sr.datasets[nutnr_sk].datasets[0]) self.assertNotIn('ctdpf_sbe43_sample-seawater_pressure', sr.datasets[ctdpf_sk].datasets[0]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertIn('int_ctd_pressure', each)
def test_add_externals(self): nutnr_sk = StreamKey('CE04OSPS', 'SF01B', '4A-NUTNRA102', 'streamed', 'nutnr_a_sample') ctdpf_sk = StreamKey('CE04OSPS', 'SF01B', '2A-CTDPFA107', 'streamed', 'ctdpf_sbe43_sample') nutnr_fn = 'nutnr_a_sample.nc' ctdpf_fn = 'ctdpf_sbe43_sample.nc' cals = json.load(open(os.path.join(DATA_DIR, 'cals.json'))) tr = TimeRange(3.65342400e+09, 3.65351040e+09) coefficients = { k: [{ 'start': tr.start - 1, 'stop': tr.stop + 1, 'value': cals[k], 'deployment': 1 }] for k in cals } sr = StreamRequest(nutnr_sk, [2443], coefficients, tr, {}, request_id='UNIT') nutnr_ds = xr.open_dataset(os.path.join(DATA_DIR, nutnr_fn), decode_times=False) ctdpf_ds = xr.open_dataset(os.path.join(DATA_DIR, ctdpf_fn), decode_times=False) ctdpf_ds = ctdpf_ds[self.base_params + [p.name for p in sr.stream_parameters[ctdpf_sk]]] nutnr_ds = nutnr_ds[self.base_params + [p.name for p in sr.stream_parameters[nutnr_sk]]] sr.datasets[ctdpf_sk] = StreamDataset(ctdpf_sk, sr.coefficients, sr.uflags, [nutnr_sk], sr.request_id) sr.datasets[nutnr_sk] = StreamDataset(nutnr_sk, sr.coefficients, sr.uflags, [ctdpf_sk], sr.request_id) sr.datasets[ctdpf_sk]._insert_dataset(ctdpf_ds) sr.datasets[nutnr_sk]._insert_dataset(nutnr_ds) sr.calculate_derived_products() sr.import_extra_externals() self.assertIn('ctdpf_sbe43_sample-seawater_pressure', sr.datasets[nutnr_sk].datasets[0]) self.assertNotIn('ctdpf_sbe43_sample-seawater_pressure', sr.datasets[ctdpf_sk].datasets[0]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertIn('int_ctd_pressure', each)
def test_add_externals_glider(self): gps_fn = 'deployment0003_CE05MOAS-GL319-00-ENG000000-recovered_host-glider_gps_position.nc' par_fn = 'deployment0003_CE05MOAS-GL319-01-PARADM000-recovered_host-parad_m_glider_recovered.nc' ctd_fn = 'deployment0003_CE05MOAS-GL319-05-CTDGVM000-recovered_host-ctdgv_m_glider_instrument_recovered.nc' gps_sk = StreamKey('CE05MOAS', 'GL319', '00-ENG000000', 'recovered_host', 'glider_gps_position') par_sk = StreamKey('CE05MOAS', 'GL319', '01-PARADM000', 'recovered_host', 'parad_m_glider_recovered') ctd_sk = StreamKey('CE05MOAS', 'GL319', '05-CTDGVM000', 'recovered_host', 'ctdgv_m_glider_instrument_recovered') # Fetch the source data gps_ds = xr.open_dataset(os.path.join(DATA_DIR, gps_fn), decode_times=False) par_ds = xr.open_dataset(os.path.join(DATA_DIR, par_fn), decode_times=False) ctd_ds = xr.open_dataset(os.path.join(DATA_DIR, ctd_fn), decode_times=False) # Create the stream request tr = TimeRange(par_ds.time.values[0], par_ds.time.values[-1]) sr = StreamRequest(par_sk, [], tr, {}, request_id='UNIT') # Filter the source data to just the data the stream request says we need gps_ds = gps_ds[self.base_params + [p.name for p in sr.stream_parameters[gps_sk]]] par_ds = par_ds[self.base_params + [p.name for p in sr.stream_parameters[par_sk]]] ctd_ds = ctd_ds[self.base_params + [p.name for p in sr.stream_parameters[ctd_sk]]] # Create the StreamDataset objects sr.datasets[gps_sk] = StreamDataset(gps_sk, sr.uflags, [par_sk, ctd_sk], sr.request_id) sr.datasets[par_sk] = StreamDataset(par_sk, sr.uflags, [gps_sk, ctd_sk], sr.request_id) sr.datasets[ctd_sk] = StreamDataset(ctd_sk, sr.uflags, [par_sk, gps_sk], sr.request_id) sr.datasets[gps_sk].events = self.get_events(gps_sk) sr.datasets[par_sk].events = self.get_events(par_sk) sr.datasets[ctd_sk].events = self.get_events(ctd_sk) # Insert the source data sr.datasets[gps_sk]._insert_dataset(gps_ds) sr.datasets[par_sk]._insert_dataset(par_ds) sr.datasets[ctd_sk]._insert_dataset(ctd_ds) sr.calculate_derived_products() sr.import_extra_externals() # Ticket 9328: int_ctd_pressure is now set in stream_request.import_extra_externals() self.assertNotIn('ctdgv_m_glider_instrument_recovered-sci_water_pressure_dbar', sr.datasets[par_sk].datasets[3]) self.assertIn('int_ctd_pressure', sr.datasets[par_sk].datasets[3]) self.assertNotIn('ctdgv_m_glider_instrument_recovered-sci_water_pressure_dbar', sr.datasets[ctd_sk].datasets[3]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertIn('int_ctd_pressure', each) self.assertIn('lat', each) self.assertIn('lon', each)
