def plotPowNorm(localPowerAllDB):
data=visit.OpenDatabase(localPowerAllDB,0,'Vs')
visit.AddPlot('Pseudocolor','power_SI_Norm')
visit.DrawPlots()
View2DAtts = visit.View2DAttributes()
# View2DAtts.windowCoords = (0, 30, 0, 15.0796)
# View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
# View2DAtts.fullFrameAutoThreshold = 100
View2DAtts.xScale = View2DAtts.LINEAR # LINEAR, LOG
View2DAtts.yScale = View2DAtts.LINEAR # LINEAR, LOG
View2DAtts.windowValid = 1
View2DAtts.fullFrameActivationMode = View2DAtts.On # On, Off, Auto
#View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "ct-z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "z"
AnnotationAtts.axes2D.yAxis.title.units = "m"
# AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
def binPhase(eDB):
visit.OpenDatabase(eDB, 0)
visit.AddPlot("Pseudocolor", "operators/DataBinning/2D/electrons", 1, 1)
DataBinningAtts = visit.DataBinningAttributes()
DataBinningAtts.numDimensions = DataBinningAtts.Two # One, Two, Three
DataBinningAtts.dim1BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim1Var = "electrons_zSI"
DataBinningAtts.dim1SpecifyRange = 1
DataBinningAtts.dim1MinRange = 0
DataBinningAtts.dim1MaxRange = 1.0E-7
DataBinningAtts.dim1NumBins = 100
DataBinningAtts.dim2BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim2Var = "electrons_gamma"
DataBinningAtts.dim2SpecifyRange = 1
DataBinningAtts.dim2MinRange = 0.991
DataBinningAtts.dim2MaxRange = 1.005
DataBinningAtts.dim2NumBins = 100
DataBinningAtts.outOfBoundsBehavior = DataBinningAtts.Clamp # Clamp, Discard
DataBinningAtts.reductionOperator = DataBinningAtts.Sum # Average, Minimum, Maximum, StandardDeviation, Variance, Sum, Count, RMS, PDF
DataBinningAtts.varForReduction = "electrons_chargeSI"
DataBinningAtts.emptyVal = 0
DataBinningAtts.outputType = DataBinningAtts.OutputOnBins # OutputOnBins, OutputOnInputMesh
DataBinningAtts.removeEmptyValFromCurve = 1
visit.SetOperatorOptions(DataBinningAtts, 1)
visit.SetTimeSliderState(0)
visit.SetTimeSliderState(1)
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.centering = PseudocolorAtts.Nodal # Natural, Nodal, Zonal
PseudocolorAtts.opacityType = PseudocolorAtts.Ramp # ColorTable, FullyOpaque, Constant, Ramp, VariableRange
PseudocolorAtts.colorTableName = "hot_desaturated"
visit.SetPlotOptions(PseudocolorAtts)
View2DAtts = visit.View2DAttributes()
View2DAtts.fullFrameActivationMode = View2DAtts.On
# View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "ct-z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "gamma"
AnnotationAtts.axes2D.yAxis.title.units = ""
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
# AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
visit.DrawPlots()
def draw(self):
print "drawing window %d of dimension %d"%(self.i,self.dim)
v.SetActiveWindow(self.i)
v.SetAnnotationAttributes(self.annot)
if self.dim == 2:
# add the slice
assert self._slice is not None
for i,plot in enumerate(self.plots):
sliced = False
for op in plot.operators:
if "slice" == op.oname:
sliced = True
if not sliced:
print "slicing plot %d..."%i
v.SetActivePlots(i)
v.AddOperator("Slice")
sa = self._slice.toAttributes()
v.SetOperatorOptions(sa)
plot.operators.append(Operator("slice", "Slice", sa))
if self.exaggeration is not None:
print "exaggerating..."
self._exaggerateVertical()
# set the plot options
for i, plot in enumerate(self.plots):
print "setting plot options for plot %i..."%i
v.SetActivePlots(i)
v.SetPlotOptions(plot.patts)
# set the view
print "setting the view..."
if self.dim == 2:
v.SetView2D(self.view)
else:
v.SetView3D(self.view)
print "drawing..."
