def test():
print('enter test')
log_fpath1 = utool.get_app_resource_dir('utool', 'test_logfile1.txt')
log_fpath2 = utool.get_app_resource_dir('utool', 'test_logfile2.txt')
utool.start_logging(log_fpath1, 'w')
func1()
func2()
utool.stop_logging()
print('\n\n')
print('This line is NOT logged')
print('\n\n')
utool.start_logging(log_fpath2, 'w')
print('This line is logged')
utool.stop_logging()
log1 = utool.read_from(log_fpath1, verbose=False)
log2 = utool.read_from(log_fpath2, verbose=False)
target1 = utool.unindent('''
<__LOG_START__>
logging to log_fpath=%r
[test][func1]enter func1
[test][func1]exit func1
[test][func2]enter func2
[test][func2][func1]enter func1
[test][func2][func1]exit func1
[test][func2]exit func2
<__LOG_STOP__>''' % log_fpath1).strip()
target2 = utool.unindent('''
<__LOG_START__>
logging to log_fpath=%r
[test]This line is logged
<__LOG_STOP__>''' % log_fpath2).strip()
output1 = remove_timestamp(log1).strip()
output2 = remove_timestamp(log2).strip()
try:
assert target1 == output1, 'target1 failed'
assert target2 == output2, 'target2 failed'
builtins.print('TEST PASSED')
except AssertionError:
builtins.print('\n<!!! TEST FAILED !!!>')
builtins.print('\ntarget1:')
builtins.print(target1)
builtins.print('\noutput1:')
builtins.print(output1)
builtins.print('\ntarget2:')
builtins.print(target2)
builtins.print('\noutput2:')
builtins.print(output2)
builtins.print('</!!! TEST FAILED !!!>\n')
raise
def test():
print('enter test')
log_fpath1 = utool.get_app_resource_dir('utool', 'test_logfile1.txt')
log_fpath2 = utool.get_app_resource_dir('utool', 'test_logfile2.txt')
utool.start_logging(log_fpath1, 'w')
func1()
func2()
utool.stop_logging()
print('\n\n')
print('This line is NOT logged')
print('\n\n')
utool.start_logging(log_fpath2, 'w')
print('This line is logged')
utool.stop_logging()
log1 = utool.read_from(log_fpath1, verbose=False)
log2 = utool.read_from(log_fpath2, verbose=False)
target1 = utool.unindent('''
<__LOG_START__>
logging to log_fpath=%r
[test][func1]enter func1
[test][func1]exit func1
[test][func2]enter func2
[test][func2][func1]enter func1
[test][func2][func1]exit func1
[test][func2]exit func2
<__LOG_STOP__>''' % log_fpath1).strip()
target2 = utool.unindent('''
<__LOG_START__>
logging to log_fpath=%r
[test]This line is logged
<__LOG_STOP__>''' % log_fpath2).strip()
output1 = remove_timestamp(log1).strip()
output2 = remove_timestamp(log2).strip()
try:
assert target1 == output1, 'target1 failed'
assert target2 == output2, 'target2 failed'
builtins.print('TEST PASSED')
except AssertionError:
builtins.print('\n<!!! TEST FAILED !!!>')
builtins.print('\ntarget1:')
builtins.print(target1)
builtins.print('\noutput1:')
builtins.print(output1)
builtins.print('\ntarget2:')
builtins.print(target2)
builtins.print('\noutput2:')
builtins.print(output2)
builtins.print('</!!! TEST FAILED !!!>\n')
raise
def get_flann_fpath(dpts,
cache_dir='default',
cfgstr='',
flann_params={},
use_params_hash=True,
use_data_hash=True,
appname='vtool',
verbose=True):
""" returns filepath for flann index """
if cache_dir == 'default':
if verbose:
print('[flann] using default cache dir')
cache_dir = utool.get_app_resource_dir(appname)
utool.ensuredir(cache_dir)
flann_cfgstr = get_flann_cfgstr(dpts,
flann_params,
cfgstr,
use_params_hash=use_params_hash,
use_data_hash=use_data_hash)
if verbose:
print('...flann_cache cfgstr = %r: ' % flann_cfgstr)
# Append any user labels
flann_fname = 'flann_index' + flann_cfgstr + '.flann'
flann_fpath = normpath(join(cache_dir, flann_fname))
return flann_fpath
def test_akmeans(full_test=False,
plot_test=False,
num_pca_dims=2,
data_dim=2,
nump=1000):
import numpy as np
from vtool import clustering
nump = nump
dims = data_dim # 128
dtype = np.uint8
print('Make %d random %d-dimensional %s points.' % (nump, dims, dtype))
# Seed for a determenistic test
np.random.seed(42)
data = np.array(np.random.randint(0, 255, (nump, dims)), dtype=dtype)
num_clusters = 10
max_iters = 2
ave_unchanged_thresh = 0
ave_unchanged_iterwin = 10
flann_params = {}
cache_dir = utool.get_app_resource_dir('vtool', 'test_cache')
utool.ensuredir(cache_dir)
# Test precomputing
dx2_label, centers = clustering.precompute_akmeans(data,
num_clusters,
max_iters=max_iters,
