Python get_bed_from_glimmer3示例

示例#1

def process_Glimmer3( filename, org_num, refseq ):
    try:
        glimmer3_bed = get_bed_from_glimmer3( filename, refseq )
    except Exception as e:
        print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e
        glimmer3_bed = []
    glimmer3_bed_file = open( os.path.join( os.path.split( filename )[0], "%s.Glimmer3.bed" % refseq ), 'wb+' )
    glimmer3_bed_file.write( '\n'.join( glimmer3_bed ) )
    glimmer3_bed_file.close()

示例#2

文件： harvest_bacteria.py 项目： AAFC-MBB/galaxy-1

def process_Glimmer3( filename, org_num, refseq ):
    try:
        glimmer3_bed = get_bed_from_glimmer3( filename, refseq )
    except Exception as e:
        print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e
        glimmer3_bed = []
    glimmer3_bed_file = open( os.path.join( os.path.split( filename )[0], "%s.Glimmer3.bed" % refseq ), 'wb+' )
    glimmer3_bed_file.write( '\n'.join( glimmer3_bed ) )
    glimmer3_bed_file.close()

示例#3

文件： harvest_bacteria.py 项目： kidaak/galaxy

def process_Glimmer3( filename, org_num, refseq ):
    try:
        glimmer3_bed = get_bed_from_glimmer3( filename, refseq )
    except Exception, e:
        print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e
        glimmer3_bed = []

示例#4

def process_Glimmer3(filename, org_num, refseq):
    try:
        glimmer3_bed = get_bed_from_glimmer3(filename, refseq)
    except Exception, e:
        print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e
        glimmer3_bed = []