def single_extraction(self, hidden_states, sentence_indicator,
sentence_labels):
# extract salient sentences
sentences = []
for i in range(sentence_indicator.max() + 1):
mask = (sentence_indicator == i).long().cuda()
sentences.append(
torch.sum(hidden_states * mask.unsqueeze(-1), dim=1) /
(mask.sum(dim=1).view(-1, 1) + 1e-12))
sentences = torch.stack(sentences, dim=1)
sentence_logits = self.sentence_classifier(sentences)
sentence_logits = utils.mask_sentences(sentence_logits,
sentence_indicator)
if self.training:
if self.config.teacher_forcing:
gumbel_output = utils.convert_one_hot(sentence_labels,
sentence_logits.size(1))
else:
gumbel_output = utils.gumbel_softmax_topk(
sentence_logits.squeeze(-1), self.config.extraction_k)
else:
gumbel_output = torch.topk(sentence_logits.squeeze(-1),
self.config.extraction_k,
dim=-1)[1]
gumbel_output = utils.convert_one_hot(gumbel_output,
sentence_logits.size(1))
return gumbel_output, sentence_logits
def forward(
self,
input_ids=None,
attention_mask=None,
sentence_indicator=None,
sentence_labels=None,
decoder_input_ids=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
encoder_outputs=None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
labels=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# Encode if needed (training, first prediction pass)
if encoder_outputs is None:
# Convert encoder inputs in embeddings if needed
encoder_outputs = self.encoder(
input_ids=input_ids,
attention_mask=attention_mask,
inputs_embeds=inputs_embeds,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
elif return_dict and not isinstance(encoder_outputs, BaseModelOutput):
encoder_outputs = BaseModelOutput(
last_hidden_state=encoder_outputs[0],
hidden_states=encoder_outputs[1]
if len(encoder_outputs) > 1 else None,
attentions=encoder_outputs[2]
if len(encoder_outputs) > 2 else None,
)
hidden_states = encoder_outputs[0]
# extract salient sentences
if self.config.sequential_extraction:
gumbel_output, all_sentence_logits = self.selection_loop(
hidden_states, sentence_indicator, sentence_labels)
else:
gumbel_output, sentence_logits = self.single_extraction(
hidden_states, sentence_indicator, sentence_labels)
new_attention_mask = utils.convert_attention_mask(
sentence_indicator, gumbel_output)
masked_hidden_states = new_attention_mask.unsqueeze(-1) * hidden_states
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
if labels is not None and decoder_input_ids is None and decoder_inputs_embeds is None:
# get decoder inputs from shifting lm labels to the right
decoder_input_ids = self._shift_right(labels)
# If decoding with past key value states, only the last tokens
# should be given as an input
if past_key_values is not None:
assert labels is None, "Decoder should not use cached key value states when training."