v.DrawPlots()
def SetView2dAttributes(domain, viewport):
# set x- and y-ranges of domain from domain argument (e.g. (0,64,0,64))
# set relative position of plot from viewport (e.g. (0.06,0.94,0.11,0.99))
va = visit.View2DAttributes()
# options I like to set
va.windowCoords = (domain.xlo, domain.xhi, domain.ylo, domain.yhi)
va.viewportCoords = (viewport.xlo, viewport.xhi, viewport.ylo,
viewport.yhi)
# other options with default values
va.fullFrameActivationMode = va.Auto # On, Off, Auto
va.fullFrameAutoThreshold = 100
va.xScale = va.LINEAR # LINEAR, LOG
va.yScale = va.LINEAR # LINEAR, LOG
va.windowValid = 1
visit.SetView2D(va)
def surfIntens(fDB):
visit.OpenDatabase(fDB, 0)
visit.AddPlot("Pseudocolor", "operators/DataBinning/2D/meshScaled", 1, 1)
DataBinningAtts = visit.DataBinningAttributes()
DataBinningAtts.numDimensions = DataBinningAtts.Two # One, Two, Three
DataBinningAtts.dim1BinBasedOn = DataBinningAtts.X # X, Y, Z, Variable
DataBinningAtts.dim1Var = "default"
DataBinningAtts.dim1SpecifyRange = 0
DataBinningAtts.dim1MinRange = 0
DataBinningAtts.dim1MaxRange = 1
DataBinningAtts.dim1NumBins = 85
DataBinningAtts.dim2BinBasedOn = DataBinningAtts.Y # X, Y, Z, Variable
DataBinningAtts.dim2Var = "default"
DataBinningAtts.dim2SpecifyRange = 0
DataBinningAtts.dim2MinRange = 0
DataBinningAtts.dim2MaxRange = 1
DataBinningAtts.dim2NumBins = 85
DataBinningAtts.dim3BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim3Var = "default"
DataBinningAtts.dim3SpecifyRange = 0
DataBinningAtts.dim3MinRange = 0
DataBinningAtts.dim3MaxRange = 1
DataBinningAtts.dim3NumBins = 50
DataBinningAtts.outOfBoundsBehavior = DataBinningAtts.Clamp # Clamp, Discard
DataBinningAtts.reductionOperator = DataBinningAtts.Average # Average, Minimum, Maximum, StandardDeviation, Variance, Sum, Count, RMS, PDF
DataBinningAtts.varForReduction = "intensityScaled"
DataBinningAtts.emptyVal = 0
DataBinningAtts.outputType = DataBinningAtts.OutputOnBins # OutputOnBins, OutputOnInputMesh
DataBinningAtts.removeEmptyValFromCurve = 1
visit.SetOperatorOptions(DataBinningAtts, 1)
View2DAtts = visit.View2DAttributes()
View2DAtts.fullFrameActivationMode = View2DAtts.On
# View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.centering = PseudocolorAtts.Nodal # Natural, Nodal, Zonal
visit.SetPlotOptions(PseudocolorAtts)
visit.DrawPlots()
def visit_plot_pseudocolor_2d(xdmf_path,
name,
value_range=(-5.0, 5.0),
curve2d_paths=None,
config_view=None,
out_dir=os.getcwd(),
out_prefix='wake2d_',
figsize=(1024, 1024),
visit_dir=None,
visit_arch='linux-x86_64',
state=None,
states=None,
states_range=[0, None, 1]):
# Import VisIt package.
if visit_dir is None:
visit_dir = os.environ.get('VISIT_DIR')
if visit_dir is None:
raise ValueError('Provide VisIt installation path or '
'set env variable VISIT_DIR')
sys.path.append(os.path.join(visit_dir, visit_arch, 'lib',
'site-packages'))
import visit
visit.LaunchNowin()
# Check version of VisIt.
visit_check_version(visit.Version())
# Create database correlation with optional Curve2D files.
num_bodies = 0
databases = [str(xdmf_path)]
if curve2d_paths is not None:
num_bodies = len(curve2d_paths)
databases = [str(path) for path in curve2d_paths]
databases.append(str(xdmf_path))
visit.CreateDatabaseCorrelation('common', databases[num_bodies:], 0)
# Open the file with the coordinates of the immersed boundary.
if num_bodies > 0:
for i in range(num_bodies):
visit.OpenDatabase(databases[i], 0)
# Add plot the mesh points.
visit.AddPlot('Curve', 'curve', 1, 1)
