def test_badge_ok_master():
"""Test badge for an OK build using legacy 'master' branch"""
with utils.mock_systems(systems.app, [sys2]):
c = systems.app.test_client()
rv = c.get('/0/badge.svg?branch=master')
assert b'stable release-2.11.0-brightgreen.svg' in rv.data
assert rv.status_code == 302
def test_badge_old_master():
"""Test redirect for old badge URL using legacy 'master' branch"""
with utils.mock_systems(systems.app, [sys2]):
c = systems.app.test_client()
rv = c.get('/?sysstat=0&branch=master')
assert b'"/0/badge.svg?branch=main"' in rv.data
assert rv.status_code == 301
def test_badge_failed():
"""Test badge for a failed build"""
with utils.mock_systems(systems.app, [sys1]):
c = systems.app.test_client()
rv = c.get('/0/badge.svg?branch=develop')
assert b'nightly build-never-red.svg' in rv.data
assert rv.status_code == 302
def test_build_failed():
"""Test the build information page with a system that failed"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/1/build/3')
assert (b'was tested but <span class="build_fail">does not work'
in rv.data)
def test_system_class():
"""Test the System class"""
with utils.mock_systems(systems.app, [sys1, sys2, sys3, sys4]):
with systems.app.app_context():
s, s2, s3, s4 = systems.get_all_systems()
for i in range(2): # 2nd run should hit cache in most cases
assert s.name == 'sys1'
assert s.repo == 'repo1'
assert s.title == 'sys1 title'
assert s.pmid == '1234'
assert s.description == 'sys1 desc'
assert s.homepage == 'sys1 home'
assert s.tags == ["foo", "bar"]
assert s.pubmed_title == 'Smith J. Nature 99, 2014'
assert s.accessions == ['PDBDEV_00000001', 'foo']
assert s.pdbdev_accessions == ['PDBDEV_00000001']
assert s.module_prereqs == ['imp', 'modeller', 'python3/scikit']
assert s.conda_prereqs == ['imp', 'modeller', 'scikit-learn']
assert s.readme == u'foobar'
assert s2.readme == ''
assert s2.pmid is None
assert s2.pubmed_title is None
assert s3.pubmed_title == 'Smith J, Jones A et al. Nature 99, 2014'
assert s3.homepage == 'https://integrativemodeling.org/systems/22'
# fly_genome system must use Python 2
assert s3.name == "fly_genome"
assert s3.module_prereqs == ['imp', 'modeller', 'python2/scikit']
# protobuf must use Python 2
assert s4.module_prereqs == ['imp', 'modeller', 'python2/protobuf']
def test_all_builds():
"""Test the all-builds page"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/all-builds')
assert (b'<a class="buildbox build_fail" title="Build failed"'
in rv.data)
assert b'<a class="buildbox build_ok" title="Build OK"' in rv.data
def test_unknown_build():
"""Test the build information page with an unknown system/build"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/1/build/100')
assert rv.status_code == 404
rv = c.get('/100/build/1')
assert rv.status_code == 404
def test_badge_bad():
"""Test badges for bad system or branch"""
with utils.mock_systems(systems.app, [sys1]):
c = systems.app.test_client()
rv = c.get('/9/badge.svg?branch=develop')
assert rv.status_code == 404
rv = c.get('/0/badge.svg?branch=foo')
assert rv.status_code == 400
def test_summary_only_tags():
"""Test the summary page with only one tag shown"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/?tag=bar')
assert b'<a class="sysmore" href="sys1 home">[more...]</a>' in rv.data
assert (b'<a class="sysmore" href="sys2 home">[more...]</a>'
not in rv.data)
assert b'<a class="tag" href="?tag=foo">foo</a>' in rv.data
assert b'<a class="tag" href="?tag=bar">bar</a>' in rv.data
assert b'<a class="tag" href="?tag=baz">baz</a>' in rv.data
def test_500():
"""Test custom error handler for an internal error"""
with utils.mock_systems(systems.app, [sys1]):
c = systems.app.test_client()
# Force an error
systems.app.config['SYSTEM_TOP'] = '/not/exist'
# Don't throw an exception but instead return a 500 HTTP response
systems.app.testing = False
rv = c.get('/')
assert b'An unexpected error has occurred' in rv.data
assert rv.status_code == 500
def test_list(self):
"""Test the /api/list route"""
with utils.mock_systems(systems.app, [sys1]):
c = systems.app.test_client()
rv = c.get('/api/list')
# Should be a JSON string listing all systems
assert b'"homepage": "sys1 home"' in rv.data
assert (b'"conda_prereqs": ["imp", "modeller", "scikit-learn"]'
in rv.data)
j = json.loads(rv.data)
assert len(j) == 1
assert j[0]['pmid'] == '1234'
def test_summary_all_tags():
"""Test the summary page with all tags shown"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/')
assert b'<a class="sysmore" href="sys1 home">[more...]</a>' in rv.data
assert b'<a class="sysmore" href="sys2 home">[more...]</a>' in rv.data
assert b'<a class="tag" href="?tag=foo">foo</a>' in rv.data
assert b'<a class="tag" href="?tag=bar">bar</a>' in rv.data
assert b'<a class="tag" href="?tag=baz">baz</a>' in rv.data
assert (b'<img src="//integrativemodeling.org/systems/info/'
b'sys2/thumb.png"' in rv.data)
def test_unknown_system():
"""Test the system information page given an unknown system ID"""
with utils.mock_systems(systems.app, [sys1]):
c = systems.app.test_client()
rv = c.get('/100')
assert rv.status_code == 404
def test_system():
"""Test the system information page"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
_ = c.get('/1')
def test_build_ok():
"""Test the build information page with a system that passed"""
with utils.mock_systems(systems.app, [sys1, sys2]):
c = systems.app.test_client()
rv = c.get('/1/build/1')
assert b'has been verified to work with:' in rv.data