def test_model(model, sess, is_test_mod=False):
batch_generator = generate_batch_data('test' if is_test_mod else 'dev',
model.settings)
all_predict = []
all_ground_truth = []
all_loss = 0
batch_len = 0
for index, batch in enumerate(batch_generator):
feed_dict = model.create_feed_dic(batch, is_training=False)
loss, y_pred = sess.run([model.loss, model.sigmoid_y_pred], feed_dict)
all_predict.extend(get_top_5_id(y_pred, model.settings.batch_size))
all_ground_truth.extend(batch['ground_truth'])
all_loss += loss
batch_len += 1
all_loss = all_loss / batch_len
precision, recall, f1 = evaluate(all_ground_truth, all_predict)
print(
f"\ntest result: precision: {precision} , recall: {recall} , F1: {f1}")
if not is_test_mod:
"""说明是dev,保存模型"""
if f1 > model.max_f1:
model.max_f1 = f1
save_path = model.saver.save(sess, "./checkpoints/{}/{:.3f}_{:.3f}_{:.3f}.ckpt". \
format(model.model_name, precision, recall, f1))
print("find new best model,save to path: ", save_path)
summary = tf.Summary(value=[
tf.Summary.Value(tag="Loss", simple_value=all_loss),
tf.Summary.Value(tag="precision", simple_value=precision),
tf.Summary.Value(tag="recall", simple_value=recall),
tf.Summary.Value(tag="F1", simple_value=f1),
])
global_step = tf.train.global_step(sess, model.global_step)
model.dev_writer.add_summary(summary, global_step=global_step)
def mlp_test():
data = 'data/warfarin_clean.csv'
mlp = MLPBandit(data, 5e-4)
load = loader('data/warfarin_clean.csv', mlp=mlp)
bandit = alg(load, mlp_dim=50)
counts = [0, 0, 0]
cum_regret, avg_regret, avg_accuracy = 0, 0, 0
for i in range(NUM_TRIALS):
reg, avgreg = bandit.evaluate_online()
avg_accuracy += evaluate(bandit.predictions, bandit.data_loader.labels)
cum_regret += reg
avg_regret += avgreg
for pred in bandit.predictions:
counts[int(pred)] += 1
bandit.data_loader.reshuffle()
cum_regret /= NUM_TRIALS
avg_regret /= NUM_TRIALS
avg_accuracy /= NUM_TRIALS
total = sum(counts)
print("Cumulative Regret {}, Average Regret {}".format(
cum_regret, avg_regret))
print("Accuracy: ", avg_accuracy)
print("Average low: {} ({}%)".format(counts[0], 100 * (counts[0] / total)))
print("Average med: {} ({}%)".format(counts[1], 100 * (counts[1] / total)))
print("Average high: {} ({}%)".format(counts[2],
100 * (counts[2] / total)))
def on_epoch_end(self, epoch, logs=None):
""" Run the evaluation callback at the end of a given epoch.
"""
logs = logs or {}
# Run evaluation.
average_precisions, inference_time = evaluate(
self.generator,
self.model,
iou_threshold=self.iou_threshold,
score_threshold=self.score_threshold,
max_detections=self.max_detections,
save_path=self.save_path
)
# Compute per class average precision.
total_instances = []
precisions = []
for label, (average_precision, num_annotations ) in average_precisions.items():
if self.verbose == 1:
print('{:.0f} instances of class'.format(num_annotations),
self.generator.label_to_name(label), 'with average precision: {:.4f}'.format(average_precision))
total_instances.append(num_annotations)
precisions.append(average_precision)
if self.weighted_average:
self.mean_ap = sum([a * b for a, b in zip(total_instances, precisions)]) / sum(total_instances)
else:
self.mean_ap = sum(precisions) / sum(x > 0 for x in total_instances)
if self.tensorboard:
import tensorflow as tf
def on_epoch_end(self, epoch, logs={}):
# run evaluation
average_precisions = evaluate(self.generator,
self.model,
iou_threshold=self.iou_threshold,
score_threshold=self.score_threshold,
max_detections=self.max_detections,
save_path=self.save_path)
self.mean_ap = sum(
average_precisions.values()) / len(average_precisions)
summary = tf.Summary()
if self.verbose == 1:
for label, average_precision in average_precisions.items():
cls = self.generator.label_to_name(label)
print(cls, '{:.4f}'.format(average_precision))
summary = tf.Summary()
summary.value.add(tag=cls, simple_value=average_precision)
self.tensorboard.writer.add_summary(summary, epoch)
print('mAP: {:.4f}'.format(self.mean_ap))
if self.tensorboard is not None and self.tensorboard.writer is not None:
summary_value = summary.value.add()
summary_value.simple_value = self.mean_ap
summary_value.tag = "mAP"
self.tensorboard.writer.add_summary(summary, epoch)
def train_model(model, sess):
model.train_writer.add_graph(sess.graph)
for epoch_index in range(model.settings.max_epoch):
train_fetches = [
model.loss, model.sigmoid_y_pred, model.train_op, model.global_step
]
train_batch_generator = generate_batch_data('train', model.settings)
prog = Progbar(target=model.settings.train_data_size //
model.settings.batch_size)
for index, batch in enumerate(train_batch_generator):
feed_dict = model.create_feed_dic(batch)
loss, y_pred, _, global_step = sess.run(train_fetches, feed_dict)
if global_step % 100 == 0:
precision, recall, f1 = evaluate(
batch['ground_truth'],
get_top_5_id(y_pred, model.settings.batch_size))
prog.update(index + 1, [("Loss", loss),
("precision", precision),
("recall", recall), ("F1", f1)])
summary = tf.Summary(value=[
tf.Summary.Value(tag="Loss", simple_value=loss),
tf.Summary.Value(tag="precision", simple_value=precision),
tf.Summary.Value(tag="recall", simple_value=recall),
tf.Summary.Value(tag="F1", simple_value=f1),
])
model.train_writer.add_summary(summary,
global_step=global_step)
test_model(model, sess)
def evaluate(self):
self.image_list, self.actual_issame = self.get_val_pair(
self.root, self.data_name)
self.feature_extract()
tpr, fpr, accuracy, best_thresholds = evaluate(self.embeddings,
self.actual_issame)
buf = gen_plot(fpr, tpr)
roc_curve = Image.open(buf)
roc_curve_tensor = trans.ToTensor()(roc_curve)
return accuracy.mean(), best_thresholds.mean(), roc_curve_tensor
def evaluate_answer(self, session, data, use_best_span):
# Now we whether finding the best span improves the score
start_indicies, end_indicies = self.predict_for_batch(
session, data, use_best_span)
pred_answer, truth_answer = self.get_sentences_from_indices(
data, start_indicies, end_indicies)
result = evaluate(pred_answer, truth_answer)
f1 = result["f1"]
EM = result["EM"]
return f1, EM
def xxxon_epoch_end(self, epoch, logs=None):
logs = logs or {}
print("==== on_epoch_end {}".format(epoch))
# run evaluation
average_precisions, _ = eval.evaluate(
self.generator,
self.model,
iou_threshold=self.iou_threshold,
score_threshold=self.score_threshold,
max_detections=self.max_detections,
save_path=self.save_path)
# compute per class average precision
total_instances = []
precisions = []
for label, (average_precision,
num_annotations) in average_precisions.items():
if self.verbose == 1:
print(
'{:.0f} instances of class'.format(num_annotations),
self.generator.label_to_name(label),
'with average precision: {:.4f}'.format(average_precision))
total_instances.append(num_annotations)
precisions.append(average_precision)
if self.weighted_average:
self.mean_ap = sum([
a * b for a, b in zip(total_instances, precisions)
]) / sum(total_instances)
else:
self.mean_ap = sum(precisions) / sum(x > 0
for x in total_instances)
if self.tensorboard:
import tensorflow as tf
writer = tf.summary.create_file_writer(self.tensorboard.log_dir)
with writer.as_default():
tf.summary.scalar("mAP", self.mean_ap, step=epoch)
if self.verbose == 1:
for label, (average_precision,
num_annotations) in average_precisions.items():
tf.summary.scalar("AP_" +
self.generator.label_to_name(label),
average_precision,
step=epoch)
writer.flush()
logs['mAP'] = self.mean_ap
if self.verbose == 1:
print('mAP: {:.4f}'.format(self.mean_ap))