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids[:, -1:]
if decoder_inputs_embeds is not None:
decoder_inputs_embeds = decoder_inputs_embeds[:, -1:]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.decoder.first_device)
hidden_states = hidden_states.to(self.decoder.first_device)
if decoder_input_ids is not None:
decoder_input_ids = decoder_input_ids.to(
self.decoder.first_device)
if attention_mask is not None:
attention_mask = attention_mask.to(self.decoder.first_device)
if decoder_attention_mask is not None:
decoder_attention_mask = decoder_attention_mask.to(
self.decoder.first_device)
# Decode
decoder_outputs = self.decoder(
input_ids=decoder_input_ids,
attention_mask=decoder_attention_mask,
inputs_embeds=decoder_inputs_embeds,
past_key_values=past_key_values,
encoder_hidden_states=masked_hidden_states,
encoder_attention_mask=new_attention_mask,
head_mask=decoder_head_mask,
encoder_head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = decoder_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.encoder.first_device)
self.lm_head = self.lm_head.to(self.encoder.first_device)
self.sentence_classifier = self.sentence_classifier.to(
self.encoder.first_device)
sequence_output = sequence_output.to(self.lm_head.weight.device)
if self.config.tie_word_embeddings:
# Rescale output before projecting on vocab
# See https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/transformer/transformer.py#L586
sequence_output = sequence_output * (self.model_dim**-0.5)
lm_logits = self.lm_head(sequence_output)
loss = None
if labels is not None:
loss_fct = nn.CrossEntropyLoss(ignore_index=-100)
loss = loss_fct(lm_logits.view(-1, lm_logits.size(-1)),
labels.view(-1))
# sentence_loss_fct = nn.BCEWithLogitsLoss()
# loss = 0
if self.config.sequential_extraction:
sim_loss = nn.CosineSimilarity()
pooled_embedding = hidden_states.mean(1)
pooled_extractive = masked_hidden_states.mean(1)
loss -= sim_loss(pooled_embedding, pooled_extractive).mean()
## sentence_loss_fct = nn.CrossEntropyLoss(ignore_index=-1)
# for i, logits in enumerate(all_sentence_logits):
# loss += sentence_loss_fct(logits, sentence_labels[:, i])
else:
sentence_label_one_hot = utils.convert_one_hot(
sentence_labels, sentence_logits.size(1)).float().detach()
loss += 2 * -torch.mean(
torch.sum(sentence_label_one_hot * torch.log_softmax(
sentence_logits.squeeze(-1), dim=-1),
dim=-1))
# loss += 2*sentence_loss_fct(sentence_logits.squeeze(-1)[sentence_mask], sentence_label_one_hot[sentence_mask])
# loss += 2*loss_fct(sentence_logits.view(-1, sentence_logits.size(-1)), sentence_label_one_hot.view(-1))
# TODO(thom): Add z_loss https://github.com/tensorflow/mesh/blob/fa19d69eafc9a482aff0b59ddd96b025c0cb207d/mesh_tensorflow/layers.py#L666
if not return_dict:
output = (lm_logits, ) + decoder_outputs[1:] + encoder_outputs
return ((loss, ) + output) if loss is not None else output
return ExtractorAbstractorOutput(
loss=loss,
logits=lm_logits,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
cross_attentions=decoder_outputs.cross_attentions,
encoder_last_hidden_state=encoder_outputs.last_hidden_state,
encoder_hidden_states=encoder_outputs.hidden_states,
encoder_attentions=encoder_outputs.attentions,
extracted_attentions=new_attention_mask,
gumbel_output=None if self.training else gumbel_output)
def load_dataset(self, dataset_filepaths, parameters, annotator):
'''
dataset_filepaths : dictionary with keys 'train', 'valid', 'test'
'''
start_time = time.time()
print('Load dataset... ', end='', flush=True)
if parameters['do_split']:
dataset_filepaths = self._do_split(parameters)
all_pretrained_tokens = []
if parameters['token_pretrained_embedding_filepath'] != '':
all_pretrained_tokens = utils_nlp.load_tokens_from_pretrained_token_embeddings(
parameters)
if self.verbose:
print("len(all_pretrained_tokens): {0}".format(
len(all_pretrained_tokens)))
