def __init__(self, args, cfg, main_process):
self.args = args
self.cfg = cfg
self.start_epoch = 0
self.best_score = -1e16
self.checkpoint = Checkpoint(args.snapshot_dir, max_n=3)
self.main_process = main_process
self.writer = None
self.writer_target = None
if main_process:
logdir = os.path.join(args.logdir, 'train')
self.writer = SummaryWriter(logdir)
self.writer_target = SummaryWriter(
os.path.join(args.logdir, 'train_target'))
def __init__(self, args, quiet=False):
self.args = args
self.quiet = quiet
# config
# Reading the config
if type(args.cfg_file) is str \
and os.path.isfile(args.cfg_file):
cfg_from_file(args.cfg_file)
if args.set_cfgs is not None:
cfg_from_list(args.set_cfgs)
self.start_epoch = 0
self.best_score = -1e16
self.checkpoint = Checkpoint(args.snapshot_dir, max_n = 5)
if not quiet:
#self.model_id = "%s" % args.run
logdir = os.path.join(args.logdir, 'train')
logdir_val = os.path.join(args.logdir, 'val')
self.writer = SummaryWriter(logdir)
self.writer_val = SummaryWriter(logdir_val)
# loading the model
args = get_arguments(sys.argv[1:])
# reading the config
cfg_from_file(args.cfg_file)
if args.set_cfgs is not None:
cfg_from_list(args.set_cfgs)
# initialising the dirs
check_dir(args.mask_output_dir, "vis")
check_dir(args.mask_output_dir, "crf")
# Loading the model
model = get_model(cfg.NET, num_classes=cfg.TEST.NUM_CLASSES)
checkpoint = Checkpoint(args.snapshot_dir, max_n=5)
checkpoint.add_model('enc', model)
checkpoint.load(args.resume)
for p in model.parameters():
p.requires_grad = False
# setting the evaluation mode
model.eval()
assert hasattr(model, 'normalize')
transform = tf.Compose([np.asarray, model.normalize])
WriterClass, DatasetClass = get_inference_io(cfg.TEST.METHOD)
dataset = DatasetClass(args.infer_list, cfg.TEST, transform=transform)
class BaseTrainer(object):
def __del__(self):
# commented out, because hangs on exit
# (presumably some bug with threading in TensorboardX)
"""
if not self.quiet:
self.writer.close()
self.writer_val.close()
"""
pass
def __init__(self, args, quiet=False):
self.args = args
self.quiet = quiet
# config
# Reading the config
if type(args.cfg_file) is str \
and os.path.isfile(args.cfg_file):
cfg_from_file(args.cfg_file)
if args.set_cfgs is not None:
cfg_from_list(args.set_cfgs)
self.start_epoch = 0
self.best_score = -1e16
self.checkpoint = Checkpoint(args.snapshot_dir, max_n = 5)
if not quiet:
#self.model_id = "%s" % args.run
logdir = os.path.join(args.logdir, 'train')
logdir_val = os.path.join(args.logdir, 'val')
self.writer = SummaryWriter(logdir)
self.writer_val = SummaryWriter(logdir_val)
def _define_checkpoint(self, name, model, optim):
self.checkpoint.add_model(name, model, optim)
def _load_checkpoint(self, suffix):
if self.checkpoint.load(suffix):
# loading the epoch and the best score
tmpl = re.compile("^e(\d+)Xs([\.\d+\-]+)$")
match = tmpl.match(suffix)
if not match:
print("Warning: epoch and score could not be recovered")
return
else:
epoch, score = match.groups()
self.start_epoch = int(epoch) + 1
self.best_score = float(score)
def checkpoint_epoch(self, score, epoch):
if score > self.best_score:
self.best_score = score
print(">>> Saving checkpoint with score {:3.2e}, epoch {}".format(score, epoch))
suffix = "e{:03d}Xs{:4.3f}".format(epoch, score)
self.checkpoint.checkpoint(suffix)
return True
