def translateVistrail(_vistrail):
def update_key(old_obj, translate_dict):
return '__notes__'
def update_annotation(old_obj, translate_dict):
new_dict = {'DBAnnotation': {'key': update_key}}
new_list = []
for annotation in old_obj.db_annotations:
if annotation.db_key == 'notes':
new_list.append(DBAnnotation.update_version(annotation,
new_dict))
else:
new_list.append(DBAnnotation.update_version(annotation,
{}))
return new_list
def update_session(old_obj, translate_dict):
if not old_obj.db_session:
session = None
else:
session = long(old_obj.db_session)
return session
def update_workflow(old_obj, translate_dict):
return DBWorkflow.update_version(old_obj.db_workflow, translate_dict)
translate_dict = {'DBAction': {'annotations': update_annotation,
'session': update_session},
'DBGroup': {'workflow': update_workflow}}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = '0.9.3'
return vistrail
def translateVistrail(_vistrail):
def update_key(old_obj, translate_dict):
return '__notes__'
def update_annotation(old_obj, translate_dict):
new_dict = {'DBAnnotation': {'key': update_key}}
new_list = []
for annotation in old_obj.db_annotations:
if annotation.db_key == 'notes':
new_list.append(DBAnnotation.update_version(annotation,
new_dict))
else:
new_list.append(DBAnnotation.update_version(annotation,
{}))
return new_list
def update_session(old_obj, translate_dict):
if not old_obj.db_session:
session = None
else:
session = long(old_obj.db_session)
return session
def update_workflow(old_obj, translate_dict):
return DBWorkflow.update_version(old_obj.db_workflow, translate_dict)
translate_dict = {'DBAction': {'annotations': update_annotation,
'session': update_session},
'DBGroup': {'workflow': update_workflow}}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = '0.9.3'
return vistrail
def translateVistrail(_vistrail):
def update_key(old_obj, translate_dict):
return "__notes__"
def update_annotation(old_obj, translate_dict):
new_dict = {"DBAnnotation": {"key": update_key}}
new_list = []
for annotation in old_obj.db_annotations:
if annotation.db_key == "notes":
new_list.append(DBAnnotation.update_version(annotation, new_dict))
else:
new_list.append(DBAnnotation.update_version(annotation, {}))
return new_list
def update_session(old_obj, translate_dict):
if not old_obj.db_session:
session = None
else:
session = long(old_obj.db_session)
return session
def update_workflow(old_obj, translate_dict):
return DBWorkflow.update_version(old_obj.db_workflow, translate_dict)
translate_dict = {
"DBAction": {"annotations": update_annotation, "session": update_session},
"DBGroup": {"workflow": update_workflow},
}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = "0.9.3"
return vistrail
def translateVistrail(_vistrail):
vistrail = DBVistrail()
for _action in _vistrail.db_actions:
ops = []
for op in _action.db_operations:
if op.vtType == 'add':
data = convert_data(op.db_data)
ops.append(
DBAdd(id=op.db_id,
what=op.db_what,
objectId=op.db_objectId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType,
data=data))
elif op.vtType == 'change':
data = convert_data(op.db_data)
ops.append(
DBChange(id=op.db_id,
what=op.db_what,
oldObjId=op.db_oldObjId,
newObjId=op.db_newObjId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType,
data=data))
elif op.vtType == 'delete':
ops.append(
DBDelete(id=op.db_id,
what=op.db_what,
objectId=op.db_objectId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType))
annotations = []
for annotation in _action.db_annotations:
annotations.append(
DBAnnotation(id=annotation.db_id,
key=annotation.db_key,
value=annotation.db_value))
session = _action.db_session
if not session:
session = None
else:
session = long(_action.db_session)
action = DBAction(id=_action.db_id,
prevId=_action.db_prevId,
date=_action.db_date,
user=_action.db_user,
prune=_action.db_prune,
session=session,
operations=ops,
annotations=annotations)
vistrail.db_add_action(action)
for _tag in _vistrail.db_tags:
tag = DBTag(id=_tag.db_id, name=_tag.db_name)
vistrail.db_add_tag(tag)
vistrail.db_version = '0.9.3'
return vistrail
def translateVistrail(_vistrail):
def update_operations(old_obj, trans_dict):
def update_abstraction(old_obj, trans_dict):
def get_version(old_obj, trans_dict):
return long(old_obj.db_internal_version)
new_dict = {'DBAbstractionRef': {'version': get_version}}
new_dict.update(trans_dict)
return DBAbstractionRef.update_version(old_obj.db_data, new_dict)
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'add':
if obj.db_what == 'abstraction':
trans_dict['DBAdd'] = {'data': update_abstraction}
new_op = DBAdd.update_version(obj, trans_dict)
new_op.db_what = 'abstractionRef'
new_ops.append(new_op)
del trans_dict['DBAdd']
else:
new_op = DBAdd.update_version(obj, trans_dict)
if obj.db_parentObjType == 'abstraction':
new_op.db_parentObjType = 'abstractionRef'
new_ops.append(new_op)
elif obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'change':
if obj.db_what == 'abstraction':
trans_dict['DBChange'] = {'data': update_abstraction}
new_op = DBChange.update_version(obj, trans_dict)