cache_dir=cache_dir)
# internal names
datax2_clusterx, centroids = dx2_label, centers
if plot_test:
clustering.plot_clusters(data,
datax2_clusterx,
centroids,
num_pca_dims=num_pca_dims)
assert centers.shape == (num_clusters, dims), 'sanity check'
assert dx2_label.shape == (nump, ), 'sanity check'
# Test regular computing
if full_test:
dx2_label, centers = clustering.akmeans(data,
num_clusters,
max_iters=max_iters)
assert centers.shape == (num_clusters, dims), 'sanity check'
assert dx2_label.shape == (nump, ), 'sanity check'
if False:
# other test (development)
import pyflann
flann_lib_inst = pyflann.flann
flann_class_inst = pyflann.FLANN()
flann_class_inst.build_index(data)
return locals()
def test_file_hash():
resdir = utool.get_app_resource_dir('utool')
test_fpath = join(resdir, 'lorium_ipsum.txt')
if not utool.checkpath(test_fpath, verbose=True, n=100):
utool.write_to(test_fpath, lorium_text)
hash_ = utool.get_file_hash(test_fpath)
target_hash_ = b'\xd1Y\xe5\xa2\xc1\xd8\xb8\nS\xb1?\x16\xfe\xc5\x88\xbd\x9e\xb4\xe3\xda'
print(repr(hash_))
print(repr(target_hash_))
assert hash_ == target_hash_
def test_file_hash():
resdir = utool.get_app_resource_dir('utool')
test_fpath = join(resdir, 'lorium_ipsum.txt')
if not utool.checkpath(test_fpath, verbose=True, n=100):
utool.write_to(test_fpath, lorium_text)
hash_ = utool.get_file_hash(test_fpath)
target_hash_ = b'\xd1Y\xe5\xa2\xc1\xd8\xb8\nS\xb1?\x16\xfe\xc5\x88\xbd\x9e\xb4\xe3\xda'
print(repr(hash_))
print(repr(target_hash_))
assert hash_ == target_hash_
def render_latex_text(input_text, nest_in_doc=False, appname='utool', verbose=None):
""" testing function """
import utool as ut
if verbose is None:
verbose = ut.VERBOSE
dpath = ut.get_app_resource_dir(appname)
# put a latex framgent in a full document
print(input_text)
pdf_fpath = ut.compile_latex_text(input_text, dpath=dpath, verbose=verbose)
ut.startfile(pdf_fpath)
return pdf_fpath
def ensure_model(model, redownload=False):
try:
url = MODEL_DOMAIN + MODEL_URLS[model]
extracted_fpath = ut.grab_file_url(url, appname='ibeis_cnn',
redownload=redownload,
check_hash=True)
except KeyError as ex:
ut.printex(ex, 'model is not uploaded', iswarning=True)
extracted_fpath = ut.unixjoin(ut.get_app_resource_dir('ibeis_cnn'), model)
ut.assert_exists(extracted_fpath)
return extracted_fpath
def compute_distinctivness(vecs_list, species="zebra_plains"):
"""
hack in distinctivness
"""
from ibeis.algo.hots import distinctiveness_normalizer
cachedir = ut.get_app_resource_dir("ibeis", "distinctiveness_model")
dstcnvs_normer = distinctiveness_normalizer.DistinctivnessNormalizer(species, cachedir=cachedir)
dstcnvs_normer.load(cachedir)
dstncvs_list = [dstcnvs_normer.get_distinctiveness(vecs) for vecs in vecs_list]
return dstncvs_list
def compute_distinctivness(vecs_list, species='zebra_plains'):
"""
hack in distinctivness
"""
from ibeis.algo.hots import distinctiveness_normalizer
cachedir = ut.get_app_resource_dir('ibeis', 'distinctiveness_model')
dstcnvs_normer = distinctiveness_normalizer.DistinctivnessNormalizer(
species, cachedir=cachedir)
dstcnvs_normer.load(cachedir)
dstncvs_list = [
dstcnvs_normer.get_distinctiveness(vecs) for vecs in vecs_list
]
return dstncvs_list
def get_cached_vocabs():
import parse
# Parse some of the training data from fname
parse_str = '{}nC={num_cent},{}_DPTS(({num_dpts},{dim}){}'
smkdir = ut.get_app_resource_dir('smk')
fname_list = ut.glob(smkdir, 'akmeans*')
fpath_list = [join(smkdir, fname) for fname in fname_list]
result_list = [parse.parse(parse_str, fpath) for fpath in fpath_list]
nCent_list = [int(res['num_cent']) for res in result_list]
nDpts_list = [int(res['num_dpts']) for res in result_list]
key_list = zip(nCent_list, nDpts_list)
fpath_sorted = ut.sortedby(fpath_list, key_list, reverse=True)
return fpath_sorted
def get_cached_vocabs():
import parse
# Parse some of the training data from fname
parse_str = '{}nC={num_cent},{}_DPTS(({num_dpts},{dim}){}'
smkdir = ut.get_app_resource_dir('smk')
fname_list = ut.glob(smkdir, 'akmeans*')
fpath_list = [join(smkdir, fname) for fname in fname_list]
result_list = [parse.parse(parse_str, fpath) for fpath in fpath_list]
nCent_list = [int(res['num_cent']) for res in result_list]