# Set attributes of the curve.
CurveAtts = visit.CurveAttributes()
CurveAtts.lineWidth = 1
CurveAtts.curveColorSource = CurveAtts.Custom
CurveAtts.curveColor = (0, 0, 0, 255)
CurveAtts.showLegend = 0
CurveAtts.showLabels = 0
visit.SetPlotOptions(CurveAtts)
# Open the XMF file for the spanwise-averaged z-component of the vorticity.
visit.OpenDatabase(databases[-1], 0)
# Add a pseudocolor plot of the scalar field.
visit.AddPlot('Pseudocolor', name, 1, 1)
# Set attributes of the pseudocolor.
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.minFlag = 1
PseudocolorAtts.min = value_range[0]
PseudocolorAtts.maxFlag = 1
PseudocolorAtts.max = value_range[1]
PseudocolorAtts.colorTableName = 'viridis'
visit.SetPlotOptions(PseudocolorAtts)
# Parse the 2D view configuration file.
if config_view is not None:
with open(str(config_view), 'r') as infile:
config_view = yaml.load(infile, Loader=yaml.FullLoader)
config_view = config_view['View2DAtts']
# Set attributes of the view.
View2DAtts = visit.View2DAttributes()
for key, value in config_view.items():
if type(value) is list:
value = tuple(value)
setattr(View2DAtts, key, value)
visit.SetView2D(View2DAtts)
# Remove time and user info.
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.timeInfoFlag = 1
visit.SetAnnotationAttributes(AnnotationAtts)
visit.SetActiveWindow(1)
visit.Source(os.path.join(visit_dir, visit_arch, 'bin', 'makemovie.py'))
visit.ToggleCameraViewMode()
# Create output directory if necessary.
if not os.path.isdir(str(out_dir)):
os.makedirs(str(out_dir))
# Loop over the states to render and save the plots.
if state is not None:
states = [state]
elif states is None:
if states_range[1] is None:
states_range[1] = visit.TimeSliderGetNStates()
else:
states_range[1] += 1
states = range(*states_range)
for i, state in enumerate(states):
print('[state {}] Rendering and saving figure ...'.format(state))
visit.SetTimeSliderState(state)
if i == 0:
visit.DrawPlots()
RenderingAtts = visit.RenderingAttributes()
visit.SetRenderingAttributes(RenderingAtts)
SaveWindowAtts = visit.SaveWindowAttributes()
SaveWindowAtts.outputToCurrentDirectory = 0
SaveWindowAtts.outputDirectory = str(out_dir)
SaveWindowAtts.fileName = '{}{:0>4}'.format(out_prefix, state)
SaveWindowAtts.family = 0
SaveWindowAtts.format = SaveWindowAtts.PNG
SaveWindowAtts.width = figsize[0]
SaveWindowAtts.height = figsize[1]
SaveWindowAtts.quality = 100
SaveWindowAtts.resConstraint = SaveWindowAtts.NoConstraint
visit.SetSaveWindowAttributes(SaveWindowAtts)
visit.SaveWindow()
os.remove('visitlog.py')
visit.Close()
return
# colorbar range pa = visit.PseudocolorAttributes() pa.minFlag = 1 pa.min = minSk pa.maxFlag = 1 pa.max = maxSk visit.SetPlotOptions(pa) # x- and y-ranges of plot and position of plot va = visit.View2DAttributes() va.windowCoords = (kxlo, kxhi, kylo, kyhi) va.viewportCoords = (0.06, 0.94, 0.11, 0.99) visit.SetView2D(va) # legend(colorbox) and user/database info on/off | axes aa = visit.AnnotationAttributes() aa.legendInfoFlag = 1 aa.userInfoFlag = 0 aa.databaseInfoFlag = 0 aa.axes2D.visible = 1 aa.axes2D.autoSetTicks = 0 aa.axes2D.autoSetScaling = 0 aa.axes2D.lineWidth = 0 aa.axes2D.tickLocation = aa.axes2D.Inside # Inside, Outside, Both aa.axes2D.tickAxes = aa.axes2D.All # Off, Bottom, Left, BottomLeft, All aa.axes2D.xAxis.title.visible = 0 aa.axes2D.xAxis.label.visible = 0
def make_distribution_movie(cellids,
rotated,
inputDirectory,
outputDirectory,
outputFileName,
zoom=1.0,
viewNormal=[0.488281, 0.382966, -0.784167],
minThreshold=1e-18,
maxThreshold=1e37):
'''Makes a distribution movie of some given distribution data
Example usage:
make_distribution_movie(cellids=[18302, 19432, 19042], rotated=True, inputDirectory=\"/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/\", outputDirectory=\"/home/hannukse/MOVIES/\", outputFileName=\"testmovie\", zoom=0.8, viewNormal=[0.488281, 0.382966, -0.784167], minThreshold=1e-17, maxThreshold=1.2e37)
Note: viewNormal determines the angle of view (straight from visit)
'''
if len(viewNormal) != 3:
print "ERROR, INVALID VIEWNORMAL LENGTH, SHOULD BE 3"
return
for cell in sorted(cellids):
# OPTIONS
###########################################################
cellid = str(cell)
#databaseName = "localhost:/home/hannukse/meteo/lustre/tmp/hannuksela/AAM/velgrid.rotated." + cellid + ".*.silo database"
if rotated == True:
rotateFix = "rotated."