def checkpoint_best(self, score, epoch):
if score > self.best_score:
print(">>> Saving checkpoint with score {:3.2e}, epoch {}".format(score, epoch))
self.best_score= score
suffix = "e{:03d}Xs{:4.3f}".format(epoch, score)
self.checkpoint.checkpoint(suffix)
return True
return False
@staticmethod
def get_optim(params, cfg):
if not hasattr(torch.optim, cfg.OPT):
print("Optimiser {} not supported".format(cfg.OPT))
raise NotImplementedError
optim = getattr(torch.optim, cfg.OPT)
if cfg.OPT == 'Adam':
upd = torch.optim.Adam(params, lr=cfg.LR, \
betas=(cfg.BETA1, 0.999), \
weight_decay=cfg.WEIGHT_DECAY)
elif cfg.OPT == 'SGD':
print("Using SGD >>> learning rate = {:4.3e}, momentum = {:4.3e}, weight decay = {:4.3e}".format(cfg.LR, cfg.MOMENTUM, cfg.WEIGHT_DECAY))
upd = torch.optim.SGD(params, lr=cfg.LR, \
momentum=cfg.MOMENTUM, \
weight_decay=cfg.WEIGHT_DECAY)
else:
upd = optim(params, lr=cfg.LR)
upd.zero_grad()
return upd
@staticmethod
def set_lr(optim, lr):
for param_group in optim.param_groups:
param_group['lr'] = lr
def write_image(self, images, epoch):
for i, group in enumerate(images):
for j, image in enumerate(group):
self.writer.add_image("{}/{}".format(i, j), image, epoch)
def _visualise_grid(self, x_all, labels, t, ious=None, tag="visualisation", scores=None, save_image=False, epoch=0, index=0, info=None):
# adding the labels to images
bs, ch, h, w = x_all.size()
x_all_new = torch.zeros(bs, ch, h + 85, w)
_, y_labels_idx = torch.max(labels, -1)
classNamesOffset = len(self.classNames) - labels.size(1) - 1
classNames = self.classNames[classNamesOffset:-1]
for b in range(bs):
label_idx = labels[b]
predict_idx = torch.argmax(scores[b]).item()
label_names = [name for i,name in enumerate(classNames) if label_idx[i].item()]
predict = classNames[predict_idx]
# label_name = + + '\n'
row2 = ["Ground truth: " + ", ".join(label_names), "Predict: " + predict, "", ""]
for i in range(len(classNames)):
row2.append("{} mask".format(classNames[i]))
row3 = ["Input image", "Raw output", "PAMR", "Pseudo gt"]
for i in range(len(classNames)):
row3.append("score: {:.2f}".format(scores[b][i]))
row_template = "{:<22}" * (4+len(classNames))
label_name = info[b][:200] + '\n' + info[b][200:] + '\n' + row_template.format(*row2) + '\n' + row_template.format(*row3)
ndarr = x_all[b].mul(255).clamp(0, 255).byte().permute(1, 2, 0).cpu().numpy()
arr = np.zeros((85, w, ch), dtype=ndarr.dtype)
ndarr = np.concatenate((arr, ndarr), 0)
im = Image.fromarray(ndarr)
draw = ImageDraw.Draw(im)
font = ImageFont.truetype("fonts/UbuntuMono-R.ttf", 20)
draw.text((5, 1), label_name, (255,255,255), font=font)
if save_image:
path = "./logs/images/{}/{}/{}/{}".format(self.args.run, epoch, label_names[0], predict)
if not os.path.exists(path):
os.makedirs(path)
im.save("{}/{:0>4}.{:0>2}.jpg".format(path, index, b))
im_np = np.array(im).astype(np.float)
x_all_new[b] = (torch.from_numpy(im_np)/255.0).permute(2,0,1)
if not save_image:
summary_grid = vutils.make_grid(x_all_new, nrow=1, padding=8, pad_value=0.9)
self.writer.add_image(tag, summary_grid, t)
def _apply_cmap(self, mask_idx, mask_conf):
palette = self.trainloader.dataset.get_palette()
masks = []
col = Colorize()
mask_conf = mask_conf.float() / 255.0
for mask, conf in zip(mask_idx.split(1), mask_conf.split(1)):
m = col(mask).float()
m = m * conf
masks.append(m[None, ...])