def validation(args, model, tokenizer, labels, pad_token_label_id, best_dev, best_test,
global_step, t_total, epoch, tors):
model_type = MODEL_NAMES[tors].lower()
results, _, best_dev, is_updated1 = evaluate(args, model, tokenizer, labels, pad_token_label_id, best_dev, mode="dev", \
logger=logger, prefix='dev [Step {}/{} | Epoch {}/{}]'.format(global_step, t_total, epoch, args.num_train_epochs), verbose=False)
results, _, best_test, is_updated2 = evaluate(args, model, tokenizer, labels, pad_token_label_id, best_test, mode="test", \
logger=logger, prefix='test [Step {}/{} | Epoch {}/{}]'.format(global_step, t_total, epoch, args.num_train_epochs), verbose=False)
# output_dirs = []
if args.local_rank in [-1, 0] and is_updated1:
# updated_self_training_teacher = True
path = os.path.join(args.output_dir+tors, "checkpoint-best-1")
logger.info("Saving model checkpoint to %s", path)
if not os.path.exists(path):
os.makedirs(path)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(path)
tokenizer.save_pretrained(path)
# output_dirs = []
if args.local_rank in [-1, 0] and is_updated2:
# updated_self_training_teacher = True
path = os.path.join(args.output_dir+tors, "checkpoint-best-2")
logger.info("Saving model checkpoint to %s", path)
if not os.path.exists(path):
os.makedirs(path)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(path)
tokenizer.save_pretrained(path)
return best_dev, best_test, is_updated1
def train(self):
console_header = 'Epoch\tTrain_Loss\tTrain_Accuracy\tTest_Accuracy\tEpoch_Runtime\tLearning_Rate'
print_to_console(console_header)
print_to_logfile(self._logfile, console_header, init=True)
for t in range(self._start_epoch, self._epochs):
epoch_start = time.time()
self._scheduler.step(epoch=t)
# reset average meters
self._train_loss.reset()
self._train_accuracy.reset()
self._net.train(True)
self.single_epoch_training(t)
test_accuracy = evaluate(self._test_loader, self._net)
lr = get_lr_from_optimizer(self._optimizer)
if test_accuracy > self._best_accuracy:
self._best_accuracy = test_accuracy
self._best_epoch = t + 1
torch.save(self._net.state_dict(), 'model/step{}_best_epoch.pth'.format(self._step))
# print('*', end='')
epoch_end = time.time()
single_epoch_runtime = epoch_end - epoch_start
# Logging
console_content = '{:05d}\t{:10.4f}\t{:14.4f}\t{:13.4f}\t{:13.2f}\t{:13.1e}'.format(
t + 1, self._train_loss.avg, self._train_accuracy.avg, test_accuracy, single_epoch_runtime, lr)
print_to_console(console_content)
print_to_logfile(self._logfile, console_content, init=False)
# save checkpoint
save_checkpoint({
'epoch': t + 1,
'state_dict': self._net.state_dict(),
'best_epoch': self._best_epoch,
'best_accuracy': self._best_accuracy,
'optimizer': self._optimizer.state_dict(),
'step': self._step,
'scheduler': self._scheduler.state_dict(),
'memory_pool': self.memory_pool,
})
console_content = 'Best at epoch {}, test accuracy is {}'.format(self._best_epoch, self._best_accuracy)
print_to_console(console_content)
# rename log file, stats files and model
os.rename(self._logfile, self._logfile.replace('.txt', '-{}_{}_{}_{:.4f}.txt'.format(
self._config['net'], self._config['batch_size'], self._config['lr'], self._best_accuracy)))
def main(args=None):
# parse arguments
if args is None:
args = sys.argv[1:]
args = parse_args(args)
# make sure keras is the minimum required version
check_keras_version()
# optionally choose specific GPU
if args.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu
keras.backend.tensorflow_backend.set_session(get_session())
# make save path if it doesn't exist
if args.save_path is not None and not os.path.exists(args.save_path):
os.makedirs(args.save_path)
# create the generator
generator = create_generator(args)
# load the model
print('Loading model, this may take a second...')
model = keras.models.load_model(args.model, custom_objects=custom_objects)
# print model summary
print(model.summary())
loss = {'regression': losses.smooth_l1(), 'classification': losses.focal()}
# start evaluation
average_precisions = evaluate(
generator,
model,
# loss,
iou_threshold=args.iou_threshold,
score_threshold=args.score_threshold,
max_detections=args.max_detections,
save_path=args.save_path)
# print evaluation
for label, average_precision in average_precisions.items():
print(generator.label_to_name(label),
'{:.4f}'.format(average_precision))
print('mAP: {:.4f}'.format(
sum(average_precisions.values()) / len(average_precisions)))
def on_epoch_end(self, epoch, logs=None):
logs = logs or {}
# run evaluation
average_precisions = evaluate(
self.generator,
self.model,
iou_threshold=self.iou_threshold,
score_threshold=self.score_threshold,
max_detections=self.max_detections,
visualize=False,
)
# compute per class average precision
total_instances = []
precisions = []
for label, (average_precision,
num_annotations) in average_precisions.items():
if self.verbose == 1:
print(
'{:.0f} instances of class'.format(num_annotations),
self.generator.label_to_name(label),
'with average precision: {:.4f}'.format(average_precision))
total_instances.append(num_annotations)
precisions.append(average_precision)
if self.weighted_average:
self.mean_ap = sum([
a * b for a, b in zip(total_instances, precisions)
]) / sum(total_instances)
else:
self.mean_ap = sum(precisions) / sum(x > 0
for x in total_instances)
if self.tensorboard is not None and self.tensorboard.writer is not None:
import tensorflow as tf
summary = tf.Summary()
summary_value = summary.value.add()
summary_value.simple_value = self.mean_ap
summary_value.tag = "mAP"
self.tensorboard.writer.add_summary(summary, epoch)
logs['mAP'] = self.mean_ap
if self.verbose == 1:
print('mAP: {:.4f}'.format(self.mean_ap))
def run_s1f():
desired_data_features = [
"Age", 'Weight (kg)', 'Height (cm)', "Asian",
"Black or African American", "Unknown or mixed race",
"Amiodarone (Cordarone)", "Enzyme inducer status"
]
data = pd.read_csv('data/warfarin_clean5.csv')
features_of_interest = []
for name in desired_data_features:
for feat in data.columns:
if feat in name:
features_of_interest.append(feat)
print("Using {} features".format(len(features_of_interest)))
print(features_of_interest)
baseline = S1fBaseline(
loader("data/warfarin_clean5.csv", features_of_interest))
cum_regret, avg_regret, avg_accuracy = 0, 0, 0
counts = [0, 0, 0]
for i in range(NUM_TRIALS):
reg, avgreg = baseline.evaluate_online()
avg_accuracy += evaluate(baseline.predictions,
baseline.data_loader.labels)
cum_regret += reg
avg_regret += avgreg
for pred in baseline.predictions:
counts[int(pred)] += 1
baseline.data_loader.reshuffle()
cum_regret /= NUM_TRIALS
avg_regret /= NUM_TRIALS
avg_accuracy /= NUM_TRIALS
total = sum(counts)
print("Results (averaged over {} trials)".format(NUM_TRIALS))
print("Cumulative Regret {}, Average Regret {}".format(
cum_regret, avg_regret))
print("Accuracy: ", avg_accuracy)
print("Average low: {} ({}%)".format(counts[0], 100 * (counts[0] / total)))
print("Average med: {} ({}%)".format(counts[1], 100 * (counts[1] / total)))
print("Average high: {} ({}%)".format(counts[2],
100 * (counts[2] / total)))
def predict(args, tors, labels, pad_token_label_id, best_test):
path = os.path.join(args.output_dir+tors, "checkpoint-best-2")
tokenizer = RobertaTokenizer.from_pretrained(path, do_lower_case=args.do_lower_case)
model = RobertaForTokenClassification_Modified.from_pretrained(path)
model.to(args.device)