else:
rotateFix = ""
inputFileName = "velgrid." + rotateFix + cellid + ".*.silo"
databaseName = "localhost:" + inputDirectory + inputFileName + " database"
outputDir = outputDirectory
fileName = outputFileName + "_" + cellid + "_"
WIDTH = 3000
HEIGHT = 3000
# Threshold values:
# TODO: USE VLSV READER TO AUTOMATE THIS
minimumThreshold = minThreshold
maximumThreshold = maxThreshold
###########################################################
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
#Make a plot
vis.AddPlot("Pseudocolor", "avgs", 1, 1)
vis.SetActivePlots(0)
vis.AddOperator("Threshold", 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("default")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (minimumThreshold)
vis.ThresholdAtts.upperBounds = (maximumThreshold)
vis.ThresholdAtts.defaultVarName = "avgs"
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.DrawPlots()
# Begin spontaneous state
vis.View3DAtts = vis.View3DAttributes()
vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1],
viewNormal[2])
vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841)
vis.View3DAtts.viewAngle = 30
vis.View3DAtts.parallelScale = 1.45614e+06
vis.View3DAtts.nearPlane = -2.91228e+06
vis.View3DAtts.farPlane = 2.91228e+06
vis.View3DAtts.imagePan = (0, 0)
vis.View3DAtts.imageZoom = zoom
vis.View3DAtts.perspective = 1
vis.View3DAtts.eyeAngle = 2
vis.View3DAtts.centerOfRotationSet = 0
vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.axis3DScaleFlag = 0
vis.View3DAtts.axis3DScales = (1, 1, 1)
vis.View3DAtts.shear = (0, 0, 1)
vis.SetView3D(vis.View3DAtts)
# End spontaneous state
vis.ViewCurveAtts = vis.ViewCurveAttributes()
vis.ViewCurveAtts.domainCoords = (0, 1)
vis.ViewCurveAtts.rangeCoords = (0, 1)
vis.ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.ViewCurveAtts.domainScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG
vis.ViewCurveAtts.rangeScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG
vis.SetViewCurve(vis.ViewCurveAtts)
vis.View2DAtts = vis.View2DAttributes()
vis.View2DAtts.windowCoords = (0, 1, 0, 1)
vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto
vis.View2DAtts.fullFrameAutoThreshold = 100
vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.windowValid = 0
vis.SetView2D(vis.View2DAtts)
vis.View3DAtts = vis.View3DAttributes()
vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1],
viewNormal[2])
vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841)
vis.View3DAtts.viewAngle = 30
vis.View3DAtts.parallelScale = 1.45614e+06
vis.View3DAtts.nearPlane = -2.91228e+06
vis.View3DAtts.farPlane = 2.91228e+06
vis.View3DAtts.imagePan = (0, 0)
vis.View3DAtts.imageZoom = zoom
vis.View3DAtts.perspective = 1
vis.View3DAtts.eyeAngle = 2
vis.View3DAtts.centerOfRotationSet = 0
vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.axis3DScaleFlag = 0
vis.View3DAtts.axis3DScales = (1, 1, 1)
vis.View3DAtts.shear = (0, 0, 1)
vis.SetView3D(vis.View3DAtts)
vis.ViewAxisArrayAtts = vis.ViewAxisArrayAttributes()
vis.ViewAxisArrayAtts.domainCoords = (0, 1)
vis.ViewAxisArrayAtts.rangeCoords = (0, 1)
vis.ViewAxisArrayAtts.viewportCoords = (0.15, 0.9, 0.1, 0.85)
vis.SetViewAxisArray(vis.ViewAxisArrayAtts)
for i in range(0, vis.GetDatabaseNStates()):
vis.SetTimeSliderState(i)
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = outputDir
vis.SaveWindowAtts.fileName = fileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = WIDTH
vis.SaveWindowAtts.height = HEIGHT
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
framerate = 5
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
outputDir, fileName, framerate
])
SliceAtts.upAxis = (1, 0, 0)
SliceAtts.project2d = 1
SliceAtts.flip = 1
visit.SetOperatorOptions(SliceAtts, 1)
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.minFlag = 1
PseudocolorAtts.min = 0.