# Load pretraining dataset to ensure that index to label is compatible to the pretrained model,
# and that token embeddings that are learned in the pretrained model are loaded properly.
all_tokens_in_pretraining_dataset = []
self.UNK_TOKEN_INDEX = 0
self.PADDING_TOKEN_INDEX = 1
self.tokens_mapped_to_unk = []
self.UNK = '_UNK_'
self.PAD = '_PAD_'
self.unique_labels = []
labels = {}
tokens = {}
token_count = {}
label_count = {}
self.max_tokens = -1
# Look for max length
for dataset_type in ['train', 'valid', 'test']:
max_tokens = self._find_max_length(
dataset_filepaths.get(dataset_type, None),
annotator,
force_preprocessing=parameters['do_split'])
if parameters['max_length_sentence'] == -1:
self.max_tokens = max(self.max_tokens, max_tokens)
else:
if self.max_tokens == -1:
self.max_tokens = max_tokens
self.max_tokens = min(parameters['max_length_sentence'],
self.max_tokens)
for dataset_type in ['train', 'valid', 'test']:
labels[dataset_type], tokens[dataset_type], token_count[
dataset_type], label_count[dataset_type] = self._parse_dataset(
dataset_filepaths.get(dataset_type, None),
annotator,
force_preprocessing=parameters['do_split'],
limit=self.max_tokens)
if self.verbose: print("dataset_type: {0}".format(dataset_type))
if self.verbose:
print("len(token_count[dataset_type]): {0}".format(
len(token_count[dataset_type])))
token_count['all'] = {}
for token in list(token_count['train'].keys()) + list(
token_count['valid'].keys()) + list(
token_count['test'].keys()):
token_count['all'][token] = token_count['train'].get(
token, 0) + token_count['valid'].get(
token, 0) + token_count['test'].get(token, 0)
for dataset_type in dataset_filepaths.keys():
if self.verbose: print("dataset_type: {0}".format(dataset_type))
if self.verbose:
print("len(token_count[dataset_type]): {0}".format(
len(token_count[dataset_type])))
label_count['all'] = {}
for character in list(label_count['train'].keys()) + list(
label_count['valid'].keys()) + list(
label_count['test'].keys()):
label_count['all'][character] = label_count['train'].get(
character, 0) + label_count['valid'].get(
character, 0) + label_count['test'].get(character, 0)
token_count['all'] = utils.order_dictionary(token_count['all'],
'value_key',
reverse=True)
label_count['all'] = utils.order_dictionary(label_count['all'],
'key',
reverse=False)
token_to_index = {}
token_to_index[self.UNK] = self.UNK_TOKEN_INDEX
token_to_index[self.PAD] = self.PADDING_TOKEN_INDEX
iteration_number = 0
number_of_unknown_tokens = 0
if self.verbose:
print("parameters['remap_unknown_tokens_to_unk']: {0}".format(
parameters['remap_unknown_tokens_to_unk']))
if self.verbose:
print("len(token_count['train'].keys()): {0}".format(
len(token_count['train'].keys())))
for token, count in token_count['all'].items():
if iteration_number == self.UNK_TOKEN_INDEX:
iteration_number += 1
if iteration_number == self.PADDING_TOKEN_INDEX:
iteration_number += 1
if parameters['remap_unknown_tokens_to_unk'] and (
token_count['train'].get(token, 0) == 0
or parameters['load_only_pretrained_token_embeddings']
) and not utils_nlp.is_token_in_pretrained_embeddings(
token, all_pretrained_tokens, parameters
) and token not in all_tokens_in_pretraining_dataset:
if self.verbose: print("token: {0}".format(token))
if self.verbose:
print("token.lower(): {0}".format(token.lower()))
if self.verbose:
print("re.sub('\d', '0', token.lower()): {0}".format(
re.sub('\d', '0', token.lower())))
token_to_index[token] = self.UNK_TOKEN_INDEX
number_of_unknown_tokens += 1
self.tokens_mapped_to_unk.append(token)
else:
token_to_index[token] = iteration_number
iteration_number += 1
if self.verbose:
print("number_of_unknown_tokens: {0}".format(
number_of_unknown_tokens))
infrequent_token_indices = []
for token, count in token_count['train'].items():
if 0 < count <= parameters['remap_to_unk_count_threshold']:
infrequent_token_indices.append(token_to_index[token])
if self.verbose:
print("len(token_count['train']): {0}".format(
len(token_count['train'])))
