def process_Glimmer3( filename, org_num, refseq ): try: glimmer3_bed = get_bed_from_glimmer3( filename, refseq ) except Exception as e: print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e glimmer3_bed = [] glimmer3_bed_file = open( os.path.join( os.path.split( filename )[0], "%s.Glimmer3.bed" % refseq ), 'wb+' ) glimmer3_bed_file.write( '\n'.join( glimmer3_bed ) ) glimmer3_bed_file.close()
def process_Glimmer3( filename, org_num, refseq ): try: glimmer3_bed = get_bed_from_glimmer3( filename, refseq ) except Exception, e: print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e glimmer3_bed = []
def process_Glimmer3(filename, org_num, refseq): try: glimmer3_bed = get_bed_from_glimmer3(filename, refseq) except Exception, e: print "Converting Glimmer3 to bed FAILED! For chrom:", refseq, "file:", filename, e glimmer3_bed = []