# if not best_test:
# result, predictions, _, _ = evaluate(args, model, tokenizer, labels, pad_token_label_id, best=best_test, mode="test")
result, _, best_test, _ = evaluate(args, model, tokenizer, labels, pad_token_label_id, best_test, mode="test", \
logger=logger, verbose=False)
# Save results
output_test_results_file = os.path.join(args.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(result.keys()):
writer.write("{} = {}\n".format(key, str(result[key])))
return best_test
def _main_():
parser = argparse.ArgumentParser(description='evaluate yolov3')
parser.add_argument('--log_dir',
default="logs/",
help='path to log train folder')
parser.add_argument('--annotation_path_val',
default="val.txt",
help=" file annotation data validation yolo format")
parser.add_argument('--model_checkpoint',
default=None,
help=" file checkpoint model")
parser.add_argument('--anchor_path',
default="data_utils/yolo_anchors.txt",
help="file anchor size")
args = parser.parse_args()
log_dir = args.log_dir + "full/"
annotation_path_val = args.annotation_path_val
model_checkpoint = args.model_checkpoint
anchors_path = args.anchor_path
valid_ints, labels = parse_voc_annotation(annotation_path_val, cf.classes)
labels = labels.keys() if len(cf.classes) == 0 else cf.classes
###############################
# Load the model and do evaluation
###############################
model = YOLO(model_path=log_dir + model_checkpoint,
anchors_path=anchors_path)
# compute mAP for all the classes
average_precisions, avg_time = evaluate(model, annotation_path_val)
# print the score
for label, average_precision in average_precisions.items():
print(labels[label] + ': {:.4f}'.format(average_precision))
print('mAP: {:.4f}'.format(
sum(average_precisions.values()) / len(average_precisions)))
print('avg time: {:.4f}'.format(avg_time))
def run_modified_ucb():
data = pd.read_csv('data/warfarin_clean6.csv')
features_of_interest = []
for feat in data.columns:
for name in FEATURES:
if name in feat: features_of_interest.append(feat)
print("Using {} features".format(len(features_of_interest)))
print(features_of_interest)
modified_ucb = SimpleLinearAlg(
loader("data/warfarin_clean6.csv",
features=features_of_interest,
seed=random.randint(1, 100)))
cum_regret, avg_regret, avg_accuracy = 0, 0, 0
counts = [0, 0, 0]
NUM_TRIALS = 1
for i in range(NUM_TRIALS):
reg, avgreg = modified_ucb.evaluate_online()
avg_accuracy += evaluate(modified_ucb.predictions,
modified_ucb.data_loader.labels)
cum_regret += reg
avg_regret += avgreg
for pred in modified_ucb.predictions:
counts[int(pred)] += 1
modified_ucb.data_loader.reshuffle()
cum_regret /= NUM_TRIALS
avg_regret /= NUM_TRIALS
avg_accuracy /= NUM_TRIALS
total = sum(counts)
print("Results (averaged over {} trials)".format(NUM_TRIALS))
print("Cumulative Regret {}, Average Regret {}".format(
cum_regret, avg_regret))
print("Accuracy: ", avg_accuracy)
print("Average low: {} ({}%)".format(counts[0], 100 * (counts[0] / total)))
print("Average med: {} ({}%)".format(counts[1], 100 * (counts[1] / total)))
print("Average high: {} ({}%)".format(counts[2],
100 * (counts[2] / total)))
def main(args=None):
# parse arguments
args = parse_args()
args = load_setting_cfg(args)
# optionally choose specific GPU
if args.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu
set_gpu()
# make save path if it doesn't exist
if args.save_path is not None and not os.path.exists(args.save_path):
os.makedirs(args.save_path)
# create the generator
generator = create_generator(args)
# load the model
print('Loading model, this may take a second...')
model = VGG16FasterRCNN_bbox(num_classes=generator.num_classes())
model.load_weights(filepath=args.weight_path)
# print model summary
print(model.summary())
# start evaluation
print('start evaluate')
average_precisions = evaluate(generator,
model,
iou_threshold=args.iou_threshold,
score_threshold=args.score_threshold,
max_detections=args.max_detections,
save_path=args.save_path)
# print evaluation
for label, average_precision in average_precisions.items():
print(generator.label_to_name(label),
'{:.4f}'.format(average_precision))
print('mAP: {:.4f}'.format(
sum(average_precisions.values()) / len(average_precisions)))
def test(test_loader, model, epoch):
l2_distance = PairwiseDistance(2)
model.eval()
labels, distances = [], []
for batch_idx, (data_a, data_b, label) in enumerate(test_loader):
if use_cuda:
data_a, data_b = data_a.cuda(), data_b.cuda()
data_a, data_b, label = Variable(data_a, volatile=True), Variable(
data_b, volatile=True), Variable(label)
out_a, out_b = model(data_a), model(data_b)
distance = l2_distance.forward(out_a, out_b)
distances.append(distance.data.cpu().numpy())
labels.append(label.data.cpu().numpy())
labels = np.array([sublabel for label in labels for sublabel in label])
distances = np.array([subdist for dist in distances for subdist in dist])
TPR, FPR, accuracy, val, val_std, far = evaluate(distances, labels)
logging('[Test Accuracy]: %f' % np.mean(accuracy))
plot_roc(FPR,
TPR,
figure_name='roc_train_epoch_{}.png'.format(epoch),
savefile='./log')
def evaluate_model(generator=None,
model=None,
nt=0.5,
it=0.25,
st=0.4,
md=500,
save_path=None,
mask=None,
output=[]):
# evaluate the model
average_precisions = evaluate(
generator=generator,
model=model,
nms_thres=
nt, # 0.4 IoU threshold for NMS between detections (candidates)
iou_threshold=
it, # 0.2 [AP_25=0.25, AP_50=0.50, AP_75=0.75, AP=avg(0.50,0.05,0.95)]
score_threshold=st, # 0.45 confidence value
max_detections=
md, # fixed value (max=331 from 'eae-cerebro-0014_t001_10003.jpg')
save_path=
save_path, # '/home/bgregorio/workspace/mynet_keras/out_imgs/test',
mask_base_path=mask # '/home/bgregorio/workspace/data/dataset/all/masks'
)
# print evaluation
for l, (r, p, f1, ap, num_annotations) in average_precisions.items():
dic = {
'nms_threshold': nt,
'iou_threshold': it,
'score_threshold': st,
'max_detections': md,
'label': l,
'recall': r,
'precision': p,
'f1_score': f1,
'average_precision': ap,
'num_annotations': num_annotations
}
output.append(dic)
def on_epoch_end(self, epoch, logs=None):
logs = logs or {}
# Run evaluation.
average_precisions, inference_time = evaluate(
self.generator,
self.predict_model,
iou_threshold=self.iou_threshold,
score_threshold=self.score_threshold,
max_detections=self.max_detections,
save_path=self.save_path)
# Compute per class average precision.
total_instances = []
precisions = []
for label, (average_precision,
num_annotations) in average_precisions.items():
if self.verbose == 1:
print(
'{:.0f} instances of class'.format(num_annotations),
self.generator.label_to_name(label),
'with average precision: {:.4f}'.format(average_precision))
total_instances.append(num_annotations)
precisions.append(average_precision)
if self.weighted_average:
self.mean_ap = sum([
a * b for a, b in zip(total_instances, precisions)
]) / sum(total_instances)
else:
self.mean_ap = sum(precisions) / sum(x > 0
for x in total_instances)
with self.file_writer.as_default():
tf.summary.scalar("mAP", self.mean_ap, step=epoch)
logs['mAP'] = self.mean_ap
if self.verbose == 1:
print('mAP: {:.4f}'.format(self.mean_ap))
def validate(mval_loader, SM, eval_mode, GPU):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter), desc='val-sessions', position=2, ascii=True):
SM.eval()
x, labels, y_mask, num_items, index = val_sessions_iter.next() # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
# Sample data for 'support' and 'query': ex) 15 items = 7 sup, 8 queries...
num_support = num_items[:,0].detach().numpy().flatten() # If num_items was odd number, query has one more item.