nDpts_list = [int(res['num_dpts']) for res in result_list]
key_list = zip(nCent_list, nDpts_list)
fpath_sorted = ut.sortedby(fpath_list, key_list, reverse=True)
return fpath_sorted
def find_tomcat(verbose=ut.NOT_QUIET):
r"""
Searches likely places for tomcat to be installed
Returns:
str: tomcat_dpath
Ignore:
locate --regex "tomcat/webapps$"
CommandLine:
python -m ibeis find_tomcat
Example:
>>> # SCRIPT
>>> from ibeis.control.wildbook_manager import * # NOQA
>>> tomcat_dpath = find_tomcat()
>>> result = ('tomcat_dpath = %s' % (str(tomcat_dpath),))
>>> print(result)
"""
# Tomcat folder must be named one of these and contain specific files
fname_list = ['Tomcat', 'tomcat']
#required_subpaths = ['webapps', 'bin', 'bin/catalina.sh']
required_subpaths = ['webapps']
# Places for local install of tomcat
priority_paths = [
# Number one preference is the CATALINA_HOME directory
os.environ.get('CATALINA_HOME', None),
# We put tomcat here if we can't find it
ut.get_app_resource_dir('ibeis', 'tomcat')
]
if ut.is_developer():
# For my machine to use local catilina
dpath_list = []
else:
# Places for system install of tomcat
if ut.WIN32:
dpath_list = ['C:/Program Files (x86)', 'C:/Program Files']
elif ut.DARWIN:
dpath_list = ['/Library'] # + dpath_list
else:
dpath_list = ['/var/lib', '/usr/share', '/opt', '/lib']
return_path = ut.search_candidate_paths(dpath_list,
fname_list,
priority_paths,
required_subpaths,
verbose=verbose)
tomcat_dpath = return_path
print('tomcat_dpath = %r ' % (tomcat_dpath, ))
return tomcat_dpath
def render_latex_text(input_text,
nest_in_doc=False,
appname='utool',
verbose=None):
""" testing function """
import utool as ut
if verbose is None:
verbose = ut.VERBOSE
dpath = ut.get_app_resource_dir(appname)
# put a latex framgent in a full document
print(input_text)
pdf_fpath = ut.compile_latex_text(input_text, dpath=dpath, verbose=verbose)
ut.startfile(pdf_fpath)
return pdf_fpath
def find_tomcat(verbose=ut.NOT_QUIET):
r"""
Searches likely places for tomcat to be installed
Returns:
str: tomcat_dpath
Ignore:
locate --regex "tomcat/webapps$"
CommandLine:
python -m ibeis find_tomcat
Example:
>>> # SCRIPT
>>> from ibeis.control.wildbook_manager import * # NOQA
>>> tomcat_dpath = find_tomcat()
>>> result = ('tomcat_dpath = %s' % (str(tomcat_dpath),))
>>> print(result)
"""
# Tomcat folder must be named one of these and contain specific files
fname_list = ['Tomcat', 'tomcat']
#required_subpaths = ['webapps', 'bin', 'bin/catalina.sh']
required_subpaths = ['webapps']
# Places for local install of tomcat
priority_paths = [
# Number one preference is the CATALINA_HOME directory
os.environ.get('CATALINA_HOME', None),
# We put tomcat here if we can't find it
ut.get_app_resource_dir('ibeis', 'tomcat')
]
if ut.is_developer():
# For my machine to use local catilina
dpath_list = []
else:
# Places for system install of tomcat
if ut.WIN32:
dpath_list = ['C:/Program Files (x86)', 'C:/Program Files']
elif ut.DARWIN:
dpath_list = ['/Library'] + dpath_list
else:
dpath_list = ['/var/lib', '/usr/share', '/opt', '/lib']
return_path = ut.search_candidate_paths(
dpath_list, fname_list, priority_paths, required_subpaths,
verbose=verbose)
tomcat_dpath = return_path
print('tomcat_dpath = %r ' % (tomcat_dpath,))
return tomcat_dpath
def find_tomcat(verbose=ut.NOT_QUIET):
r"""
Returns:
str: tomcat_dpath
CommandLine:
python -m ibeis.control.manual_wildbook_funcs --test-find_tomcat
python -m ibeis --tf find_tomcat
Example:
>>> # SCRIPT
>>> from ibeis.control.manual_wildbook_funcs import * # NOQA
>>> tomcat_dpath = find_tomcat()
>>> result = ('tomcat_dpath = %s' % (str(tomcat_dpath),))
>>> print(result)
"""
import utool as ut
import os
fname_list = ['Tomcat', 'tomcat']
if ALLOW_SYSTEM_TOMCAT:
# Places for system install of tomcat
if ut.WIN32:
dpath_list = ['C:/Program Files (x86)', 'C:/Program Files']
else:
dpath_list = ['/var/lib', '/usr/share', '/opt', '/lib']
if ut.DARWIN:
dpath_list = ['/Library'] + dpath_list
else:
dpath_list = []
priority_paths = [
# Numberone preference is the CATALINA_HOME directory
os.environ.get('CATALINA_HOME', None),
# We put tomcat here if we can't find it
ut.get_app_resource_dir('ibeis', 'tomcat')
]
required_subpaths = [
'webapps',
'bin',
'bin/catalina.sh',
]
