示例#1
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文件： tools.py 项目： ctanes/decontam 
 def annotate(self, R1, R2, pct, frac):
     ids = utils.parse_read_ids(R1)
     return [(id, True) for id in ids]
示例#2
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文件： tools.py 项目： ctanes/decontam 
 def annotate(self, R1, R2, pct, frac):
     sam_file, stderr_file = self._run(R1, R2)
     mapped = self._get_mapped_reads(sam_file.name, pct, frac)
     ids = utils.parse_read_ids(R1)
     return [(id, True if id in mapped else False) for id in ids]
示例#3
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 def annotate(self, R1, R2):
     ids = utils.parse_read_ids(R1)
     return [(id, False) for id in ids]
示例#4
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文件： tools.py 项目： ctanes/decontam 
 def annotate(self, R1, R2, pct, frac):
     ids = utils.parse_read_ids(R1)
     return [
         (id, True if random.random() <= self.fraction_human else False)
         for id in ids]
示例#5
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 def annotate(self, R1, R2, pct, frac, output_dir):
     sam_file, stderr_file = self._run(R1, R2, output_dir)
     mapped = self._get_mapped_reads(sam_file.name, pct, frac)
     ids = utils.parse_read_ids(R1)
     return [(id, True if id in mapped else False) for id in ids]
示例#6
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 def annotate(self, R1, R2, pct, frac, output_dir):
     mapped = self._get_mapped_reads(self.sam_fp, pct, frac)
     ids = utils.parse_read_ids(R1)
     return [(id, True if id in mapped else False) for id in ids]
示例#7
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 def annotate(self, R1, R2, pct, frac, output_dir):
     ids = utils.parse_read_ids(R1)
     return [(id, True) for id in ids]
示例#8
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 def annotate(self, R1, R2, pct, frac, output_dir):
     ids = utils.parse_read_ids(R1)
     return [(id, True if random.random() <= self.fraction_human else False)
             for id in ids]
示例#9
0
文件： tools.py 项目： ctanes/decontam 
 def annotate(self, R1, R2, pct, frac):
     ids = utils.parse_read_ids(R1)
     return [(id, False) for id in ids]