num_query = num_items[:,1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
# x: the first 10 items out of 20 are support items left-padded with zeros. The last 10 are queries right-padded.
x = x.permute(0,2,1) # bx70*20
x_feat = torch.zeros(batch_sz, 72, 20)
x_feat[:,:70,:] = x.clone()
x_feat[:, 70,:10] = 1
x_feat[:, 71,:10] = labels[:,:10].clone()
x_feat = Variable(x_feat, requires_grad=False).cuda(GPU)
# y
y = labels.clone()
# y_mask
y_mask_que = y_mask.clone()
y_mask_que[:,:10] = 0
# Forward & update
_, y_hat = SM(x_feat) # y_hat: b*20
# if USE_PRED_LABEL is True:
# # Predict
# li = 70 if USE_SUPLOG is True else 29 # the label's dimension indice
# _x = x[:,:,:11] # bx72*11
# for q in range(11,20):
# y_hat = SM(Variable(_x, requires_grad=False)) # will be bx11 at the first round
# # Append next features
# _x = torch.cat((_x, x[:,:,q].unsqueeze(2)), 2) # now bx72*12
# _x[:,li,q] = torch.sigmoid(y_hat[:,-1])
# y_hat = SM(Variable(_x, requires_grad=False)) # y_hat(final): bx20
# del _x
# else:
# y_hat = SM(x)
# Calcultate BCE loss: 뒤에q만 봄
loss = F.binary_cross_entropy_with_logits(input=y_hat*y_mask_que.cuda(GPU), target=y.cuda(GPU)*y_mask_que.cuda(GPU))
total_vloss += loss.item()
# Decision
y_prob = torch.sigmoid(y_hat*y_mask_que.cuda(GPU)).detach().cpu().numpy() # bx20
y_pred = (y_prob[:,10:]>0.5).astype(np.int) # bx10
y_numpy = labels[:,10:].numpy() # bx10
# Acc
total_vcorrects += np.sum((y_pred==y_numpy)*y_mask_que[:,10:].numpy())
total_vquery += np.sum(num_query)
# Eval, Submission
if eval_mode is not 0:
for b in np.arange(batch_sz):
submit.append(y_pred[b,:num_query[b]].flatten())
gt.append(y_numpy[b,:num_query[b]].flatten())
if (val_session+1)%400 == 0:
sample_sup = labels[0,(10-num_support[0]):10].long().numpy().flatten()
sample_que = y_numpy[0,:num_query[0]].astype(int)
sample_pred = y_pred[0,:num_query[0]]
sample_prob = y_prob[0,10:10+num_query[0]]
tqdm.write("S:" + np.array2string(sample_sup) +'\n'+
"Q:" + np.array2string(sample_que) + '\n' +
"P:" + np.array2string(sample_pred) + '\n' +
"prob:" + np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss:{1:.6f} vacc:{2:.4f}".format(val_session,loss.item(), total_vcorrects/total_vquery))
del loss, y_hat, x # Restore GPU memory
# Avg.Acc
if eval_mode==1:
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss/val_session)
hist_vacc.append(total_vcorrects/total_vquery)
return submit
def zeroshot_train(t_depth,
t_width,
t_wght_path,
s_depth,
s_width,
seed=42,
savedir=None,
dataset='cifar10',
sample_per_class=0):
set_seed(seed)
train_name = '%s_T-%d-%d_S-%d-%d_seed_%d' % (dataset, t_depth, t_width,
s_depth, s_width, seed)
if sample_per_class > 0:
train_name += "-m%d" % sample_per_class
log_filename = train_name + '_training_log.csv'
# save dir
if not savedir:
savedir = 'zeroshot_' + train_name
full_savedir = os.path.join(os.getcwd(), savedir)
mkdir(full_savedir)
log_filepath = os.path.join(full_savedir, log_filename)
logger = CustomizedCSVLogger(log_filepath)
# Teacher
teacher = WideResidualNetwork(t_depth,
t_width,
input_shape=Config.input_dim,
dropout_rate=0.0,
output_activations=True,
has_softmax=False)
teacher.load_weights(t_wght_path)
teacher.trainable = False
# Student
student = WideResidualNetwork(s_depth,
s_width,
input_shape=Config.input_dim,
dropout_rate=0.0,
output_activations=True,
has_softmax=False)
if sample_per_class > 0:
s_decay_steps = Config.n_outer_loop * Config.n_s_in_loop + Config.n_outer_loop
else:
s_decay_steps = Config.n_outer_loop * Config.n_s_in_loop
s_optim = Adam(learning_rate=CosineDecay(Config.student_init_lr,
decay_steps=s_decay_steps))
# ---------------------------------------------------------------------------
# Generator
generator = NavieGenerator(input_dim=Config.z_dim)
g_optim = Adam(learning_rate=CosineDecay(Config.generator_init_lr,
decay_steps=Config.n_outer_loop *
Config.n_g_in_loop))
# ---------------------------------------------------------------------------
# Test data
if dataset == 'cifar10':
(x_train, y_train_lbl), (x_test, y_test) = get_cifar10_data()
elif dataset == 'fashion_mnist':
(x_train, y_train_lbl), (x_test, y_test) = get_fashion_mnist_data()
else:
raise ValueError("Only Cifar-10 and Fashion-MNIST supported !!")
test_data_loader = tf.data.Dataset.from_tensor_slices(
(x_test, y_test)).batch(200)
# ---------------------------------------------------------------------------
# Train data (if using train data)
train_dataflow = None
if sample_per_class > 0:
# sample first
x_train, y_train_lbl = \
balance_sampling(x_train, y_train_lbl, data_per_class=sample_per_class)
datagen = ImageDataGenerator(width_shift_range=4,
height_shift_range=4,
horizontal_flip=True,
vertical_flip=False,
rescale=None,
fill_mode='reflect')
datagen.fit(x_train)
y_train = to_categorical(y_train_lbl)
train_dataflow = datagen.flow(x_train,
y_train,
batch_size=Config.batch_size,
shuffle=True)
# Generator loss metrics
g_loss_met = tf.keras.metrics.Mean()
# Student loss metrics
s_loss_met = tf.keras.metrics.Mean()
#
n_cls_t_pred_metric = tf.keras.metrics.Mean()
n_cls_s_pred_metric = tf.keras.metrics.Mean()
max_g_grad_norm_metric = tf.keras.metrics.Mean()
max_s_grad_norm_metric = tf.keras.metrics.Mean()
test_data_loader = tf.data.Dataset.from_tensor_slices(
(x_test, y_test)).batch(200)
teacher.trainable = False
# checkpoint
chkpt_dict = {
'teacher': teacher,
'student': student,
'generator': generator,
's_optim': s_optim,
'g_optim': g_optim,
}
# Saving checkpoint
ckpt = tf.train.Checkpoint(**chkpt_dict)
ckpt_manager = tf.train.CheckpointManager(ckpt,
os.path.join(savedir, 'chpt'),
max_to_keep=2)
# ==========================================================================
# if a checkpoint exists, restore the latest checkpoint.
start_iter = 0
if ckpt_manager.latest_checkpoint:
ckpt.restore(ckpt_manager.latest_checkpoint)
print('Latest checkpoint restored!!')