return_path = ut.search_candidate_paths(dpath_list, fname_list,
priority_paths, required_subpaths,
verbose=verbose)
tomcat_dpath = return_path
print('tomcat_dpath = %r ' % (tomcat_dpath,))
return tomcat_dpath
def learn_visual_words(annots_df, taids, nWords, use_cache=True):
"""
Computes visual words
>>> from ibeis.model.hots.smk.smk import * # NOQA
>>> ibs, annots_df, taids, daids, qaids, nWords = testdata()
>>> words = learn_visual_words(annots_df, taids, nWords)
"""
vecs_list = annots_df['vecs'][taids].as_matrix()
train_vecs = np.vstack(vecs_list)
print('Training %d word vocabulary with %d annots and %d descriptors' %
(nWords, len(taids), len(train_vecs)))
cache_dir = utool.get_app_resource_dir('smk')
words = clustertool.cached_akmeans(train_vecs, nWords, max_iters=100,
use_cache=use_cache, cache_dir=cache_dir)
return words
def reset_local_wildbook():
r"""
CommandLine:
python -m ibeis.control.manual_wildbook_funcs --test-reset_local_wildbook
Example:
>>> # SCRIPT
>>> from ibeis.control.manual_wildbook_funcs import * # NOQA
>>> reset_local_wildbook()
"""
import utool as ut
try:
shutdown_wildbook_server()
except ImportError:
pass
ut.delete(ut.unixjoin(ut.get_app_resource_dir('ibeis'), 'tomcat'))
def test_akmeans(full_test=False, plot_test=False, num_pca_dims=2, data_dim=2,
nump=1000):
import numpy as np
from vtool import clustering
nump = nump
dims = data_dim # 128
dtype = np.uint8
print('Make %d random %d-dimensional %s points.' % (nump, dims, dtype))
# Seed for a determenistic test
np.random.seed(42)
data = np.array(np.random.randint(0, 255, (nump, dims)), dtype=dtype)
num_clusters = 10
max_iters = 2
ave_unchanged_thresh = 0
ave_unchanged_iterwin = 10
flann_params = {}
cache_dir = utool.get_app_resource_dir('vtool', 'test_cache')
utool.ensuredir(cache_dir)
# Test precomputing
dx2_label, centers = clustering.precompute_akmeans(data, num_clusters,
max_iters=max_iters,
cache_dir=cache_dir)
# internal names
datax2_clusterx, centroids = dx2_label, centers
if plot_test:
clustering.plot_clusters(data, datax2_clusterx, centroids, num_pca_dims=num_pca_dims)
assert centers.shape == (num_clusters, dims), 'sanity check'
assert dx2_label.shape == (nump,), 'sanity check'
# Test regular computing
if full_test:
dx2_label, centers = clustering.akmeans(data, num_clusters, max_iters=max_iters)
assert centers.shape == (num_clusters, dims), 'sanity check'
assert dx2_label.shape == (nump,), 'sanity check'
if False:
# other test (development)
import pyflann
flann_lib_inst = pyflann.flann
flann_class_inst = pyflann.FLANN()
flann_class_inst.build_index(data)
return locals()
def test_pygist():
print('[pygist] Testing pygist')
# Ensure you have test data
print('[pygist] Ensuring testdata')
datafile = utool.grab_file_url(TEST_MODEL_URL, appname='utool')
test_image_dir = utool.grab_zipped_url(TEST_IMAGES_URL, appname='utool')
imgpaths = utool.list_images(test_image_dir, fullpath=True) # test image paths
outdir = utool.get_app_resource_dir('pygist') # where to put results
# Run pygist on test images
print('[pygist] Running tests')
test_results = pygist.test(imgpaths, outdir=outdir, datafile=datafile)
# Print results
target_results = [-1, -1, 1, -1, 1, -1, -1, -1, 1, 1, -1, 1, 1]
assert target_results == target_results, 'results do not match'
print('test_results = %r' % (test_results,))
print(utool.list_str(list(izip(imgpaths, test_results))))
return locals()
def compute_forgroundness(fpath1, kpts1, species='zebra_plains'):
"""
hack in foregroundness
"""
import pyrf
import vtool as vt
from os.path import exists
# hack for getting a model (not entirely ibeis independent)
trees_path = ut.get_app_resource_dir('ibeis', 'detectmodels', 'rf',
species)
tree_fpath_list = ut.glob(trees_path, '*.txt')
detector = pyrf.Random_Forest_Detector()
# TODO; might need to downsample
forest = detector.forest(tree_fpath_list, verbose=False)
gpath_list = [fpath1]
output_gpath_list = [
gpath + '.' + species + '.probchip.png' for gpath in gpath_list
]
detectkw = {
'scale_list': [1.15, 1.0, 0.85, 0.7, 0.55, 0.4, 0.25, 0.1],
'output_gpath_list': output_gpath_list,
'mode': 1, # mode one outputs probimage
}
results_iter = detector.detect(forest, gpath_list, **detectkw)
results_list = list(results_iter) # NOQA
probchip_list = [