return torch.cat(masks, 0)
def _mask_rgb(self, masks, image_norm, alpha=0.3):
# visualising masks
masks_conf, masks_idx = torch.max(masks, 1)
masks_conf = masks_conf - F.relu(masks_conf - 1, 0)
masks_idx_rgb = self._apply_cmap(masks_idx.cpu(), masks_conf.cpu())
return alpha * image_norm + (1 - alpha) * masks_idx_rgb
def _init_norm(self):
self.trainloader.dataset.set_norm(self.enc.normalize)
self.valloader.dataset.set_norm(self.enc.normalize)
self.trainloader_val.dataset.set_norm(self.enc.normalize)
class BaseTrainer(object):
def __init__(self, args, cfg, main_process):
self.args = args
self.cfg = cfg
self.start_epoch = 0
self.best_score = -1e16
self.checkpoint = Checkpoint(args.snapshot_dir, max_n=3)
self.main_process = main_process
self.writer = None
self.writer_target = None
if main_process:
logdir = os.path.join(args.logdir, 'train')
self.writer = SummaryWriter(logdir)
self.writer_target = SummaryWriter(
os.path.join(args.logdir, 'train_target'))
def checkpoint_best(self, score, epoch):
if score > self.best_score:
print(">>> Saving checkpoint with score {:3.2e}, epoch {}".format(
score, epoch))
self.best_score = score
self.checkpoint.checkpoint(score, epoch)
return True
return False
@staticmethod
def get_optim(params, cfg):
if not hasattr(torch.optim, cfg.OPT):
print("Optimiser {} not supported".format(cfg.OPT))
raise NotImplementedError
optim = getattr(torch.optim, cfg.OPT)
if cfg.OPT == 'Adam':
print(
"Using Adam >>> learning rate = {:4.3e}, momentum = {:4.3e}, weight decay = {:4.3e}"
.format(cfg.LR, cfg.MOMENTUM, cfg.WEIGHT_DECAY))
upd = torch.optim.Adam(params, lr=cfg.LR, \
betas=(cfg.BETA1, 0.999), \
weight_decay=cfg.WEIGHT_DECAY)
elif cfg.OPT == 'SGD':
print(
"Using SGD >>> learning rate = {:4.3e}, momentum = {:4.3e}, weight decay = {:4.3e}"
.format(cfg.LR, cfg.MOMENTUM, cfg.WEIGHT_DECAY))
upd = torch.optim.SGD(params, lr=cfg.LR, \
momentum=cfg.MOMENTUM, \
nesterov=cfg.OPT_NESTEROV, \
weight_decay=cfg.WEIGHT_DECAY)
else:
upd = optim(params, lr=cfg.LR)
upd.zero_grad()
return upd
def _visualise(self,
epoch,
image,
masks_gt,
logits,
writer,
tag,
image2=None):
# gathering
def gather_cpu(tensor):
out_list = [tensor.clone() for _ in range(self.world_size)]
dist.all_gather(out_list, tensor)
out_tensor = torch.cat(out_list, 0)
return out_tensor.cpu()
image = gather_cpu(image)
masks_gt = gather_cpu(masks_gt)
for key, val in logits.items():
if not val.is_contiguous():
print("Tensor {} is not contiguous".format(key))
#val = val.contiguous()
else:
logits[key] = gather_cpu(val)
if not image2 is None:
image2 = gather_cpu(image2)
data_palette = self.loader_source.dataset.get_palette()
def downsize(x, mode="bilinear"):
x = x.float()
if x.dim() == 3:
x = x.unsqueeze(1)
if mode == "nearest":
x = F.interpolate(x, self.cfg.TB.IM_SIZE, mode="nearest")
else:
x = F.interpolate(x,
self.cfg.TB.IM_SIZE,
mode=mode,
align_corners=True)
return x.squeeze()
def compute_entpy_rgb(x):
x = -(x * torch.log(1e-8 + x)).sum(1)
x_min = x.min()
x_max = x.max()
x = (x - x_min) / (x_max - x_min)
return self._error_rgb(x)
visuals = []
image_norm = downsize(self.denorm(image.clone())).cpu()
visuals.append(image_norm)
# GT mask
masks_gt_rgb = downsize(self._apply_cmap(masks_gt, data_palette))
masks_gt_rgb = 0.3 * image_norm + 0.7 * masks_gt_rgb
visuals.append(masks_gt_rgb)
if "teacher_labels" in logits:
pseudo_gt = logits["teacher_labels"].cpu()
masks_gt_rgb = downsize(self._apply_cmap(pseudo_gt, data_palette))
masks_gt_rgb = 0.3 * image_norm + 0.7 * masks_gt_rgb
visuals.append(masks_gt_rgb)
# Prediction
masks = downsize(F.softmax(logits["logits_up"], 1)).cpu()
rgb_mask = self._mask_rgb(masks, image_norm, data_palette)
masks_conf, masks_idx = masks.max(1)
rgb_mask = self._apply_cmap(masks_idx, data_palette)
rgb_mask = 0.3 * image_norm + 0.7 * rgb_mask
visuals.append(rgb_mask)
# Confidence
masks_conf_rgb = self._error_rgb(1 - masks_conf,
cmap=cm.get_cmap('inferno'))
masks_conf_rgb = 0.3 * image_norm + 0.7 * masks_conf_rgb
visuals.append(masks_conf_rgb)