with open(os.path.join(savedir, 'chpt', 'iteration'), 'r') as f:
start_iter = int(f.read())
logger = CustomizedCSVLogger(log_filepath, append=True)
for iter_ in range(start_iter, Config.n_outer_loop):
iter_stime = time.time()
max_s_grad_norm = 0
max_g_grad_norm = 0
# sample from latern space to have an image
z_val = tf.random.normal([Config.batch_size, Config.z_dim])
# Generator training
loss = 0
for ng in range(Config.n_g_in_loop):
loss, g_grad_norm = train_gen(generator, g_optim, z_val, teacher,
student)
max_g_grad_norm = max(max_g_grad_norm, g_grad_norm.numpy())
g_loss_met(loss)
# ==========================================================================
# Student training
loss = 0
pseudo_imgs, t_logits, t_acts = prepare_train_student(
generator, z_val, teacher)
for ns in range(Config.n_s_in_loop):
# pseudo_imgs, t_logits, t_acts = prepare_train_student(generator, z_val, teacher)
loss, s_grad_norm, s_logits = train_student(
pseudo_imgs, s_optim, t_logits, t_acts, student)
max_s_grad_norm = max(max_s_grad_norm, s_grad_norm.numpy())
n_cls_t_pred = len(np.unique(np.argmax(t_logits, axis=-1)))
n_cls_s_pred = len(np.unique(np.argmax(s_logits, axis=-1)))
# logging
s_loss_met(loss)
n_cls_t_pred_metric(n_cls_t_pred)
n_cls_s_pred_metric(n_cls_s_pred)
# ==========================================================================
# train if provided n samples
if train_dataflow:
x_batch_train, y_batch_train = next(train_dataflow)
t_logits, t_acts = forward(teacher, x_batch_train, training=False)
loss = train_student_with_labels(student, s_optim, x_batch_train,
t_logits, t_acts, y_batch_train)
# ==========================================================================
# --------------------------------------------------------------------
iter_etime = time.time()
max_g_grad_norm_metric(max_g_grad_norm)
max_s_grad_norm_metric(max_s_grad_norm)
# --------------------------------------------------------------------
is_last_epoch = (iter_ == Config.n_outer_loop - 1)
if iter_ != 0 and (iter_ % Config.print_freq == 0 or is_last_epoch):
n_cls_t_pred_avg = n_cls_t_pred_metric.result().numpy()
n_cls_s_pred_avg = n_cls_s_pred_metric.result().numpy()
time_per_epoch = iter_etime - iter_stime
s_loss = s_loss_met.result().numpy()
g_loss = g_loss_met.result().numpy()
max_g_grad_norm_avg = max_g_grad_norm_metric.result().numpy()
max_s_grad_norm_avg = max_s_grad_norm_metric.result().numpy()
# build ordered dict
row_dict = OrderedDict()
row_dict['time_per_epoch'] = time_per_epoch
row_dict['epoch'] = iter_
row_dict['generator_loss'] = g_loss
row_dict['student_kd_loss'] = s_loss
row_dict['n_cls_t_pred_avg'] = n_cls_t_pred_avg
row_dict['n_cls_s_pred_avg'] = n_cls_s_pred_avg
row_dict['max_g_grad_norm_avg'] = max_g_grad_norm_avg
row_dict['max_s_grad_norm_avg'] = max_s_grad_norm_avg
if sample_per_class > 0:
s_optim_iter = iter_ * (Config.n_s_in_loop + 1)
else:
s_optim_iter = iter_ * Config.n_s_in_loop
row_dict['s_optim_lr'] = s_optim.learning_rate(
s_optim_iter).numpy()
row_dict['g_optim_lr'] = g_optim.learning_rate(iter_).numpy()
pprint.pprint(row_dict)
# ======================================================================
if iter_ != 0 and (iter_ % Config.log_freq == 0 or is_last_epoch):
# calculate acc
test_accuracy = evaluate(test_data_loader, student).numpy()
row_dict['test_acc'] = test_accuracy
logger.log_with_order(row_dict)
print('Test Accuracy: ', test_accuracy)
# for check poing
ckpt_save_path = ckpt_manager.save()
print('Saving checkpoint for epoch {} at {}'.format(
iter_ + 1, ckpt_save_path))
with open(os.path.join(savedir, 'chpt', 'iteration'), 'w') as f:
f.write(str(iter_ + 1))
s_loss_met.reset_states()
g_loss_met.reset_states()
max_g_grad_norm_metric.reset_states()
max_s_grad_norm_metric.reset_states()
if iter_ != 0 and (iter_ % 5000 == 0 or is_last_epoch):
generator.save_weights(
join(full_savedir, "generator_i{}.h5".format(iter_)))
student.save_weights(
join(full_savedir, "student_i{}.h5".format(iter_)))
def validate(mval_loader, SM, eval_mode, GPU):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vloss_qlog = 0
total_vloss_skip = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter), desc='val-sessions', position=2, ascii=True):
SM.eval()
x, labels, y_mask, num_items, index = val_sessions_iter.next() # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
# Sample data for 'support' and 'query': ex) 15 items = 7 sup, 8 queries...
num_support = num_items[:,0].detach().numpy().flatten() # If num_items was odd number, query has one more item.
num_query = num_items[:,1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
# x: bx70*20
x = x.permute(0,2,1)
# Prepare ground truth log and label, y
y_qlog = x[:,:41,:].clone() # bx41*20
y_skip = labels.clone() #bx20
y_mask_qlog = y_mask.unsqueeze(1).repeat(1,41,1) #bx41*20
y_mask_skip = y_mask #bx20
# log shift: bx41*20
log_shift = torch.zeros(batch_sz,41,20)
log_shift[:,:,1:] = x[:,:41,:-1]
log_shift[:,:,11:] = 0 # DELETE LOG QUE
# labels_shift: bx1*20(model can only observe past labels)
labels_shift = torch.zeros(batch_sz,1,20)
labels_shift[:,0,1:] = labels[:,:-1].float()
labels_shift[:,0,11:] = 0 #!!! NOLABEL for previous QUERY
# support/query state labels: bx1*20
sq_state = torch.zeros(batch_sz,1,20)
sq_state[:,0,:11] = 1
# Pack x: bx72*20 (or bx32*20 if not using sup_logs)
x = torch.cat((log_shift, x[:,41:,:], labels_shift, sq_state), 1).cuda(GPU) # x: bx72*20
if USE_PRED_LABEL is True:
# Predict
li = 70 # the label's dimension indice
_x = x[:,:,:11].clone() # bx72*11
for q in range(11,20):
y_hat_qlog, y_hat_skip = SM(Variable(_x, requires_grad=False)) # will be bx11 at the first round
# Append next features
_x = torch.cat((_x, x[:,:,q].unsqueeze(2)), 2) # now bx72*12
_x[:,li,q] = torch.sigmoid(y_hat_skip[:,-1]) # replace with predicted label
_x[:,:41,q] = torch.sigmoid(y_hat_qlog[:,-1])
y_hat_qlog, y_hat_skip = SM(Variable(_x, requires_grad=False)) # y_hat(final): bx20
del _x
else:
y_hat_qlog, y_hat_skip = SM(x) # y_hat_qlog: bx41*20, y_hat_skip: b*20
# Calcultate BCE loss
loss_qlog = F.binary_cross_entropy_with_logits(input=y_hat_qlog.cuda(GPU)*y_mask_qlog.cuda(GPU),
target=y_qlog.cuda(GPU)*y_mask_qlog.cuda(GPU))
loss_skip = F.binary_cross_entropy_with_logits(input=y_hat_skip.cuda(GPU)*y_mask_skip.cuda(GPU),
target=y_skip.cuda(GPU)*y_mask_skip.cuda(GPU))
loss = loss_qlog + loss_skip
total_vloss_qlog += loss_qlog.item()
total_vloss_skip += loss_skip.item()
total_vloss += loss.item()
# Decision
y_prob = torch.sigmoid(y_hat_skip.detach()*y_mask_skip.cuda(GPU)).cpu().numpy() # bx20
y_pred = (y_prob[:,10:]>=0.5).astype(np.int) # bx10
y_numpy = y_skip[:,10:].numpy() # bx10
# Acc
total_vcorrects += np.sum((y_pred==y_numpy)*y_mask_skip[:,10:].numpy())
total_vquery += np.sum(num_query)
# Restore GPU memory
del loss, loss_qlog, loss_skip, y_hat_qlog, y_hat_skip
# Eval, Submission
if eval_mode is not 0:
for b in np.arange(batch_sz):
submit.append(y_pred[b,:num_query[b]].flatten())
gt.append(y_numpy[b,:num_query[b]].flatten())
if (val_session+1)%400 == 0:
sample_sup = labels[0,(10-num_support[0]):10].long().numpy().flatten()
sample_que = y_numpy[0,:num_query[0]].astype(int)
sample_pred = y_pred[0,:num_query[0]]
sample_prob = y_prob[0,10:10+num_query[0]]
tqdm.write("S:" + np.array2string(sample_sup) +'\n'+
"Q:" + np.array2string(sample_que) + '\n' +
"P:" + np.array2string(sample_pred) + '\n' +
"prob:" + np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss(qlog|skip):{1:.6f}({2:.6f}|{3:.6f}) vacc:{4:.4f}".format(val_session,
total_vloss/total_vquery, total_vloss_qlog/total_vquery,
total_vloss_skip/total_vquery, total_vcorrects/total_vquery))