vt.imread(gpath, grayscale=True) if exists(gpath) else None
for gpath in output_gpath_list
]
#vtpatch.get_warped_patches()
fgweights_list = []
kpts_list = [kpts1]
for probchip, kpts in zip(probchip_list, kpts_list):
patch_list = [
vt.get_warped_patch(probchip, kp)[0].astype(np.float32) / 255.0
for kp in kpts
]
weight_list = [
vt.gaussian_average_patch(patch) for patch in patch_list
]
#weight_list = [patch.sum() / (patch.size) for patch in patch_list]
weights = np.array(weight_list, dtype=np.float32)
fgweights_list.append(weights)
fgweights = fgweights_list[0]
detector.free_forest(forest)
return fgweights
def vim_grep_project(pat, hashid=None):
import vim
import utool as ut
ut.ENABLE_COLORS = False
ut.util_str.ENABLE_COLORS = False
if hashid is None:
hashid = ut.hashstr27(pat)
print('Grepping for pattern = %r' % (pat,))
msg_list = ut.grep_projects([pat], verbose=False, colored=False)
fname = 'tmp_grep_' + hashid + '.txt'
dpath = ut.get_app_resource_dir('utool')
fpath = ut.unixjoin(dpath, fname)
#pyvim_funcs.vim_fpath_cmd('split', fpath)
vim_fpath_cmd('new', fpath)
text = '\n'.join(msg_list)
overwrite_text(text)
vim.command(":exec ':w'")
def get_flann_fpath(dpts, cache_dir='default', cfgstr='', flann_params={},
use_params_hash=True, use_data_hash=True, appname='vtool',
verbose=True):
""" returns filepath for flann index """
if cache_dir == 'default':
if verbose:
print('[flann] using default cache dir')
cache_dir = utool.get_app_resource_dir(appname)
utool.ensuredir(cache_dir)
flann_cfgstr = get_flann_cfgstr(dpts, flann_params, cfgstr,
use_params_hash=use_params_hash,
use_data_hash=use_data_hash)
if verbose:
print('...flann_cache cfgstr = %r: ' % flann_cfgstr)
# Append any user labels
flann_fname = 'flann_index' + flann_cfgstr + '.flann'
flann_fpath = normpath(join(cache_dir, flann_fname))
return flann_fpath
def test_pygist():
print('[pygist] Testing pygist')
# Ensure you have test data
print('[pygist] Ensuring testdata')
datafile = utool.grab_file_url(TEST_MODEL_URL, appname='utool')
test_image_dir = utool.grab_zipped_url(TEST_IMAGES_URL, appname='utool')
imgpaths = utool.list_images(test_image_dir,
fullpath=True) # test image paths
outdir = utool.get_app_resource_dir('pygist') # where to put results
# Run pygist on test images
print('[pygist] Running tests')
test_results = pygist.test(imgpaths, outdir=outdir, datafile=datafile)
# Print results
target_results = [-1, -1, 1, -1, 1, -1, -1, -1, 1, 1, -1, 1, 1]
assert target_results == target_results, 'results do not match'
print('test_results = %r' % (test_results, ))
print(utool.list_str(list(izip(imgpaths, test_results))))
return locals()
def learn_visual_words(annots_df, taids, nWords, use_cache=True):
"""
Computes visual words
>>> from ibeis.model.hots.smk.smk import * # NOQA
>>> ibs, annots_df, taids, daids, qaids, nWords = testdata()
>>> words = learn_visual_words(annots_df, taids, nWords)
"""
vecs_list = annots_df['vecs'][taids].as_matrix()
train_vecs = np.vstack(vecs_list)
print('Training %d word vocabulary with %d annots and %d descriptors' %
(nWords, len(taids), len(train_vecs)))
cache_dir = utool.get_app_resource_dir('smk')
words = clustertool.cached_akmeans(train_vecs,
nWords,
max_iters=100,
use_cache=use_cache,
cache_dir=cache_dir)
return words
def index_data_annots(annots_df, daids, words, with_internals=True):
"""
Create inverted index for database annotations
>>> from ibeis.model.hots.smk.smk import * # NOQA
>>> ibs, annots_df, taids, daids, qaids, nWords = testdata()
>>> words = learn_visual_words(annots_df, taids, nWords)
>>> with_internals = True
>>> invindex = index_data_annots(annots_df, daids, words, with_internals)
"""
vecs_list = ensure_values(annots_df['vecs'][daids])
flann_params = {}
cache_dir = utool.get_app_resource_dir('smk')
wordflann = nntool.flann_cache(words, flann_params=flann_params, cache_dir=cache_dir)
_daids = ensure_values(daids)
idx2_dvec, idx2_daid, idx2_dfx = nntool.invertable_stack(vecs_list, _daids)
invindex = InvertedIndex(words, wordflann, idx2_dvec, idx2_daid, idx2_dfx, _daids)
if with_internals:
invindex.compute_internals()
return invindex
def testdata_coverage(fname=None):
""" testing function """
import vtool as vt
# build test data
kpts, vecs = vt.dummy.get_testdata_kpts(fname, with_vecs=True)