new_op.db_what = 'abstractionRef'
new_ops.append(new_op)
del trans_dict['DBChange']
else:
new_op = DBChange.update_version(obj, trans_dict)
if obj.db_parentObjType == 'abstraction':
new_op.db_parentObjType = 'abstractionRef'
new_ops.append(new_op)
return new_ops
translate_dict = {
'DBGroup': {
'workflow': update_workflow
},
'DBAction': {
'operations': update_operations
},
'DBWorkflow': {
'modules': update_modules
}
}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = '0.9.3'
return vistrail
def translateVistrail(_vistrail):
vistrail = DBVistrail()
for _action in _vistrail.db_actions:
ops = []
for op in _action.db_operations:
if op.vtType == 'add':
data = convert_data(op.db_data)
ops.append(DBAdd(id=op.db_id,
what=op.db_what,
objectId=op.db_objectId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType,
data=data))
elif op.vtType == 'change':
data = convert_data(op.db_data)
ops.append(DBChange(id=op.db_id,
what=op.db_what,
oldObjId=op.db_oldObjId,
newObjId=op.db_newObjId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType,
data=data))
elif op.vtType == 'delete':
ops.append(DBDelete(id=op.db_id,
what=op.db_what,
objectId=op.db_objectId,
parentObjId=op.db_parentObjId,
parentObjType=op.db_parentObjType))
annotations = []
for annotation in _action.db_annotations:
annotations.append(DBAnnotation(id=annotation.db_id,
key=annotation.db_key,
value=annotation.db_value))
session = _action.db_session
if not session:
session = None
else:
session = long(_action.db_session)
action = DBAction(id=_action.db_id,
prevId=_action.db_prevId,
date=_action.db_date,
user=_action.db_user,
prune=_action.db_prune,
session=session,
operations=ops,
annotations=annotations)
vistrail.db_add_action(action)
for _tag in _vistrail.db_tags:
tag = DBTag(id=_tag.db_id,
name=_tag.db_name)
vistrail.db_add_tag(tag)
vistrail.db_version = '0.9.3'
return vistrail
def translateVistrail(_vistrail):
def update_operations(old_obj, trans_dict):
def update_abstraction(old_obj, trans_dict):
def get_version(old_obj, trans_dict):
return long(old_obj.db_internal_version)
new_dict = {"DBAbstractionRef": {"version": get_version}}
new_dict.update(trans_dict)
return DBAbstractionRef.update_version(old_obj.db_data, new_dict)
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == "add":
if obj.db_what == "abstraction":
trans_dict["DBAdd"] = {"data": update_abstraction}
new_op = DBAdd.update_version(obj, trans_dict)
new_op.db_what = "abstractionRef"
new_ops.append(new_op)
del trans_dict["DBAdd"]
else:
new_op = DBAdd.update_version(obj, trans_dict)
if obj.db_parentObjType == "abstraction":
new_op.db_parentObjType = "abstractionRef"
new_ops.append(new_op)
elif obj.vtType == "delete":
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == "change":
if obj.db_what == "abstraction":
trans_dict["DBChange"] = {"data": update_abstraction}
new_op = DBChange.update_version(obj, trans_dict)
new_op.db_what = "abstractionRef"
new_ops.append(new_op)
del trans_dict["DBChange"]
else:
new_op = DBChange.update_version(obj, trans_dict)
if obj.db_parentObjType == "abstraction":
new_op.db_parentObjType = "abstractionRef"
new_ops.append(new_op)
return new_ops
translate_dict = {
"DBGroup": {"workflow": update_workflow},
"DBAction": {"operations": update_operations},
"DBWorkflow": {"modules": update_modules},
}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = "0.9.3"
return vistrail
def translateVistrail(_vistrail):
def update_operations(old_obj, trans_dict):
def update_abstraction(old_obj, trans_dict):
def get_version(old_obj, trans_dict):
return long(old_obj.db_internal_version)
new_dict = {'DBAbstractionRef': {'version': get_version}}
new_dict.update(trans_dict)
return DBAbstractionRef.update_version(old_obj.db_data, new_dict)
new_ops = []
for obj in old_obj.db_operations:
if obj.vtType == 'add':
if obj.db_what == 'abstraction':
trans_dict['DBAdd'] = {'data': update_abstraction}
new_op = DBAdd.update_version(obj, trans_dict)
new_op.db_what = 'abstractionRef'
new_ops.append(new_op)
del trans_dict['DBAdd']
else:
new_op = DBAdd.update_version(obj, trans_dict)
if obj.db_parentObjType == 'abstraction':
new_op.db_parentObjType = 'abstractionRef'
new_ops.append(new_op)
elif obj.vtType == 'delete':
new_ops.append(DBDelete.update_version(obj, trans_dict))
elif obj.vtType == 'change':
if obj.db_what == 'abstraction':
trans_dict['DBChange'] = {'data': update_abstraction}
new_op = DBChange.update_version(obj, trans_dict)
new_op.db_what = 'abstractionRef'
new_ops.append(new_op)
del trans_dict['DBChange']
else:
new_op = DBChange.update_version(obj, trans_dict)
if obj.db_parentObjType == 'abstraction':
new_op.db_parentObjType = 'abstractionRef'
new_ops.append(new_op)
return new_ops
translate_dict = {'DBGroup': {'workflow': update_workflow},
'DBAction': {'operations': update_operations},
'DBWorkflow': {'modules': update_modules}}
# pass DBVistrail because domain contains enriched version of the auto_gen
vistrail = DBVistrail.update_version(_vistrail, translate_dict)
vistrail.db_version = '0.9.3'
return vistrail