def getIndigoExceptionText(e):
if isJython():
return e.message
elif isIronPython():
return e.Message.replace("\\'", "'")
else:
value = str(e)
if value[0] == '\'' and value[-1] == '\'':
value = value[1:-1]
if value[0] == '"' and value[-1] == '"':
value = value[1:-1]
return value.replace("\\'", "'")
def open_file_utf8(filename):
import codecs
if isJython():
return open(filename, 'wt')
elif isIronPython():
# TODO: FIXME (maybe on C# site?)
return codecs.open(filename, 'wb', encoding='utf-8') # FAILED: wrong symbols
# return open(filename, 'wt') # ERROR: UnicodeEncodeError: 'ascii' codec can't encode character '\uFFFD' in position 814: ordinal not in range(128)
# return open(filename, 'wb') # ERROR: UnicodeEncodeError: 'ascii' codec can't encode character '\uFFFD' in position 724: ordinal not in range(128)
# return codecs.open(filename, 'wb') # # ERROR: UnicodeEncodeError: 'ascii' codec can't encode character '\uFFFD' in position 724: ordinal not in range(128)
else:
if sys.version_info.major < 3:
return open(filename, 'wt')
else:
return codecs.open(filename, 'wb', encoding='utf-8')
def __init__(self, path=None):
Indigo.__init__(self, path)
if isJython() or isIronPython():
IndigoObject = IndigoObjectCoverageWrapper
# TODO: Change standard IndigoObject to IndigoObjectCoverageWrapper
else:
self.IndigoObject = IndigoObjectCoverageWrapper
self._indigoObjectCoverageDict = dict()
self._indigoObjectCoverageByTypeDict = dict()
m = self.createMolecule()
for item in getmembers(m):
if type(item[1]) in (BuiltinFunctionType, BuiltinMethodType,
MethodType,
FunctionType) and not item[0].startswith('_'):
self._indigoObjectCoverageDict[item[0]] = 0
self._indigoCoverageDict = dict()
for item in getmembers(self):
if type(item[1]) in (BuiltinFunctionType, BuiltinMethodType,
MethodType,
FunctionType) and not item[0].startswith('_'):
self._indigoCoverageDict[item[0]] = 0
if 'INDIGO_COVERAGE' in os.environ:
from indigo_coverage import IndigoCoverageWrapper as Indigo, IndigoObjectCoverageWrapper as IndigoObject, IndigoException, IndigoRenderer, IndigoInchi
Indigo.IndigoObject = IndigoObject
else:
cur_path = os.path.abspath(os.path.dirname(__file__))
distPaths = [
os.path.normpath(os.path.join(cur_path, '../../../../dist')),
]
success = False
indigo_root = os.path.dirname(
os.path.dirname(
os.path.dirname(
os.path.dirname(os.path.dirname(os.path.abspath(__file__))))))
if isIronPython():
if not 'INDIGO_PATH' in os.environ:
import clr
target_framework = 'netstandard2.0'
dll_full_path = os.path.normpath(
os.path.abspath(
os.path.join(
indigo_root,
"api/dotnet/bin/Release/{}/Indigo.Net.dll".format(
target_framework))))
if not os.path.exists(dll_full_path):
for distPath in distPaths:
if not dir_exists(distPath):
continue
dll_full_path_base = None
for item in os.listdir(distPath):