Python QualityControl.load_dstruc示例

示例#1

	def load_dstruc(self):
		if self.debug:
			import pdb
			pdb.set_trace()
		QualityControl.load_dstruc(self)
		from variation.src.FilterStrainSNPMatrix import FilterStrainSNPMatrix
		FilterStrainSNPMatrix_instance = FilterStrainSNPMatrix()
		self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = FilterStrainSNPMatrix_instance.read_data(self.input_fname1)
		self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = FilterStrainSNPMatrix_instance.read_data(self.input_fname2)
	 	
		self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(self.header1, self.header2, self.curs, self.snp_locus_table_250k, self.snp_locus_table_149snp)
		self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(self.strain_acc_list1, self.category_list1, self.strain_acc_list2, self.curs, self.ecotype_duplicate2tg_ecotypeid_table)

示例#2

    def load_dstruc(self):
        if self.debug:
            import pdb
            pdb.set_trace()
        QualityControl.load_dstruc(self)
        from variation.src.FilterStrainSNPMatrix import FilterStrainSNPMatrix
        FilterStrainSNPMatrix_instance = FilterStrainSNPMatrix()
        self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = self.readTina2010In250kSNPs(
            self.input_fname1)
        self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = FilterStrainSNPMatrix_instance.read_data(
            self.input_fname2)

        self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(
            self.header1, self.header2)
        self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(
            self.curs, self.strain_acc_list1, self.strain_acc_list2)

示例#3

文件： Cmp250kVs149SNP.py 项目： bopopescu/gwasmodules

    def load_dstruc(self):
        if self.debug:
            import pdb
            pdb.set_trace()
        QualityControl.load_dstruc(self)
        from variation.src.FilterStrainSNPMatrix import FilterStrainSNPMatrix
        FilterStrainSNPMatrix_instance = FilterStrainSNPMatrix()
        self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = FilterStrainSNPMatrix_instance.read_data(
            self.input_fname1)
        self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = FilterStrainSNPMatrix_instance.read_data(
            self.input_fname2)

        self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(
            self.header1, self.header2, self.curs, self.snp_locus_table_250k,
            self.snp_locus_table_149snp)
        self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(
            self.strain_acc_list1, self.category_list1, self.strain_acc_list2,
            self.curs, self.ecotype_duplicate2tg_ecotypeid_table)

示例#4

    def load_dstruc(self):
        if self.debug:
            import pdb

            pdb.set_trace()
        QualityControl.load_dstruc(self)
        from variation.src.FilterStrainSNPMatrix import FilterStrainSNPMatrix

        FilterStrainSNPMatrix_instance = FilterStrainSNPMatrix()
        self.header1, self.strain_acc_list1, self.category_list1, self.data_matrix1 = self.readTina2010In250kSNPs(
            self.input_fname1
        )
        self.header2, self.strain_acc_list2, self.category_list2, self.data_matrix2 = FilterStrainSNPMatrix_instance.read_data(
            self.input_fname2
        )

        self.col_id2col_index1, self.col_id2col_index2, self.col_id12col_id2 = self.get_col_matching_dstruc(
            self.header1, self.header2
        )
        self.row_id2row_index1, self.row_id2row_index2, self.row_id12row_id2 = self.get_row_matching_dstruc(
            self.curs, self.strain_acc_list1, self.strain_acc_list2
        )