# HACK IN DISTINCTIVENESS
if fname is not None:
from ibeis.algo.hots import distinctiveness_normalizer
cachedir = ut.get_app_resource_dir('ibeis', 'distinctiveness_model')
species = 'zebra_plains'
dstcnvs_normer = distinctiveness_normalizer.DistinctivnessNormalizer(species, cachedir=cachedir)
dstcnvs_normer.load(cachedir)
weights = dstcnvs_normer.get_distinctiveness(vecs)
else:
kpts = np.vstack((kpts, [0, 0, 1, 1, 1, 0]))
kpts = np.vstack((kpts, [0.01, 10, 1, 1, 1, 0]))
kpts = np.vstack((kpts, [0.94, 11.5, 1, 1, 1, 0]))
weights = np.ones(len(kpts))
chipsize = tuple(vt.iceil(vt.get_kpts_image_extent(kpts)).tolist())
return kpts, chipsize, weights
def purge_local_wildbook():
r"""
Shuts down the server and then purges the server on disk
CommandLine:
python -m ibeis purge_local_wildbook
python -m ibeis purge_local_wildbook --purge-war
Example:
>>> # SCRIPT
>>> from ibeis.control.wildbook_manager import * # NOQA
>>> purge_local_wildbook()
"""
try:
shutdown_wildbook_server()
except ImportError:
pass
ut.delete(ut.unixjoin(ut.get_app_resource_dir('ibeis'), 'tomcat'))
if ut.get_argflag('--purge-war'):
war_fpath = find_or_download_wilbook_warfile(ensure=False)
ut.delete(war_fpath)
def testdata_coverage(fname=None):
""" testing function """
import vtool as vt
# build test data
kpts, vecs = vt.dummy.get_testdata_kpts(fname, with_vecs=True)
# HACK IN DISTINCTIVENESS
if fname is not None:
from ibeis.algo.hots import distinctiveness_normalizer
cachedir = ut.get_app_resource_dir('ibeis', 'distinctiveness_model')
species = 'zebra_plains'
dstcnvs_normer = distinctiveness_normalizer.DistinctivnessNormalizer(
species, cachedir=cachedir)
dstcnvs_normer.load(cachedir)
weights = dstcnvs_normer.get_distinctiveness(vecs)
else:
kpts = np.vstack((kpts, [0, 0, 1, 1, 1, 0]))
kpts = np.vstack((kpts, [0.01, 10, 1, 1, 1, 0]))
kpts = np.vstack((kpts, [0.94, 11.5, 1, 1, 1, 0]))
weights = np.ones(len(kpts))
chipsize = tuple(vt.iceil(vt.get_kpts_image_extent(kpts)).tolist())
return kpts, chipsize, weights
def purge_local_wildbook():
r"""
Shuts down the server and then purges the server on disk
CommandLine:
python -m ibeis purge_local_wildbook
python -m ibeis purge_local_wildbook --purge-war
Example:
>>> # SCRIPT
>>> from ibeis.control.wildbook_manager import * # NOQA
>>> purge_local_wildbook()
"""
try:
shutdown_wildbook_server()
except ImportError:
pass
ut.delete(ut.unixjoin(ut.get_app_resource_dir('ibeis'), 'tomcat'))
if ut.get_argflag('--purge-war'):
war_fpath = find_or_download_wilbook_warfile(ensure=False)
ut.delete(war_fpath)
def index_data_annots(annots_df, daids, words, with_internals=True):
"""
Create inverted index for database annotations
>>> from ibeis.model.hots.smk.smk import * # NOQA
>>> ibs, annots_df, taids, daids, qaids, nWords = testdata()
>>> words = learn_visual_words(annots_df, taids, nWords)
>>> with_internals = True
>>> invindex = index_data_annots(annots_df, daids, words, with_internals)
"""
vecs_list = ensure_values(annots_df['vecs'][daids])
flann_params = {}
cache_dir = utool.get_app_resource_dir('smk')
wordflann = nntool.flann_cache(words,
flann_params=flann_params,
cache_dir=cache_dir)
_daids = ensure_values(daids)
idx2_dvec, idx2_daid, idx2_dfx = nntool.invertable_stack(vecs_list, _daids)
invindex = InvertedIndex(words, wordflann, idx2_dvec, idx2_daid, idx2_dfx,
_daids)
if with_internals:
invindex.compute_internals()
return invindex
def compute_forgroundness(fpath1, kpts1, species="zebra_plains"):
"""
hack in foregroundness
"""
import pyrf
import vtool as vt
from os.path import exists
# hack for getting a model (not entirely ibeis independent)
trees_path = ut.get_app_resource_dir("ibeis", "detectmodels", "rf", species)
tree_fpath_list = ut.glob(trees_path, "*.txt")
detector = pyrf.Random_Forest_Detector()
# TODO; might need to downsample
forest = detector.forest(tree_fpath_list, verbose=False)
gpath_list = [fpath1]
output_gpath_list = [gpath + "." + species + ".probchip.png" for gpath in gpath_list]
detectkw = {
"scale_list": [1.15, 1.0, 0.85, 0.7, 0.55, 0.4, 0.25, 0.1],
"output_gpath_list": output_gpath_list,
"mode": 1, # mode one outputs probimage
}
results_iter = detector.detect(forest, gpath_list, **detectkw)
