def save_to_cfg(self):
self.cfg['overviews']['number_ov'] = str(self.number_ov)
self.cfg['overviews']['ov_active'] = str(
[int(ov.active) for ov in self.__overviews])
self.cfg['overviews']['ov_centre_sx_sy'] = str(
[utils.round_xy(ov.centre_sx_sy) for ov in self.__overviews])
self.cfg['overviews']['ov_rotation'] = str(
[ov.rotation for ov in self.__overviews])
self.cfg['overviews']['ov_size'] = str(
[ov.frame_size for ov in self.__overviews])
self.cfg['overviews']['ov_size_selector'] = str(
[ov.frame_size_selector for ov in self.__overviews])
self.cfg['overviews']['ov_pixel_size'] = str(
[ov.pixel_size for ov in self.__overviews])
self.cfg['overviews']['ov_dwell_time'] = str(
[ov.dwell_time for ov in self.__overviews])
self.cfg['overviews']['ov_dwell_time_selector'] = str(
[ov.dwell_time_selector for ov in self.__overviews])
self.cfg['overviews']['ov_wd_stig_xy'] = str(
[ov.wd_stig_xy for ov in self.__overviews])
self.cfg['overviews']['ov_acq_interval'] = str(
[ov.acq_interval for ov in self.__overviews])
self.cfg['overviews']['ov_acq_interval_offset'] = str(
[ov.acq_interval_offset for ov in self.__overviews])
self.cfg['overviews']['ov_viewport_images'] = json.dumps(
[ov.vp_file_path for ov in self.__overviews])
self.cfg['debris']['auto_detection_area'] = str(
self.use_auto_debris_area)
self.cfg['debris']['detection_area'] = str(
[ov.debris_detection_area for ov in self.__overviews])
self.cfg['debris']['auto_area_margin'] = str(
self.auto_debris_area_margin)
self.cfg['debris']['show_detection_area'] = str(
self.detection_area_visible)
# Stub OV
self.cfg['overviews']['stub_ov_centre_sx_sy'] = str(
utils.round_xy(self.__stub_overview.centre_sx_sy))
self.cfg['overviews']['stub_ov_grid_size_selector'] = str(
self.__stub_overview.grid_size_selector)
self.cfg['overviews']['stub_ov_overlap'] = str(
self.__stub_overview.overlap)
self.cfg['overviews']['stub_ov_frame_size_selector'] = str(
self.__stub_overview.frame_size_selector)
self.cfg['overviews']['stub_ov_pixel_size'] = str(
self.__stub_overview.pixel_size)
self.cfg['overviews']['stub_ov_dwell_time'] = str(
self.__stub_overview.dwell_time)
self.cfg['overviews']['stub_ov_viewport_image'] = str(
self.__stub_overview.vp_file_path)
def save_to_cfg(self):
"""Save current parameters to the self.cfg ConfigParser object.
The stage calibration parameters are saved to self.syscfg whenever
the calibration is changed at runtime.
"""
# Stage calibration parameters
self.cfg[self._device]['stage_scale_factor_x'] = str(
self.stage_calibration[0])
self.cfg[self._device]['stage_scale_factor_y'] = str(
self.stage_calibration[1])
self.cfg[self._device]['stage_rotation_angle_x'] = str(
self.stage_calibration[2])
self.cfg[self._device]['stage_rotation_angle_y'] = str(
self.stage_calibration[3])
# Viewport parameters
self.cfg['viewport']['vp_centre_dx_dy'] = str(
utils.round_xy(self.vp_centre_dx_dy))
self.cfg['viewport']['vp_scale'] = str(round(self.vp_scale, 3))
self.cfg['viewport']['sv_scale_tile'] = str(
round(self.sv_scale_tile, 3))
self.cfg['viewport']['sv_scale_ov'] = str(round(self.sv_scale_ov, 3))
self.cfg['viewport']['sv_offset_x_tile'] = str(self.sv_tile_vx_vy[0])
self.cfg['viewport']['sv_offset_y_tile'] = str(self.sv_tile_vx_vy[1])
self.cfg['viewport']['sv_offset_x_ov'] = str(self.sv_ov_vx_vy[0])
self.cfg['viewport']['sv_offset_y_ov'] = str(self.sv_ov_vx_vy[1])
def save_to_cfg(self):
self.cfg['imported']['number_imported'] = str(self.number_imported)
self.cfg['imported']['image_src'] = json.dumps(
[img.image_src for img in self.__imported_images])
self.cfg['imported']['description']= json.dumps(
[img.description for img in self.__imported_images])
self.cfg['imported']['centre_sx_sy']= str(
[utils.round_xy(img.centre_sx_sy)
for img in self.__imported_images])
self.cfg['imported']['rotation']= str(
[img.rotation for img in self.__imported_images])
self.cfg['imported']['size']= str(
[img.size for img in self.__imported_images])
self.cfg['imported']['pixel_size']= str(
[img.pixel_size for img in self.__imported_images])
self.cfg['imported']['transparency']= str(
[img.transparency for img in self.__imported_images])
def save_to_cfg(self):
"""Save current grid configuration to ConfigParser object self.cfg.