PseudocolorAtts.maxFlag = 1
PseudocolorAtts.max = alpha
visit.SetPlotOptions(PseudocolorAtts)
View2DAtts = visit.View2DAttributes()
View2DAtts.windowCoords = (-0.01, 0.07, 0, 1.58)
View2DAtts.viewportCoords = (0.7, 0.95, 0.1, 0.95)
visit.SetView2D(View2DAtts)
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.autoSetTicks = 0
AnnotationAtts.axes2D.autoSetScaling = 0
AnnotationAtts.axes2D.tickLocation = AnnotationAtts.axes2D.Outside
AnnotationAtts.axes2D.tickAxes = AnnotationAtts.axes2D.BottomLeft
AnnotationAtts.axes2D.xAxis.title.visible = 0
AnnotationAtts.axes2D.xAxis.label.visible = 0
AnnotationAtts.axes2D.xAxis.tickMarks.visible = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.yAxis.title.visible = 0
AnnotationAtts.axes2D.yAxis.label.visible = 1
AnnotationAtts.axes2D.yAxis.tickMarks.visible = 1
AnnotationAtts.axes2D.yAxis.tickMarks.majorMinimum = 0
AnnotationAtts.axes2D.yAxis.tickMarks.majorMaximum = 1.58
def make_moving_frame_of_reference_movie(x_begin,
x_end,
y_begin,
y_end,
speed_x,
speed_y,
variable_name,
minThreshold,
maxThreshold,
input_directory,
input_file_name,
output_directory,
output_file_name,
color_table="hot_desaturated",
start_frame=-1,
end_frame=-1,
frame_skip_dt=1.0):
'''
Function for making a movie with a moving frame of reference.
:param x_begin The starting frame's beginning x-coordinate
:param x_end The starting frame's ending x-coordinate
:param y_begin The starting frame's beginning x-coordinate
:param y_end The starting frame's ending y-coordinate
:param speed_x The speed at which the frame moves in the x direction
:param speed_y The speed at which the frame moves in the y direction
:param variable_name Name of the variable (For ex \"rho\")
:param minThreshold Minimum threshold for the variable
:param maxThreshold Maximum threshold for the variable
:param input_directory The path to the directory where the files are
:param input_file_name Name of the files (For ex \"bulk.*.silo\")
:param output_directory Directory where to output the movie
:param output_file_name Name of the outputted file (For ex \"RHOMOVIE\")
:param color_table Name of the color table (\"hot_desaturated\" by default)
:param start_frame Starting frame for the movie (if -1, equals 0, -1 by default)
:param end_frame Ending frame for the movie (if -1, equals the last frame, -1 by default)
:param frame_skip_dt The number of seconds one skip in frame equals (1.0 by default) (Note: This may change depending on the run and should always be checked)
'''
# OPTIONS
#################################################################
# Input the boundary box for starting coordinates (Starting values)
startX = x_begin # The left x-boundary of the box
endX = x_end # The right x-boundary of the box
startY = y_begin # The bottom y-boundary of the box
endY = y_end # The upper y-boundary of the box
# Input frame properties
startFrame = start_frame # Note: if startFrame is set to -1 the start frame gets set to 0
endFrame = end_frame # Note: if endFrame is set to -1 the endFrame is automatically the number of frames in the database
frameInSeconds = frame_skip_dt # Set how many seconds one frame skip is
# Input speed in x and y direction
speedX = speed_x # Meters per second
speedY = speed_y # Meters per second
# Input variable
variableName = variable_name
minVariableValue = minThreshold
maxVariableValue = maxThreshold
colorTableName = color_table
# Input directory and file names
outputDir = output_directory # Set the output directory (Where .png s are saved)
outputFileName = output_file_name # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, .
databaseName = "localhost:" + input_directory + input_file_name + " database" # For navigating to the silo files
# visitBinDirectory = "/usr/local/visit/bin" #Nevermind this
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
# Launch visit
visitBinDirectory = '/home/htest/visit/bin'
vis.LaunchNowin(vdir=visitBinDirectory)
dx = speedX * frameInSeconds # Note: This is in meters per frame!
dy = speedY * frameInSeconds # Note: This is in meters per frame!
