def test_build_addon_root_has_correct_upload_limits(self):
self.node_settings.config.max_file_size = 10
self.node_settings.config.high_max_file_size = 20
node = self.project
user = self.project.creator
auth = Auth(user)
permissions = {
'view': node.can_view(auth),
'edit': node.can_edit(auth) and not node.is_registration,
}
result = rubeus.build_addon_root(
self.node_settings,
self.node_settings.bucket,
permissions=permissions,
user=user
)
assert_equal(result['accept']['maxSize'], self.node_settings.config.max_file_size)
# user now has elevated upload limit
user.system_tags.append('high_upload_limit')
user.save()
result = rubeus.build_addon_root(
self.node_settings,
self.node_settings.bucket,
permissions=permissions,
user=user
)
assert_equal(
result['accept']['maxSize'],
self.node_settings.config.high_max_file_size
)
def test_build_addon_root_has_correct_upload_limits(self):
self.node_settings.config.max_file_size = 10
self.node_settings.config.high_max_file_size = 20
node = self.project
user = self.project.creator
auth = Auth(user)
permissions = {
'view': node.can_view(auth),
'edit': node.can_edit(auth) and not node.is_registration,
}
result = rubeus.build_addon_root(self.node_settings,
self.node_settings.bucket,
permissions=permissions,
user=user)
assert_equal(result['accept']['maxSize'],
self.node_settings.config.max_file_size)
# user now has elevated upload limit
user.add_system_tag('high_upload_limit')
user.save()
result = rubeus.build_addon_root(self.node_settings,
self.node_settings.bucket,
permissions=permissions,
user=user)
assert_equal(result['accept']['maxSize'],
self.node_settings.config.high_max_file_size)
def dataverse_hgrid_root(node_addon, auth, **kwargs):
node = node_addon.owner
user_settings = node_addon.user_settings
default_version = 'latest-published'
version = 'latest-published' if not node.can_edit(auth) else default_version
# Quit if no dataset linked
if not node_addon.complete:
return []
can_edit = node.can_edit(auth)
permissions = {
'edit': can_edit and not node.is_registration,
'view': node.can_view(auth)
}
try:
connection = connect_from_settings(user_settings)
dataverse = get_dataverse(connection, node_addon.dataverse_alias)
dataset = get_dataset(dataverse, node_addon.dataset_doi)
except SSLError:
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
permissions=permissions
)]
# Quit if doi does not produce a dataset
if dataset is None:
return []
published_files = get_files(dataset, published=True)
# Produce draft version or quit if no published version is available
if not published_files:
if can_edit:
version = 'latest'
else:
return []
urls = {
'publish': node.api_url_for('dataverse_publish_dataset'),
'publishBoth': node.api_url_for('dataverse_publish_both')
}
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
urls=urls,
permissions=permissions,
dataset=node_addon.dataset,
doi=dataset.doi,
dataverse=dataverse.title,
hasPublishedFiles=bool(published_files),
dataverseIsPublished=dataverse.is_published,
version=version,
)]
def test_hgrid_dummy_overrides(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
expected = {
"isPointer": False,
"provider": "s3",
"addonFullname": node_settings.config.full_name,
"iconUrl": node_settings.config.icon_url,
"name": "Amazon S3: {0}".format(node_settings.bucket),
"kind": "folder",
"permissions": {"view": node.can_view(user), "edit": node.can_edit(user) and not node.is_registration},
"urls": {},
"accept": {
"maxSize": node_settings.config.max_file_size,
"acceptedFiles": node_settings.config.accept_extensions,
},
"isAddonRoot": True,
"extra": None,
"buttons": None,
"nodeId": node._id,
"nodeUrl": node.url,
"nodeApiUrl": node.api_url,
}
permissions = {"view": node.can_view(user), "edit": node.can_edit(user) and not node.is_registration}
assert_equal(
rubeus.build_addon_root(node_settings, node_settings.bucket, permissions=permissions, urls={}), expected
)
def test_hgrid_dummy_fail(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
rv = {
'isPointer': False,
'addon': 's3',
'addonFullname': node_settings.config.full_name,
'iconUrl': node_settings.config.icon_url,
'name': 'Amazon Simple Storage Service: {0}'.format(
node_settings.bucket
),
'kind': 'folder',
'permissions': {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
},
'urls': {
'fetch': node.api_url + 's3/hgrid/',
'upload': node.api_url + 's3/upload/'
},
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot': True,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
assert_not_equals(rubeus.build_addon_root(
node_settings, node_settings.bucket, permissions=permissions), rv)
def bitbucket_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = BitbucketClient(access_token=node_settings.external_account.oauth_key)
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
repo = connection.repo(node_settings.user, node_settings.repo)
if not repo:
# TODO: Add warning message
logger.error('Could not access Bitbucket repo')
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except (NotFoundError, Exception):