if image2 is not None:
image2_norm = downsize(self.denorm(image2.clone())).cpu()
visuals.append(image2_norm)
vis_extra = []
def vlogits_rgb(vlogits, frames_, softmax=True):
if softmax:
vlogits = F.softmax(vlogits, 1)
masks = downsize(vlogits)
masks_conf, masks_idx = masks.max(1)
rgb_mask = self._apply_cmap(masks_idx, data_palette)
rgb_mask = 0.3 * frames_ + 0.7 * rgb_mask
vis_extra.append(rgb_mask)
masks_conf_rgb = self._error_rgb(1 - masks_conf,
cmap=cm.get_cmap('inferno'))
masks_conf_rgb = 0.3 * frames_ + 0.7 * masks_conf_rgb
vis_extra.append(masks_conf_rgb)
if "teacher_init" in logits:
# slow logits
vlogits_rgb(logits["teacher_init"].cpu(), image2_norm)
if "teacher_aligned" in logits:
frames_aligned = downsize(
self.denorm(logits["frames_aligned"].cpu()))
vlogits_rgb(logits["teacher_aligned"].cpu(),
frames_aligned,
softmax=False)
if "teacher_refined" in logits:
logits_ = logits["teacher_refined"].cpu()
vlogits_rgb(logits_.cpu(), image_norm, softmax=False)
if "teacher_conf" in logits:
teach_conf = downsize(logits["teacher_conf"].cpu())
teach_conf_rgb = self._error_rgb((1. - teach_conf),
cmap=cm.get_cmap('inferno'))
teach_conf_rgb = 0.3 * image_norm + 0.7 * teach_conf_rgb
visuals.append(teach_conf_rgb)
visuals += vis_extra
visuals = [x.float() for x in visuals]
visuals = torch.cat(visuals, -1)
if self.main_process:
self._visualise_grid(writer, visuals, epoch, tag)
if "running_conf" in logits:
_, C, _, _ = logits["logits_up"].size()
confs = logits["running_conf"].view(-1, C).mean(0).tolist()
for ii, conf in enumerate(confs):
conf_key = "{:02d}".format(ii)
writer.add_scalar('running_conf/{}'.format(conf_key), conf,
epoch)
def save_fixed_batch(self, key, batch):
if self.fixed_batch is None:
self.fixed_batch = {}
if key in self.fixed_batch:
print("Updating fixed batch: ", key)
self.fixed_batch[key] = {}
batch_items = []
for el in batch:
el = el.clone().cpu() if torch.is_tensor(el) else el
batch_items.append(el)
self.fixed_batch[key] = batch_items
def has_fixed_batch(self, key):
return (not self.fixed_batch is None and \
key in self.fixed_batch)
def _mask_rgb(self, masks, image_norm, palette, alpha=0.3):
# visualising masks
masks_conf, masks_idx = torch.max(masks, 1)
masks_conf = masks_conf - F.relu(masks_conf - 1, 0)
masks_idx_rgb = self._apply_cmap(masks_idx.cpu(),
palette,
mask_conf=masks_conf.cpu())
return alpha * image_norm + (1 - alpha) * masks_idx_rgb
def _apply_cmap(self, mask_idx, palette, mask_conf=None):
# convert mask to RGB
masks_rgb = []
for mask in mask_idx.split(1, 0):
mask = mask.cpu().numpy()[0].astype(np.uint32)
im = Image.fromarray(mask).convert("P")
im.putpalette(palette)
mask_rgb = torch.as_tensor(np.array(im.convert("RGB")))
mask_rgb = mask_rgb.permute(2, 0, 1)
masks_rgb.append(mask_rgb[None, :, :, :])
# cat back
mask_rgb = torch.cat(masks_rgb, 0).float() / 255.0
if not mask_conf is None:
# entropy
mask_entropy = 1 - mask_conf * torch.log(1e-8 + mask_conf) / (
0.5 * math.log(1e-8 + 0.5))
mask_rgb *= mask_entropy[:, None, :, :]
return mask_rgb
def _error_rgb(self, error_mask, cmap=cm.get_cmap('jet')):
error_np = error_mask.cpu().numpy()
# remove alpha channel
error_rgb = cmap(error_np)[:, :, :, :3]
error_rgb = np.transpose(error_rgb, (0, 3, 1, 2))
return torch.from_numpy(error_rgb)
def _visualise_grid(self, writer, x_all, t, tag, ious=None, scores=None):
# adding the labels to images
bs, ch, h, w = x_all.size()
x_all_new = torch.zeros(bs, ch, h, w)
for b in range(bs):
ndarr = x_all[b].mul(255).clamp(0, 255).byte().permute(
1, 2, 0).cpu().numpy()
im = Image.fromarray(ndarr)
im_np = np.array(im).astype(np.float)
x_all_new[b] = (torch.from_numpy(im_np) / 255.0).permute(2, 0, 1)
summary_grid = vutils.make_grid(x_all_new,
nrow=1,
padding=8,
pad_value=0.9)
writer.add_image(tag, summary_grid, t)
def visualise_results(self, epoch, writer, tag, step_func):
# visualising
self.net.eval()
with torch.no_grad():
step_func(epoch, self.fixed_batch[tag], \
train=False, visualise=True, \
writer=writer, tag=tag)