#Set up window and annotations
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", variableName, 1, 1)
vis.SetActivePlots(0)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = color_table
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.SetActivePlots(0)
vis.AddOperator("Slice", 1)
vis.AddOperator("Threshold", 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("Boundary_type")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (1)
vis.ThresholdAtts.upperBounds = (1)
vis.ThresholdAtts.defaultVarName = variableName
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("Boundary_type")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (1)
vis.ThresholdAtts.upperBounds = (1)
vis.ThresholdAtts.defaultVarName = variableName
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.SetActivePlots(0)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
if endFrame == -1:
endFrame = vis.TimeSliderGetNStates() - 1
if startFrame == -1:
startFrame = 0
# Iterate through frames
for i in xrange(startFrame, endFrame + 1):
vis.SetTimeSliderState(i)
frame = i - startFrame
vis.View2DAtts = vis.View2DAttributes()
vis.View2DAtts.windowCoords = (startX + frame * dx, endX + frame * dx,
startY + frame * dy, endY + frame * dy)
vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto
vis.View2DAtts.fullFrameAutoThreshold = 100
vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.windowValid = 1
vis.SetView2D(vis.View2DAtts)
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = outputDir
vis.SaveWindowAtts.fileName = outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 1024
vis.SaveWindowAtts.height = 1024
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
framerate = 7
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
outputDir, outputFileName, framerate
])
def visit_plot_pseudocolor_2d(xdmf_path,
name,
value_range=(-5.0, 5.0),
curve2d_paths=None,
config_view=None,
out_dir=os.getcwd(),
out_prefix=None,
figsize=(1024, 1024),
state=None,
states=None,
states_range=[0, None, 1]):
visit_initialize()
# Create database correlation with optional Curve2D files.
num_bodies = 0
databases = [str(xdmf_path)]
if curve2d_paths is not None:
num_bodies = len(curve2d_paths)
databases = [str(path) for path in curve2d_paths]
databases.append(str(xdmf_path))
visit.CreateDatabaseCorrelation('common', databases[num_bodies:], 0)
# Open the file with the coordinates of the immersed boundary.
if num_bodies > 0:
for i in range(num_bodies):
visit.OpenDatabase(databases[i], 0)
# Add plot the mesh points.
visit.AddPlot('Curve', 'curve', 1, 1)
# Set attributes of the curve.
CurveAtts = visit.CurveAttributes()
CurveAtts.lineWidth = 1
CurveAtts.curveColorSource = CurveAtts.Custom
CurveAtts.curveColor = (0, 0, 0, 255)
CurveAtts.showLegend = 0
CurveAtts.showLabels = 0
visit.SetPlotOptions(CurveAtts)
# Open the XMF file for the spanwise-averaged z-component of the vorticity.
visit.OpenDatabase(databases[-1], 0)
# Add a pseudocolor plot of the scalar field.
visit.AddPlot('Pseudocolor', name, 1, 1)
# Set attributes of the pseudocolor.
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.minFlag = 1
PseudocolorAtts.min = value_range[0]
PseudocolorAtts.maxFlag = 1
PseudocolorAtts.max = value_range[1]
PseudocolorAtts.colorTableName = 'viridis'
visit.SetPlotOptions(PseudocolorAtts)
# Parse the 2D view configuration file.
if config_view is not None:
View2DAtts = visit_get_view(config_view, '2D')
visit.SetView2D(View2DAtts)
# Remove time and user info.
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.timeInfoFlag = 1
visit.SetAnnotationAttributes(AnnotationAtts)
visit.SetActiveWindow(1)
states = visit_get_states(state=state,
states=states,
states_range=states_range)
if out_prefix is None:
out_prefix = name + '_'
visit_render_save_states(states,
out_dir=out_dir,
out_prefix=out_prefix,
figsize=figsize)
visit_finalize()
return
import sys
# visit
sys.path.append("/home/neo/visit/2.11.0/linux-x86_64/lib/site-packages")
import visit as vs
vs.Launch()
vs.OpenDatabase("visit-data/noise.silo")
vs.AddPlot("Pseudocolor", "hgslice")
vs.AddPlot("Mesh", "Mesh2D")
vs.AddPlot("Label", "hgslice")
vs.DrawPlots()
print "The current view is:", vs.GetView2D()
# Get an initialized 2D view object.
v = vs.GetView2D()
v.windowCoords = (-7.67964, -3.21856, 2.66766, 7.87724)
vs.SetView2D(v)
d = input('Press anything to quit')