results_list = list(results_iter) # NOQA
probchip_list = [vt.imread(gpath, grayscale=True) if exists(gpath) else None for gpath in output_gpath_list]
# vtpatch.get_warped_patches()
fgweights_list = []
kpts_list = [kpts1]
for probchip, kpts in zip(probchip_list, kpts_list):
patch_list = [vt.get_warped_patch(probchip, kp)[0].astype(np.float32) / 255.0 for kp in kpts]
weight_list = [vt.gaussian_average_patch(patch) for patch in patch_list]
# weight_list = [patch.sum() / (patch.size) for patch in patch_list]
weights = np.array(weight_list, dtype=np.float32)
fgweights_list.append(weights)
fgweights = fgweights_list[0]
detector.free_forest(forest)
return fgweights
def get_unofficial_package_hrefs(nocache=None):
"""
Downloads the entire webpage of available hrefs, or returns a cached copy
"""
if nocache is None:
nocache = FORCE
cachedir = ut.get_app_resource_dir('utool')
try:
if nocache:
raise Exception('cachemiss')
all_href_list = ut.load_cache(cachedir, 'win32_hrefs', 'all_href_list')
page_str = ut.load_cache(cachedir, 'win32_hrefs', 'page_str')
print('all_href_list cache hit')
return all_href_list, page_str
except Exception:
print('all_href_list cache miss')
pass
# Read page html
headers = {'User-Agent': 'Mozilla/5.0'}
print('Sending request to %r' % (UNOFFICIAL_WEBURL, ))
req = urllib2.Request(UNOFFICIAL_WEBURL, None, headers)
page = urllib2.urlopen(req)
page_str = page.read()
encrypted_lines = list(
filter(lambda x: x.find('onclick') > -1, page_str.split('\n')))
print('Read %d encrypted lines ' % (len(encrypted_lines, )))
# List of all download links, now choose wisely, because we don't want
# to hack for evil
#line = encrypted_lines[0]
def parse_encrypted(line):
"""
<script type="text/javascript">
// <![CDATA[
if (top.location!=location) top.location.href=location.href;
function dc(ml,mi){
var ot="";
for(var j=0;j<mi.length;j++)
ot+=String.fromCharCode(ml[mi.charCodeAt(j)-48]);
document.write(ot);
}
function dl1(ml,mi){
var ot="";
for(var j=0;j<mi.length;j++)
ot+=String.fromCharCode(ml[mi.charCodeAt(j)-48]);
location.href=ot;
}
function dl(ml,mi){
mi=mi.replace('<','<');
mi=mi.replace('>','>');
mi=mi.replace('&','&');
setTimeout(function(){ dl1(ml,mi) }, 1500);}
// ]]>
</script>
#start = line.find('javascript:dl') + len('javascript:dl') + 2
#end = line.find('title') - 4
#code = line[start: end]
#mid = code.find(']')
#left = code[0:mid]
#right = code[mid + 4:]
#ml = left
#mi = right
"""
_, ml, mi, _ = parse.parse('{}javascript:dl([{}], "{}"){}', line)
mi_ = mi.replace('<', '<').replace('>',
'>').replace('&', '&')
#ml_ = eval('[' + ml + ']')
ml_ = eval(ml)
href_ = ''.join([chr(ml_[ord(michar) - 48]) for michar in mi_])
href = ''.join([UNOFFICIAL_WEBURL, href_])
return href
all_href_list = list(map(parse_encrypted, encrypted_lines))
print('decrypted %d lines' % (len(all_href_list)))
ut.save_cache(cachedir, 'win32_hrefs', 'all_href_list', all_href_list)
ut.save_cache(cachedir, 'win32_hrefs', 'page_str', page_str)
return all_href_list, page_str
from __future__ import absolute_import, division, print_function
import utool
from os.path import exists, join, realpath
(print, print_, printDBG, rrr, profile) = utool.inject(
__name__, '[grabmodels]', DEBUG=False)
#DETECTMODELS_DIR = realpath(join(dirname(__file__), 'rf'))
DETECTMODELS_DIR = utool.get_app_resource_dir('ibeis', 'detectmodels')
MODEL_DIRS = {
'rf': join(DETECTMODELS_DIR, 'rf'),
}
MODEL_URLS = {
'rf': 'https://dl.dropboxusercontent.com/s/9814r3d2rkiq5t3/rf.zip'
}
def assert_models():
for model_dir in MODEL_DIRS.values():
assert exists(model_dir), ('model_dir=%r does not exist' % model_dir)
def ensure_models():
utool.ensuredir(DETECTMODELS_DIR)
for algo, model_dir in MODEL_DIRS.items():
if not exists(model_dir):
download_model(algo, model_dir)
assert_models()
def get_unofficial_package_hrefs(nocache=None):
"""
Downloads the entire webpage of available hrefs, or returns a cached copy
"""
if nocache is None:
nocache = FORCE
cachedir = ut.get_app_resource_dir('utool')
try:
if nocache:
raise Exception('cachemiss')
all_href_list = ut.load_cache(cachedir, 'win32_hrefs', 'all_href_list')
page_str = ut.load_cache(cachedir, 'win32_hrefs', 'page_str')
print('all_href_list cache hit')
return all_href_list, page_str
except Exception:
