def post(self, path):
user = users.get_current_user()
if user is None:
self.redirect(users.create_login_url(self.request.uri))
return
if not utils.is_editor(user):
# Error 401, user is not authorized.
self.error(401)
self.template_render('401.html', {})
return
plasmid = models.Plasmid.get_by_key_name(path)
features = json.loads(plasmid.features)
# Check if this is a delete request.
if self.request.get('delete', None) is None:
# It is a new feature request.
form = FeatureForm(data=self.request.POST)
if form.is_valid():
features.append({
'name': form.cleaned_data['name'],
'start': form.cleaned_data['start'],
'end': form.cleaned_data['end'],
'orientation': form.cleaned_data['orientation'],
'ftype': form.cleaned_data['ftype'],
})
# Save feature to data store.
plasmid.features = json.dumps(features)
plasmid.put()
# Clean form.
form = FeatureForm()
else:
# It is a delete request.
delete_feature = int(self.request.get('delete'))
features.pop(delete_feature)
plasmid.features = json.dumps(features)
plasmid.put()
form = FeatureForm()
template_vals = {
'plasmid': plasmid,
'zip_features': enumerate(features),
'can_edit': utils.is_editor(users.get_current_user()),
'form': form,
}
self.template_render('plasmid.html', template_vals)
def post(self):
"""Handle new plasmid data post."""
user = users.get_current_user()
if user is None:
self.redirect(users.create_login_url(self.request.uri))
return
if not utils.is_editor(user):
# Error 401, user is not authorized.
self.error(401)
self.template_render('401.html', {})
return
form = PlasmidForm(data=self.request.POST)
if form.is_valid():
name = form.cleaned_data['name']
seq = form.cleaned_data['seq']
comments = form.cleaned_data['comments']
nid = utils.get_new_entity_id('plasmid')
new_plasmid = models.Plasmid(
key_name = str(nid),
nid = nid,
name = name,
seq = seq,
comments = comments,
features = '[]'
)
new_plasmid.put()
message = 'Plasmid #%d has been stored.' % nid
template_vals = {
'form': PlasmidForm(),
'entity': 'plasmid',
'message': message,
}
else:
template_vals = {
'form': form,
'entity': 'plasmid',
'message': ''
}
self.template_render('new_entity.html', template_vals)
def get(self, path):
user = users.get_current_user()
plasmid = models.Plasmid.get_by_key_name(path)
if not plasmid:
self.template_render('404.html', {})
return
features = json.loads(plasmid.features)
template_vals = {
'plasmid': plasmid,
'zip_features': enumerate(features),
'can_edit': user and utils.is_editor(user),
'form': FeatureForm()
}
self.template_render('plasmid.html', template_vals)
def post(self):
"""Handle new prep data post."""
user = users.get_current_user()
if user is None:
self.redirect(users.create_login_url(self.request.uri))
return
if not utils.is_editor(user):
# Error 401, user is not authorized.
self.error(401)
self.template_render('401.html')
return
form = PrepForm(data=self.request.POST)
if form.is_valid():
preptype = form.cleaned_data['preptype']
plasmid_id = form.cleaned_data['plasmid_id']
comments = form.cleaned_data['comments']
nid = utils.get_new_entity_id('prep')
new_prep = models.Prep(
key_name = str(nid),
nid = nid,
plasmid_id = plasmid_id,
str_id = utils.get_str_id(plasmid_id, preptype),
comments = comments
)
new_prep.put()
message = 'Prep %s has been stored.' % new_prep.str_id
template_vals = {
'form': PrepForm(),
'entity': 'prep',
'message': message,
}
else:
template_vals = {
'form': form,
'entity': 'prep',
'message': ''
}
self.template_render('new_entity.html', template_vals)