# Avg.Acc (skip labels only, log-generation acc is not implemented yet!)
if eval_mode==1:
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss/total_vquery)
hist_vloss_qlog.append(total_vloss_qlog/total_vquery)
hist_vloss_skip.append(total_vloss_skip/total_vquery)
hist_vacc.append(total_vcorrects/total_vquery)
return submit
def test(model,
queryloader,
galleryloader,
use_gpu,
ranks=[1, 5, 10, 20],
return_distmat=False):
batch_time = AverageMeter()
model.eval()
with torch.no_grad():
qf, q_pids, q_camids = [], [], []
for batch_idx, (imgs, pids, camids, _) in enumerate(queryloader):
if use_gpu:
imgs = imgs.cuda()
end = time.time()
features = model(imgs)
batch_time.update(time.time() - end)
features = features.data.cpu()
qf.append(features)
q_pids.extend(pids)
q_camids.extend(camids)
qf = torch.cat(qf, 0)
q_pids = np.asarray(q_pids)
q_camids = np.asarray(q_camids)
print('Extracted features for query set, obtained {}-by-{} matrix'.
format(qf.size(0), qf.size(1)))
gf, g_pids, g_camids = [], [], []
for batch_idx, (imgs, pids, camids, _) in enumerate(galleryloader):
if use_gpu:
imgs = imgs.cuda()
end = time.time()
features = model(imgs)
batch_time.update(time.time() - end)
features = features.data.cpu()
gf.append(features)
g_pids.extend(pids)
g_camids.extend(camids)
gf = torch.cat(gf, 0)
g_pids = np.asarray(g_pids)
g_camids = np.asarray(g_camids)
print('Extracted features for gallery set, obtained {}-by-{} matrix'.
format(gf.size(0), gf.size(1)))
print('=> BatchTime(s)/BatchSize(img): {:.3f}/{}'.format(
batch_time.avg, args.test_batch_size))
m, n = qf.size(0), gf.size(0)
distmat = torch.pow(qf, 2).sum(dim=1, keepdim=True).expand(m, n) + \
torch.pow(gf, 2).sum(dim=1, keepdim=True).expand(n, m).t()
distmat.addmm_(1, -2, qf, gf.t())
distmat = distmat.numpy()
print('Computing CMC and mAP')
cmc, mAP = evaluate(distmat, q_pids, g_pids, q_camids, g_camids)
print('Results ----------')
print('mAP: {:.1%}'.format(mAP))
print('CMC curve')
for r in ranks:
print('Rank-{:<3}: {:.1%}'.format(r, cmc[r - 1]))
print('------------------')
if return_distmat:
return distmat
return cmc[0]
def validate(mval_loader, SM, eval_mode):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter),
desc='val-sessions',
position=2,
ascii=True):
SM.eval()
x, labels, y_mask, num_items, index = val_sessions_iter.next(
) # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
# Sample data for 'support' and 'query': ex) 15 items = 7 sup, 8 queries...
num_support = num_items[:, 0].detach().numpy().flatten(
) # If num_items was odd number, query has one more item.
num_query = num_items[:, 1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
x[:, 10:, :41] = 0 # DELETE METALOG QUE
if USE_SUPLOG is False:
x = x[:, :, 41:] # bx20*70(29)
labels_shift = torch.zeros(batch_sz, 20, 1)
labels_shift[:, 1:, 0] = labels[:, :-1].float()
labels_shift[:, 11:, 0] = 0 # REMOVE QUERY LABELS!
sq_state = torch.zeros(batch_sz, 20, 1)
sq_state[:, :11, 0] = 1
# x: bx72(31)*20
x = torch.cat((x, labels_shift, sq_state), dim=2).permute(0, 2,
1).cuda(GPU)
if USE_PRED_LABEL is True:
# Predict
li = 70 if USE_SUPLOG is True else 29 # the label's dimension indice
_x = x[:, :, :11] # bx72*11
for q in range(11, 20):
y_hat = SM(Variable(
_x,
requires_grad=False)) # will be bx11 at the first round
# Append next features
_x = torch.cat((_x, x[:, :, q].unsqueeze(2)), 2) # now bx72*12
_x[:, li, q] = torch.sigmoid(y_hat[:, -1])
y_hat = SM(Variable(_x, requires_grad=False)) # y_hat(final): bx20
del _x
else:
y_hat = SM(x)
# Calcultate BCE loss
loss = F.binary_cross_entropy_with_logits(
input=y_hat * y_mask.cuda(GPU),
target=labels.cuda(GPU) * y_mask.cuda(GPU))
total_vloss += loss.item()
# Decision
y_prob = torch.sigmoid(y_hat *
y_mask.cuda(GPU)).detach().cpu().numpy() # bx20
y_pred = (y_prob[:, 10:] >= 0.5).astype(np.int) # bx10
y_numpy = labels[:, 10:].numpy() # bx10
# Acc
y_query_mask = y_mask[:, 10:].numpy()
total_vcorrects += np.sum((y_pred == y_numpy) * y_query_mask)
total_vquery += np.sum(num_query)
# Eval, Submission
if eval_mode is not 0:
for b in np.arange(batch_sz):
submit.append(y_pred[b, :num_query[b]].flatten())
gt.append(y_numpy[b, :num_query[b]].flatten())
if (val_session + 1) % 400 == 0:
sample_sup = labels[0, :num_support[0]].long().numpy().flatten()
sample_que = y_numpy[0, :num_query[0]].astype(int)
sample_pred = y_pred[0, :num_query[0]]
sample_prob = y_prob[0, 10:10 + num_query[0]]
tqdm.write("S:" + np.array2string(sample_sup) + '\n' + "Q:" +
np.array2string(sample_que) + '\n' + "P:" +
np.array2string(sample_pred) + '\n' + "prob:" +
np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss:{1:.6f} vacc:{2:.4f}".format(
val_session, loss.item(), total_vcorrects / total_vquery))
del loss, y_hat, x # Restore GPU memory
# Avg.Acc
if eval_mode == 1:
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss / val_session)
hist_vacc.append(total_vcorrects / total_vquery)
return submit
def validate(mval_loader, FeatEnc, RN, eval_mode):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter),
desc='val-sessions',
position=2,
ascii=True):
FeatEnc.eval()
RN.eval()
x_sup, x_que, x_log_sup, x_log_que, label_sup, label_que, num_items, index = val_sessions_iter.next(
) # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
x_sup, x_que = Variable(x_sup).cuda(GPU), Variable(x_que).cuda(GPU)
x_log_sup, x_log_que = Variable(x_log_sup).cuda(GPU), Variable(
x_log_que).cuda(GPU)
label_sup = Variable(label_sup).cuda(GPU)
num_support = num_items[:, 0].detach().numpy().flatten(
) # If num_items was odd number, query has one more item.