print('all_href_list cache miss')
pass
# Read page html
headers = { 'User-Agent' : 'Mozilla/5.0' }
print('Sending request to %r' % (UNOFFICIAL_WEBURL,))
req = urllib2.Request(UNOFFICIAL_WEBURL, None, headers)
page = urllib2.urlopen(req)
page_str = page.read()
encrypted_lines = list(filter(lambda x: x.find('onclick') > -1, page_str.split('\n')))
print('Read %d encrypted lines ' % (len(encrypted_lines,)))
# List of all download links, now choose wisely, because we don't want
# to hack for evil
#line = encrypted_lines[0]
def parse_encrypted(line):
"""
<script type="text/javascript">
// <![CDATA[
if (top.location!=location) top.location.href=location.href;
function dc(ml,mi){
var ot="";
for(var j=0;j<mi.length;j++)
ot+=String.fromCharCode(ml[mi.charCodeAt(j)-48]);
document.write(ot);
}
function dl1(ml,mi){
var ot="";
for(var j=0;j<mi.length;j++)
ot+=String.fromCharCode(ml[mi.charCodeAt(j)-48]);
location.href=ot;
}
function dl(ml,mi){
mi=mi.replace('<','<');
mi=mi.replace('>','>');
mi=mi.replace('&','&');
setTimeout(function(){ dl1(ml,mi) }, 1500);}
// ]]>
</script>
#start = line.find('javascript:dl') + len('javascript:dl') + 2
#end = line.find('title') - 4
#code = line[start: end]
#mid = code.find(']')
#left = code[0:mid]
#right = code[mid + 4:]
#ml = left
#mi = right
"""
_, ml, mi, _ = parse.parse('{}javascript:dl([{}], "{}"){}', line)
mi_ = mi.replace('<', '<').replace('>', '>').replace('&', '&')
#ml_ = eval('[' + ml + ']')
ml_ = eval(ml)
href_ = ''.join([chr(ml_[ord(michar) - 48]) for michar in mi_])
href = ''.join([UNOFFICIAL_WEBURL, href_])
return href
all_href_list = list(map(parse_encrypted, encrypted_lines))
print('decrypted %d lines' % (len(all_href_list)))
ut.save_cache(cachedir, 'win32_hrefs', 'all_href_list', all_href_list)
ut.save_cache(cachedir, 'win32_hrefs', 'page_str', page_str)
return all_href_list, page_str
def view_app_files_dir(back):
print('[back] view_model_dir')
utool.view_directory(utool.get_app_resource_dir('ibeis'))
pass
# -*- coding: utf-8 -*-
import logging
import utool as ut
import six
from os.path import exists, join, realpath
(print, rrr, profile) = ut.inject2(__name__, '[grabmodels]')
logger = logging.getLogger('wbia')
# DETECTMODELS_DIR = realpath(join(dirname(__file__), 'rf'))
DEFAULT_DETECTMODELS_DIR = ut.get_app_resource_dir('wbia', 'detectmodels')
DETECTOR_KEY_RF = 'rf'
MODEL_ALGO_SUBDIRS = {
DETECTOR_KEY_RF: 'rf',
}
MODEL_URLS = {
DETECTOR_KEY_RF:
'https://wildbookiarepository.azureedge.net/models/rf.v3.zip',
}
def _expand_modeldir(modeldir='default'):
""" returns default unless another path is specified """
if modeldir == 'default':
modeldir = DEFAULT_DETECTMODELS_DIR
return modeldir
browser = webdriver.Firefox()
fp = browser.firefox_profile
fp.set_preference("browser.helperApps.neverAsk.saveToDisk", "application/exe")
fp.set_preference("browser.helperApps.neverAsk.saveToDisk", "application/exe")
fp.set_preference("browser.download.manager.showWhenStarting", False)
fp.set_preference("browser.helperApps.neverAsk.saveToDisk", "application/binary")
fp.set_preference('browser.download.folderList', 2)
fp.set_preference('browser.download.dir', dldir)
else:
#install32 = normpath(r'C:\Program Files (x86)')
#chromepath = normpath(r'\Google\Chrome\Application')
#chromeexe = join(install32, chromepath, 'chrome.exe')
import utool
DRIVER_URL = 'http://chromedriver.storage.googleapis.com/2.9/chromedriver_win32.zip'
chromedriverexe = utool.get_app_resource_dir('utool') + '/chromedriver.exe'
if not utool.checkpath(chromedriverexe):
utool.grab_zipped_url(DRIVER_URL, appname='utool')
print(type(chromedriverexe))
print(chromedriverexe)
#chromedriverexe = normpath(r'C:\Users\joncrall\local\PATH\chromedriver.exe')
browser = webdriver.Chrome(executable_path=chromedriverexe)
weburl = 'http://www.lfd.uci.edu/~gohlke/pythonlibs'
browser.get(weburl)
source = browser.page_source
def clean_package_names(pkgname_list):
clean_list = []
def delete_detection_models(back):
print('[back] delete_detection_models')
utool.delete(utool.get_app_resource_dir('ibeis', 'detectmodels'))
pass
def delete_global_prefs(back):
print('[back] delete_global_prefs')
# TODO: Add are you sure dialog?
utool.delete(utool.get_app_resource_dir('ibeis', 'global_cache'))
pass