def test_tally_nonalphabetic(self): s = Seq("AGTCAGCTACGACGCGC", dna_alphabet) c = s.tally(Alphabet("AC")) self.assertEqual(2, len(c)) self.assertEqual(list(c), [4, 6])
def test_tally(self): s = Seq("AGTCAGCTACGACGCGC", unambiguous_dna_alphabet) c = s.tally() self.assertEqual(len(unambiguous_dna_alphabet), len(c)) self.assertEqual(list(c), [4, 6, 5, 2])