num_query = num_items[:, 1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
x_sup = x_sup.unsqueeze(2) # 1x7*29 --> 1x7x1*29
x_que = x_que.unsqueeze(2) # 1x8*29 --> 1x8x1*29
x_feat_sup = FeatEnc(x_sup) # 1x7x1*64
x_feat_que = FeatEnc(x_que) # 1x8x1*64
y_hat = RN(x_feat_sup, x_feat_que, x_log_sup, x_log_que,
label_sup) # bx8
y_gt = label_que[:, :, 1]
y_mask = np.zeros((batch_sz, 10), dtype=np.float32)
for b in np.arange(batch_sz):
y_mask[b, :num_query[b]] = 1
y_mask = torch.FloatTensor(y_mask).cuda(GPU)
loss = F.binary_cross_entropy_with_logits(input=y_hat * y_mask,
target=y_gt.cuda(GPU) *
y_mask)
total_vloss += loss.item()
# Decision
y_prob = (torch.sigmoid(y_hat) * y_mask).detach().cpu().numpy()
y_pred = ((torch.sigmoid(y_hat) > 0.5).float() *
y_mask).detach().cpu().long().numpy()
# Eval, Submission
_y_gt = label_que[:, :, 1].detach().cpu().numpy()
if eval_mode is True:
for b in np.arange(batch_sz):
submit.append(y_pred[b, :num_query[b]].flatten())
gt.append(_y_gt[b, :num_query[b]].flatten())
# Prepare display
sample_sup = label_sup[0, :num_support[0],
1].detach().long().cpu().numpy().flatten()
sample_que = label_que[0, :num_query[0], 1].long().numpy().flatten()
sample_pred = y_pred[0, :num_query[0]].flatten()
sample_prob = y_prob[0, :num_query[0]].flatten()
# Acc
total_vcorrects += np.sum(
(y_pred == label_que[:, :, 1].long().numpy()) *
y_mask.cpu().numpy())
total_vquery += np.sum(num_query)
if (val_session + 1) % 400 == 0:
tqdm.write("S:" + np.array2string(sample_sup) + '\n' + "Q:" +
np.array2string(sample_que) + '\n' + "P:" +
np.array2string(sample_pred) + '\n' + "prob:" +
np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss:{1:.6f} vacc:{2:.4f}".format(
val_session, total_vloss / val_session,
total_vcorrects / total_vquery))
# Restore GPU memory
del loss, y_hat
# Avg.Acc
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss / (val_session + 1))
hist_vacc.append(total_vcorrects / total_vquery)
return submit
def main(args=None):
# parse arguments
if args is None:
args = sys.argv[1:]
args = parse_args(args)
# make sure keras is the minimum required version
check_keras_version()
# optionally choose specific GPU
if args.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu
keras.backend.tensorflow_backend.set_session(get_session())
# make save path if it doesn't exist
if args.save_path is not None and not os.path.exists(args.save_path):
os.makedirs(args.save_path)
# optionally load config parameters
if args.config:
args.config = read_config_file(args.config)
# create the generator
generator = create_generator(args)
# optionally load anchor parameters
anchor_params = None
if args.config and 'anchor_parameters' in args.config:
anchor_params = parse_anchor_parameters(args.config)
# load the model
print('Loading model, this may take a second...')
model = models.load_model(args.model, backbone_name=args.backbone)
# optionally convert the model
if args.convert_model:
model = models.convert_model(model, anchor_params=anchor_params)
# print model summary
# print(model.summary())
# start evaluation
if args.dataset_type == 'coco':
from ..utils.coco_eval import evaluate_coco
evaluate_coco(generator, model, args.score_threshold)
else:
average_precisions = evaluate(generator,
model,
iou_threshold=args.iou_threshold,
score_threshold=args.score_threshold,
max_detections=args.max_detections,
save_path=args.save_path)
# print evaluation
total_instances = []
precisions = []
for label, (average_precision,
num_annotations) in average_precisions.items():
print('{:.0f} instances of class'.format(num_annotations),
generator.label_to_name(label),
'with average precision: {:.4f}'.format(average_precision))
total_instances.append(num_annotations)
precisions.append(average_precision)
if sum(total_instances) == 0:
print('No test instances found.')
return
print(
'mAP using the weighted average of precisions among classes: {:.4f}'
.format(
sum([a * b for a, b in zip(total_instances, precisions)]) /
sum(total_instances)))
print('mAP: {:.4f}'.format(
sum(precisions) / sum(x > 0 for x in total_instances)))
return precisions, total_instances
def main(args=None):
# parse arguments
if args is None:
args = sys.argv[1:]
args = parse_args(args)
# optionally load config parameters
if args.config:
args.config = read_config_file(args, 'evaluation')
#print("----------------------------------")
#print("ARGUMENTS IN CONFIG FILE:")
#for sec in args.config.sections():
#print(sec, "=", dict(args.config.items(sec)))
#print("----------------------------------")
# for arg in vars(args):
# print(arg, "=", getattr(args, arg))
# exit()
# make sure keras is the minimum required version
check_keras_version()
# optionally choose specific GPU
if args.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu
keras.backend.tensorflow_backend.set_session(get_session())
# make save path if it doesn't exist
if args.save_path is not None and not os.path.exists(args.save_path):
os.makedirs(args.save_path)
# create the generator
generator = create_generator(args)
# optionally load anchor parameters
anchor_params = None
if args.config and 'anchor_parameters' in args.config:
anchor_params = parse_anchor_parameters(args.config)
# load the model
print('Loading model, this may take a second...')
model = models.load_model(args.model, backbone_name=args.backbone)
# optionally convert the model
if args.convert_model:
model = models.convert_model(model, anchor_params=anchor_params)
# print model summary
# print(model.summary())
# layer_outputs = []
# layer_names = ['res2c_relu', # C2
# 'res3b3_relu', # C3
# 'res4b22_relu', # C4
# 'P2', # P2
# 'P3', # P3
# 'P4', # P4
# # 'regression_submodel', # Subreg
# # 'classification_submodel', # SubClas
# 'regression', # Regression
# 'classification'] # Classification
#
# for layer in model.layers:
# if layer.name in layer_names:
# print('------------------------------------------------------------------------------------------------------------------')
# print('Layer found: ', layer.name)
# print('\tOutput:', layer.output)
# print('------------------------------------------------------------------------------------------------------------------')
# layer_outputs.append(layer.output)
#
# image = preprocess_image(generator.load_image(0))
# image, scale = resize_image(image, args.image_min_side, args.image_max_side)
#
# activation_model = keras.Model(inputs=model.input, outputs=layer_outputs)
# activations = activation_model.predict(np.expand_dims(image, axis=0))
#
# def display_activation(activations, col_size, row_size, act_index):
# activation = activations[act_index]
# activation_index=0
# fig, ax = plt.subplots(row_size, col_size, figsize=(row_size*2.5,col_size*1.5))
# for row in range(0,row_size):
# for col in range(0,col_size):
# ax[row][col].imshow(activation[0, :, :, activation_index], cmap='gray')
# activation_index += 1
# plt.savefig('layer_{}.png'.format(layer_names[act_index]))
#
# display_activation(activations, 8, 8, 0)
# display_activation(activations, 8, 8, 1)
# display_activation(activations, 8, 8, 2)
# display_activation(activations, 8, 8, 3)
# display_activation(activations, 8, 8, 4)
# display_activation(activations, 8, 8, 5)
#
# exit()
# start evaluation
if args.dataset_type == 'coco':
from ..utils.coco_eval import evaluate_coco
evaluate_coco(generator, model, args.score_threshold)
else:
average_precisions = evaluate(generator,
model,
iou_threshold=args.iou_threshold,
score_threshold=args.score_threshold,
max_detections=args.max_detections,
save_path=args.save_path,
mask_base_path=args.mask_folder)
# print evaluation
total_instances = []
precisions = []
F1s = []
for label, (recall, precision, F1, average_precision,
num_annotations) in average_precisions.items():
print('{:.0f} instances of class'.format(num_annotations),
generator.label_to_name(label),
'with average precision: {:.4f}'.format(average_precision),
'precision: {:.4f}'.format(precision),
'recall: {:.4f}'.format(recall),
'and F1-score: {:.4f}'.format(F1))
total_instances.append(num_annotations)
precisions.append(average_precision)
F1s.append(F1)
if sum(total_instances) == 0:
print('No test instances found.')
