def schema(cls, data):
return named_tuple_helper(
cls, {
voluptuous.Optional('mode'): voluptuous.In({"SkipGram"}),
'files': voluptuous.IsDir(),
}, data
)
def schema(cls, data):
return named_tuple_helper(
cls, {
'input_dir':
voluptuous.All(
voluptuous.validators.Length(min=1),
[voluptuous.Any(voluptuous.IsDir(), voluptuous.IsFile())],
),
'model':
voluptuous.validators.IsFile(),
}, data)
def add_args(parser: argparse.ArgumentParser):
parser.add_argument("eval.sam_path", nargs="+")
parser.add_argument("-r",
"--reference",
dest="eval.reference",
type=voluptuous.IsFile(),
required=True)
parser.add_argument("-w",
"--work-dir",
dest="eval.work_dir",
type=voluptuous.IsDir(),
default=".")
parser.add_argument(
"--calc_consensus",
dest="eval.calc_consensus",
action="store_true",
default=None,
)
parser.set_defaults(func=run_args)
vol.Coerce(str),
CONF_LATITUDE:
cv.latitude,
CONF_LONGITUDE:
cv.longitude,
CONF_ELEVATION:
vol.Coerce(int),
vol.Optional(CONF_TEMPERATURE_UNIT):
cv.temperature_unit,
CONF_UNIT_SYSTEM:
cv.unit_system,
CONF_TIME_ZONE:
cv.time_zone,
vol.Optional(CONF_WHITELIST_EXTERNAL_DIRS):
# pylint: disable=no-value-for-parameter
vol.All(cv.ensure_list, [vol.IsDir()]),
vol.Optional(CONF_PACKAGES, default={}):
PACKAGES_CONFIG_SCHEMA,
vol.Optional(CONF_AUTH_PROVIDERS):
vol.All(cv.ensure_list, [
auth_providers.AUTH_PROVIDER_SCHEMA.extend({
CONF_TYPE:
vol.NotIn(['insecure_example'],
'The insecure_example auth provider'
' is for testing only.')
})
], _no_duplicate_auth_provider),
vol.Optional(CONF_AUTH_MFA_MODULES):
vol.All(cv.ensure_list, [
auth_mfa_modules.MULTI_FACTOR_AUTH_MODULE_SCHEMA.extend({
CONF_TYPE:
CONF_ELEVATION:
vol.Coerce(int),
vol.Optional(CONF_TEMPERATURE_UNIT):
cv.temperature_unit,
CONF_UNIT_SYSTEM:
cv.unit_system,
CONF_TIME_ZONE:
cv.time_zone,
vol.Optional(CONF_INTERNAL_URL):
cv.url,
vol.Optional(CONF_EXTERNAL_URL):
cv.url,
vol.Optional(CONF_ALLOWLIST_EXTERNAL_DIRS):
vol.All(
cv.ensure_list,
[vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(LEGACY_CONF_WHITELIST_EXTERNAL_DIRS):
vol.All(
cv.ensure_list,
[vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(CONF_ALLOWLIST_EXTERNAL_URLS):
vol.All(cv.ensure_list, [cv.url]),
vol.Optional(CONF_PACKAGES, default={}):
PACKAGES_CONFIG_SCHEMA,
vol.Optional(CONF_AUTH_PROVIDERS):
vol.All(
cv.ensure_list,
[
auth_providers.AUTH_PROVIDER_SCHEMA.extend({
vol.Required("well_y"): vol.Coerce(int),
vol.Required("plate_name"): vol.Coerce(str),
"images": [vol.Coerce(str)],
}
)
CONFIG_SCHEMA = vol.Schema(
{
vol.Required(CONF_CHANNELS): [
{
vol.Required(CONF_CHANNEL): vol.Coerce(str),
vol.Required(CONF_INIT_GAIN): [vol.Coerce(int)],
}
],
# pylint: disable=no-value-for-parameter
vol.Optional(CONF_SAVE_DIR): vol.IsDir(),
}
)
GAIN = "gain"
Data = namedtuple("Data", [BOX, GAIN, VALID]) # pylint: disable=invalid-name
Channel = namedtuple("Channel", ["name", GAIN]) # pylint: disable=invalid-name
async def setup_module(center, config):
"""Set up gain calculation plugin."""
async def handle_calc_gain(**kwargs):
"""Handle call to calc_gain action."""