The reasons why all grid parameters are saved as lists in the user
configuration are backward compatibility and readability."""
self.cfg['grids']['number_grids'] = str(self.number_grids)
self.cfg['grids']['grid_active'] = str(
[int(grid.active) for grid in self.__grids])
self.cfg['grids']['origin_sx_sy'] = str(
[utils.round_xy(grid.origin_sx_sy) for grid in self.__grids])
self.cfg['grids']['rotation'] = str(
[grid.rotation for grid in self.__grids])
self.cfg['grids']['size'] = str(
[grid.size for grid in self.__grids])
self.cfg['grids']['overlap'] = str(
[grid.overlap for grid in self.__grids])
self.cfg['grids']['row_shift'] = str(
[grid.row_shift for grid in self.__grids])
self.cfg['grids']['active_tiles'] = str(
[grid.active_tiles for grid in self.__grids])
self.cfg['grids']['tile_size'] = str(
[grid.frame_size for grid in self.__grids])
self.cfg['grids']['tile_size_selector'] = str(
[grid.frame_size_selector for grid in self.__grids])
self.cfg['grids']['pixel_size'] = str(
[grid.pixel_size for grid in self.__grids])
self.cfg['grids']['dwell_time'] = str(
[grid.dwell_time for grid in self.__grids])
self.cfg['grids']['dwell_time_selector'] = str(
[grid.dwell_time_selector for grid in self.__grids])
self.cfg['grids']['display_colour'] = str(
[grid.display_colour for grid in self.__grids])
self.cfg['grids']['wd_stig_xy'] = str(
[grid.wd_stig_xy for grid in self.__grids])
self.cfg['grids']['acq_interval'] = str(
[grid.acq_interval for grid in self.__grids])
self.cfg['grids']['acq_interval_offset'] = str(
[grid.acq_interval_offset for grid in self.__grids])
self.cfg['grids']['use_wd_gradient'] = str(
[int(grid.use_wd_gradient) for grid in self.__grids])
self.cfg['grids']['wd_gradient_ref_tiles'] = str(
[grid.wd_gradient_ref_tiles for grid in self.__grids])
self.cfg['grids']['wd_gradient_params'] = str(
[grid.wd_gradient_params for grid in self.__grids])
# Save the working distances and stigmation parameters of those tiles
# that are active and/or selected for the autofocus and/or the
# working distance gradient.
wd_stig_dict = {}
for g in range(self.number_grids):
for t in range(self.__grids[g].number_tiles):
tile_key = str(g) + '.' + str(t)
if (self.__grids[g][t].wd > 0
and (self.__grids[g][t].tile_active
or self.__grids[g][t].autofocus_active
or self.__grids[g][t].wd_grad_active)):
# Only save tiles with WD != 0 which are active or
# selected for autofocus or wd gradient.
wd_stig_dict[tile_key] = [
round(self.__grids[g][t].wd, 9),
round(self.__grids[g][t].stig_xy[0], 6),
round(self.__grids[g][t].stig_xy[1], 6)
]
# Save as JSON string in config:
self.cfg['grids']['wd_stig_params'] = json.dumps(wd_stig_dict)
# Also save list of autofocus reference tiles.
self.cfg['autofocus']['ref_tiles'] = json.dumps(
self.autofocus_ref_tiles)
# Save tile previews currently held in memory as pngs
base_dir = self.cfg['acq']['base_dir']
for g in range(self.number_grids):
for t in range(self.__grids[g].number_tiles):
preview_path = utils.tile_preview_save_path(
base_dir, g, t)
img = self.__grids[g][t].preview_img
if img is not None:
img.save(preview_path)