def test_add_externals_glider(self): gps_fn = 'deployment0003_CE05MOAS-GL319-00-ENG000000-recovered_host-glider_gps_position.nc' par_fn = 'deployment0003_CE05MOAS-GL319-01-PARADM000-recovered_host-parad_m_glider_recovered.nc' ctd_fn = 'deployment0003_CE05MOAS-GL319-05-CTDGVM000-recovered_host-ctdgv_m_glider_instrument_recovered.nc' gps_sk = StreamKey('CE05MOAS', 'GL319', '00-ENG000000', 'recovered_host', 'glider_gps_position') par_sk = StreamKey('CE05MOAS', 'GL319', '01-PARADM000', 'recovered_host', 'parad_m_glider_recovered') ctd_sk = StreamKey('CE05MOAS', 'GL319', '05-CTDGVM000', 'recovered_host', 'ctdgv_m_glider_instrument_recovered') # Fetch the source data gps_ds = xr.open_dataset(os.path.join(DATA_DIR, gps_fn), decode_times=False) par_ds = xr.open_dataset(os.path.join(DATA_DIR, par_fn), decode_times=False) ctd_ds = xr.open_dataset(os.path.join(DATA_DIR, ctd_fn), decode_times=False) # Create the stream request tr = TimeRange(par_ds.time.values[0], par_ds.time.values[-1]) sr = StreamRequest(par_sk, [], tr, {}, request_id='UNIT') # Filter the source data to just the data the stream request says we need gps_ds = gps_ds[self.base_params + [p.name for p in sr.stream_parameters[gps_sk]]] par_ds = par_ds[self.base_params + [p.name for p in sr.stream_parameters[par_sk]]] ctd_ds = ctd_ds[self.base_params + [p.name for p in sr.stream_parameters[ctd_sk]]] # Create the StreamDataset objects sr.datasets[gps_sk] = StreamDataset(gps_sk, sr.uflags, [par_sk, ctd_sk], sr.request_id) sr.datasets[par_sk] = StreamDataset(par_sk, sr.uflags, [gps_sk, ctd_sk], sr.request_id) sr.datasets[ctd_sk] = StreamDataset(ctd_sk, sr.uflags, [par_sk, gps_sk], sr.request_id) sr.datasets[gps_sk].events = self.get_events(gps_sk) sr.datasets[par_sk].events = self.get_events(par_sk) sr.datasets[ctd_sk].events = self.get_events(ctd_sk) # Insert the source data sr.datasets[gps_sk]._insert_dataset(gps_ds) sr.datasets[par_sk]._insert_dataset(par_ds) sr.datasets[ctd_sk]._insert_dataset(ctd_ds) sr.calculate_derived_products() sr.import_extra_externals() self.assertIn('ctdgv_m_glider_instrument_recovered-sci_water_pressure_dbar', sr.datasets[par_sk].datasets[3]) self.assertNotIn('ctdgv_m_glider_instrument_recovered-sci_water_pressure_dbar', sr.datasets[ctd_sk].datasets[3]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertIn('int_ctd_pressure', each) self.assertIn('lat', each) self.assertIn('lon', each)
def test_pressure_depth_renamed(self): dosta_fn = 'dosta_abcdjm_cspp_instrument_recovered.nc' ctd_fn = 'ctdpf_j_cspp_instrument_recovered.nc' dosta_ds = xr.open_dataset(os.path.join(DATA_DIR, dosta_fn), decode_times=False) ctd_ds = xr.open_dataset(os.path.join(DATA_DIR, ctd_fn), decode_times=False) tr = TimeRange(dosta_ds.time.values[0], dosta_ds.time.values[-1]) sr = StreamRequest(self.dosta_sk, [], tr, {}, request_id='UNIT') dosta_ds = dosta_ds[ self.base_params + [p.name for p in sr.stream_parameters[self.dosta_sk]]] sr.datasets[self.dosta_sk] = StreamDataset(self.dosta_sk, sr.uflags, [self.ctd_sk2], sr.request_id) sr.datasets[self.ctd_sk2] = StreamDataset(self.ctd_sk2, sr.uflags, [self.dosta_sk], sr.request_id) sr.datasets[self.dosta_sk]._insert_dataset(dosta_ds) sr.datasets[self.ctd_sk2]._insert_dataset(ctd_ds) sr.calculate_derived_products() sr.import_extra_externals() sr.rename_parameters() self.assertNotIn('pressure_depth', sr.datasets[self.dosta_sk].datasets[1]) self.assertIn('pressure', sr.datasets[self.dosta_sk].datasets[1]) data = json.loads(JsonResponse(sr).json()) for each in data: self.assertNotIn('pressure_depth', each) self.assertIn('pressure', each)