well_x = kwargs["well_x"]
well_y = kwargs["well_y"]
CONF_ELEVATION:
vol.Coerce(int),
vol.Optional(CONF_TEMPERATURE_UNIT):
cv.temperature_unit,
CONF_UNIT_SYSTEM:
cv.unit_system,
CONF_TIME_ZONE:
cv.time_zone,
vol.Optional(CONF_INTERNAL_URL):
cv.url,
vol.Optional(CONF_EXTERNAL_URL):
cv.url,
vol.Optional(CONF_WHITELIST_EXTERNAL_DIRS):
vol.All(
cv.ensure_list,
[vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(CONF_PACKAGES, default={}):
PACKAGES_CONFIG_SCHEMA,
vol.Optional(CONF_AUTH_PROVIDERS):
vol.All(
cv.ensure_list,
[
auth_providers.AUTH_PROVIDER_SCHEMA.extend({
CONF_TYPE:
vol.NotIn(
["insecure_example"],
"The insecure_example auth provider"
" is for testing only.",
)
})
}
)
CORE_CONFIG_SCHEMA = CUSTOMIZE_CONFIG_SCHEMA.extend(
{
CONF_NAME: vol.Coerce(str),
CONF_LATITUDE: cv.latitude,
CONF_LONGITUDE: cv.longitude,
CONF_ELEVATION: vol.Coerce(int),
vol.Optional(CONF_TEMPERATURE_UNIT): cv.temperature_unit,
CONF_UNIT_SYSTEM: cv.unit_system,
CONF_TIME_ZONE: cv.time_zone,
vol.Optional(CONF_INTERNAL_URL): cv.url,
vol.Optional(CONF_EXTERNAL_URL): cv.url,
vol.Optional(CONF_ALLOWLIST_EXTERNAL_DIRS): vol.All(
cv.ensure_list, [vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(LEGACY_CONF_WHITELIST_EXTERNAL_DIRS): vol.All(
cv.ensure_list, [vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(CONF_ALLOWLIST_EXTERNAL_URLS): vol.All(cv.ensure_list, [cv.url]),
vol.Optional(CONF_PACKAGES, default={}): PACKAGES_CONFIG_SCHEMA,
vol.Optional(CONF_AUTH_PROVIDERS): vol.All(
cv.ensure_list,
[
auth_providers.AUTH_PROVIDER_SCHEMA.extend(
{
CONF_TYPE: vol.NotIn(
["insecure_example"],
"The insecure_example auth provider"
" is for testing only.",
}
)
CORE_CONFIG_SCHEMA = CUSTOMIZE_CONFIG_SCHEMA.extend(
{
CONF_NAME: vol.Coerce(str),
CONF_LATITUDE: cv.latitude,
CONF_LONGITUDE: cv.longitude,
CONF_ELEVATION: vol.Coerce(int),
vol.Optional(CONF_TEMPERATURE_UNIT): cv.temperature_unit,
CONF_UNIT_SYSTEM: cv.unit_system,
CONF_TIME_ZONE: cv.time_zone,
vol.Optional(CONF_INTERNAL_URL): cv.url,
vol.Optional(CONF_EXTERNAL_URL): cv.url,
vol.Optional(CONF_WHITELIST_EXTERNAL_DIRS): vol.All(
cv.ensure_list, [vol.IsDir()] # pylint: disable=no-value-for-parameter
),
vol.Optional(CONF_PACKAGES, default={}): PACKAGES_CONFIG_SCHEMA,
vol.Optional(CONF_AUTH_PROVIDERS): vol.All(
cv.ensure_list,
[
auth_providers.AUTH_PROVIDER_SCHEMA.extend(
{
CONF_TYPE: vol.NotIn(
["insecure_example"],
"The insecure_example auth provider"
" is for testing only.",
)
}
)
],
LEICA_START_COMMAND_EVENT = "leica_start_command_event"
LEICA_STOP_COMMAND_EVENT = "leica_stop_command_event"
LEICA_IMAGE_EVENT = "leica_image_event"
REL_IMAGE_PATH = "relpath"
SCAN_FINISHED = "scanfinished"
SCAN_STARTED = "scanstart"
START_STOP_DELAY = 2.0
CONFIG_SCHEMA = vol.Schema(
vol.All(
ensure_dict,
{
vol.Optional(CONF_HOST, default="localhost"): vol.Coerce(str),
vol.Optional(CONF_PORT, default=8895): vol.Coerce(int),
# pylint: disable=no-value-for-parameter
vol.Optional(CONF_IMAGING_DIR, default=tempfile.gettempdir()): vol.IsDir(),
},
)
)
async def setup_module(center, config):
"""Set up Leica api package.
Parameters
----------
center : Center instance
The Center instance.
config : dict
The config dict.
"""