if self.verbose:
print("len(infrequent_token_indices): {0}".format(
len(infrequent_token_indices)))
label_to_index = {}
iteration_number = 0
for label, count in label_count['all'].items():
label_to_index[label] = iteration_number
iteration_number += 1
self.unique_labels.append(label)
if self.verbose:
print('self.unique_labels: {0}'.format(self.unique_labels))
if self.verbose:
print('token_count[\'train\'][0:10]: {0}'.format(
list(token_count['train'].items())[0:10]))
token_to_index = utils.order_dictionary(token_to_index,
'value',
reverse=False)
if self.verbose: print('token_to_index: {0}'.format(token_to_index))
index_to_token = utils.reverse_dictionary(token_to_index)
if parameters['remap_unknown_tokens_to_unk'] == 1:
index_to_token[self.UNK_TOKEN_INDEX] = self.UNK
index_to_token[self.PADDING_TOKEN_INDEX] = self.PAD
if self.verbose: print('index_to_token: {0}'.format(index_to_token))
if self.verbose:
print('label_count[\'train\']: {0}'.format(label_count['train']))
label_to_index = utils.order_dictionary(label_to_index,
'value',
reverse=False)
if self.verbose: print('label_to_index: {0}'.format(label_to_index))
index_to_label = utils.reverse_dictionary(label_to_index)
if self.verbose: print('index_to_label: {0}'.format(index_to_label))
if self.verbose:
print('labels[\'train\'][0:10]: {0}'.format(labels['train'][0:10]))
if self.verbose:
print('tokens[\'train\'][0:10]: {0}'.format(tokens['train'][0:10]))
# Map tokens and labels to their indices
token_indices = {}
label_indices = {}
token_lengths = {}
token_indices_padded = {}
for dataset_type in dataset_filepaths.keys():
token_indices[dataset_type] = []
token_lengths[dataset_type] = []
token_indices_padded[dataset_type] = []
# Tokens
for token_sequence in tokens[dataset_type]:
token_indices[dataset_type].append(
[token_to_index[token] for token in token_sequence])
token_lengths[dataset_type].append(len(token_sequence))
# Labels
label_indices[dataset_type] = []
for label in labels[dataset_type]:
label_indices[dataset_type].append(label_to_index[label])
# Pad tokens
for dataset_type in dataset_filepaths.keys():
token_indices_padded[dataset_type] = []
token_indices_padded[dataset_type] = [
utils.pad_list(temp_token_indices, self.max_tokens,
self.PADDING_TOKEN_INDEX)
for temp_token_indices in token_indices[dataset_type]
]
if self.verbose:
print('token_lengths[\'train\'][0:10]: {0}'.format(
token_lengths['train'][0:10]))
if self.verbose:
print('token_indices[\'train\'][0][0:10]: {0}'.format(
token_indices['train'][0][0:10]))
if self.verbose:
print('token_indices_padded[\'train\'][0][0:10]: {0}'.format(
token_indices_padded['train'][0][0:10]))
if self.verbose:
print('label_indices[\'train\'][0:10]: {0}'.format(
label_indices['train'][0:10]))
self.token_to_index = token_to_index
self.index_to_token = index_to_token
self.token_indices = token_indices
self.label_indices = label_indices
self.token_indices_padded = token_indices_padded
self.token_lengths = token_lengths
self.tokens = tokens
self.labels = labels
self.index_to_label = index_to_label
self.label_to_index = label_to_index
if self.verbose:
print("len(self.token_to_index): {0}".format(
len(self.token_to_index)))
if self.verbose:
print("len(self.index_to_token): {0}".format(
len(self.index_to_token)))
self.number_of_classes = max(self.index_to_label.keys()) + 1
self.vocabulary_size = max(self.index_to_token.keys()) + 1
if self.verbose:
print("self.number_of_classes: {0}".format(self.number_of_classes))
if self.verbose:
print("self.vocabulary_size: {0}".format(self.vocabulary_size))
self.infrequent_token_indices = infrequent_token_indices
# Binarize label
label_vector_indices = {}
for dataset_type, labels in label_indices.items():
label_vector_indices[dataset_type] = []
for label in labels:
label_vector_indices[dataset_type].append(
utils.convert_one_hot(label, self.number_of_classes))
self.label_vector_indices = label_vector_indices
elapsed_time = time.time() - start_time
print('done ({0:.2f} seconds)'.format(elapsed_time))