return
print(
'mAP using the weighted average of precisions among classes: {:.4f}'
.format(
sum([a * b for a, b in zip(total_instances, precisions)]) /
sum(total_instances)))
print('mAP: {:.4f}'.format(
sum(precisions) / sum(x > 0 for x in total_instances)))
print('mF1: {:.4f}'.format(
sum(F1s) / sum(x > 0 for x in total_instances)))
def validate(mval_loader, SM, CF_model, eval_mode):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter),
desc='val-sessions',
position=2,
ascii=True):
SM.eval()
x, labels, y_mask, num_items, index = val_sessions_iter.next(
) # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
# Sample data for 'support' and 'query': ex) 15 items = 7 sup, 8 queries...
num_support = num_items[:, 0].detach().numpy().flatten(
) # If num_items was odd number, query has one more item.
num_query = num_items[:, 1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
x[:, 10:, :41] = 0 # DELETE METALOG QUE
labels_shift = torch.zeros(batch_sz, 20, 1)
labels_shift[:, 1:, 0] = labels[:, :-1].float()
labels_shift[:, 11:, 0] = 0 # REMOVE QUERY LABELS!
sq_state = torch.zeros(batch_sz, 20, 1)
sq_state[:, :11, 0] = 1
x_audio = x[:, :, 41:].data.clone()
x_audio = Variable(x_audio, requires_grad=False).cuda(GPU)
x_emb_lastfm, x_lastfm = CF_model(x_audio)
x_lastfm = x_lastfm.cpu()
del x_emb_lastfm
# x: bx122*20
x = torch.cat((x_lastfm, x, labels_shift, sq_state),
dim=2).permute(0, 2, 1).cuda(GPU)
y_hat = SM(x)
# Calcultate BCE loss
loss = F.binary_cross_entropy_with_logits(
input=y_hat * y_mask.cuda(GPU),
target=labels.cuda(GPU) * y_mask.cuda(GPU))
total_vloss += loss.item()
# Decision
y_prob = torch.sigmoid(y_hat *
y_mask.cuda(GPU)).detach().cpu().numpy() # bx20
y_pred = (y_prob[:, 10:] >= 0.5).astype(np.int) # bx10
y_numpy = labels[:, 10:].numpy() # bx10
# Acc
y_query_mask = y_mask[:, 10:].numpy()
total_vcorrects += np.sum((y_pred == y_numpy) * y_query_mask)
total_vquery += np.sum(num_query)
# Eval, Submission
if eval_mode is not 0:
for b in np.arange(batch_sz):
submit.append(y_pred[b, :num_query[b]].flatten())
gt.append(y_numpy[b, :num_query[b]].flatten())
if (val_session + 1) % 400 == 0:
sample_sup = labels[0, :num_support[0]].long().numpy().flatten()
sample_que = y_numpy[0, :num_query[0]].astype(int)
sample_pred = y_pred[0, :num_query[0]]
sample_prob = y_prob[0, 10:10 + num_query[0]]
tqdm.write("S:" + np.array2string(sample_sup) + '\n' + "Q:" +
np.array2string(sample_que) + '\n' + "P:" +
np.array2string(sample_pred) + '\n' + "prob:" +
np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss:{1:.6f} vacc:{2:.4f}".format(
val_session, loss.item(), total_vcorrects / total_vquery))
del loss, y_hat, x # Restore GPU memory
# Avg.Acc
if eval_mode == 1:
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss / val_session)
hist_vacc.append(total_vcorrects / total_vquery)
return submit
def validate(mval_loader, SM, SMG, eval_mode, GPU):
tqdm.write("Validation...")
submit = []
gt = []
total_vloss = 0
total_vcorrects = 0
total_vquery = 0
val_sessions_iter = iter(mval_loader)
for val_session in trange(len(val_sessions_iter), desc='val-sessions', position=2, ascii=True):
SM.eval()
x, labels, y_mask, num_items, index = val_sessions_iter.next() # FIXED 13.Dec. SEPARATE LOGS. QUERY SHOULT NOT INCLUDE LOGS
# Sample data for 'support' and 'query': ex) 15 items = 7 sup, 8 queries...
num_support = num_items[:,0].detach().numpy().flatten() # If num_items was odd number, query has one more item.
num_query = num_items[:,1].detach().numpy().flatten()
batch_sz = num_items.shape[0]
# x: bx70*20
x = x.permute(0,2,1)
log_shift = torch.zeros(batch_sz,41,20)
log_shift[:,:,1:] = x[:,:41,:-1]
log_shift[:,:,11:] = 0 # DELETE LOG QUE
# labels_shift: bx1*20(model can only observe past labels)
labels_shift = torch.zeros(batch_sz,1,20)
labels_shift[:,0,1:] = labels[:,:-1].float()
labels_shift[:,0,11:] = 0 #!!! NOLABEL for previous QUERY
# support/query state labels: bx1*20
sq_state = torch.zeros(batch_sz,1,20)
sq_state[:,0,:11] = 1
# Pack x: bx72*20 (or bx32*20 if not using sup_logs)
x_1 = Variable(torch.cat((log_shift, x[:,41:,:], labels_shift, sq_state), 1)).cuda(GPU) # x: bx72*20
# Pre-trained Generator: forward & get qlog^
y_hat_qlog, _ = SMG(x_1) # y_hat: b*20
x_feat_T = torch.zeros(batch_sz, 72, 20)
x_feat_T[:,:70,:] = x.clone()
x_feat_T[:, 70,:10] = 1 # Sup/Que state indicator
x_feat_T[:, 71,:10] = labels[:,:10].clone()
x_feat_S = x_feat_T.clone()
x_feat_S[:, :41, 10:] = y_hat_qlog[:,:,10:].clone() # remove que-log
x_feat_S = Variable(x_feat_S).cuda(GPU)
del y_hat_qlog, x_1
# y
y = labels.clone() # bx20
# y_mask
y_mask_que = y_mask.clone()
y_mask_que[:,:10] = 0
y_hat = SM(x_feat_S)
# Calcultate BCE loss
loss = F.binary_cross_entropy_with_logits(input=y_hat*y_mask_que.cuda(GPU), target=y.cuda(GPU)*y_mask_que.cuda(GPU))
total_vloss += loss.item()
# Decision
y_prob = torch.sigmoid(y_hat*y_mask_que.cuda(GPU)).detach().cpu().numpy() # bx20
y_pred = (y_prob[:,10:]>0.5).astype(np.int) # bx10
y_numpy = labels[:,10:].numpy() # bx10
# Acc
total_vcorrects += np.sum((y_pred==y_numpy)*y_mask_que[:,10:].numpy())
total_vquery += np.sum(num_query)
# Restore GPU memory
del loss, y_hat
# Eval, Submission
if eval_mode is not 0:
for b in np.arange(batch_sz):
submit.append(y_pred[b,:num_query[b]].flatten())
gt.append(y_numpy[b,:num_query[b]].flatten())
if (val_session+1)%400 == 0:
sample_sup = labels[0,(10-num_support[0]):10].long().numpy().flatten()
sample_que = y_numpy[0,:num_query[0]].astype(int)
sample_pred = y_pred[0,:num_query[0]]
sample_prob = y_prob[0,10:10+num_query[0]]
tqdm.write("S:" + np.array2string(sample_sup) +'\n'+
"Q:" + np.array2string(sample_que) + '\n' +
"P:" + np.array2string(sample_pred) + '\n' +
"prob:" + np.array2string(sample_prob))
tqdm.write("val_session:{0:} vloss:{1:.6f} vacc:{2:.4f}".format(val_session,
total_vloss/total_vquery, total_vcorrects/total_vquery))
# Avg.Acc (skip labels only, log-generation acc is not implemented yet!)
if eval_mode==1:
aacc = evaluate(submit, gt)
tqdm.write("AACC={0:.6f}, FirstAcc={1:.6f}".format(aacc[0], aacc[1]))
hist_vloss.append(total_vloss/total_vquery)
hist_vacc.append(total_vcorrects/total_vquery)
return submit