# TODO: Show an alert or change Bitbucket configuration?
logger.error('Bitbucket repo not found')
return
ref = None if branch is None else ref_to_params(branch, sha)
name_tpl = '{user}/{repo}'.format(
user=node_settings.user, repo=node_settings.repo
)
permissions = {
'edit': False,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload': None,
'fetch': node_settings.owner.api_url + 'bitbucket/hgrid/' + (ref or ''),
'branch': node_settings.owner.api_url + 'bitbucket/hgrid/root/',
'zip': node_settings.owner.api_url + 'bitbucket/zipball/' + (ref or ''),
'repo': 'https://bitbucket.com/{0}/{1}/branch/'.format(node_settings.user, node_settings.repo)
}
branch_names = [each['name'] for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
branches=branch_names,
defaultBranch=branch,
private_key=kwargs.get('view_only', None),
)]
def gitlab_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitLabClient(external_account=node_settings.external_account)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public or node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.repo_id)
except NotFoundError:
logger.error('Could not access GitLab repo')
return None
try:
branch, sha, branches = get_refs(node_settings, branch=kwargs.get('branch'), sha=kwargs.get('sha'), connection=connection)
except (NotFoundError, GitLabError):
logger.error('GitLab repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(node_settings, auth, connection, branch, sha, repo=repo)
else:
ref = ''
can_edit = False
permissions = {
'edit': can_edit,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload': node_settings.owner.api_url + 'gitlab/file/' + ref,
'fetch': node_settings.owner.api_url + 'gitlab/hgrid/' + ref,
'branch': node_settings.owner.api_url + 'gitlab/hgrid/root/' + ref,
'zip': 'https://{0}/{1}/repository/archive.zip?branch={2}'.format(node_settings.external_account.oauth_secret, repo.path_with_namespace, ref),
'repo': 'https://{0}/{1}/tree/{2}'.format(node_settings.external_account.oauth_secret, repo.path_with_namespace, ref)
}
branch_names = [each.name for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [rubeus.build_addon_root(
node_settings,
repo.path_with_namespace,
urls=urls,
permissions=permissions,
branches=branch_names,
private_key=kwargs.get('view_only', None),
default_branch=repo.default_branch,
)]
def figshare_hgrid_data(node_settings, auth, parent=None, **kwargs):
node = node_settings.owner
if node_settings.figshare_type == 'project':
item = Figshare.from_settings(node_settings.user_settings).project(
node_settings, node_settings.figshare_id)
else:
item = Figshare.from_settings(node_settings.user_settings).article(
node_settings, node_settings.figshare_id)
if not node_settings.figshare_id or not node_settings.has_auth or not item:
return
#TODO Test me
#Throw error if neither
node_settings.figshare_title = item.get(
'title') or item['items'][0]['title']
node_settings.save()
return [
rubeus.build_addon_root(
node_settings,
u'{0}:{1}'.format(node_settings.figshare_title or 'Unnamed',
node_settings.figshare_id),
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
]
def gitlab_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitLabClient(external_account=node_settings.external_account)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public or node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.repo_id)
except NotFoundError:
logger.error('Could not access GitLab repo')
return None
try:
branch, sha, branches = get_refs(node_settings, branch=kwargs.get('branch'), sha=kwargs.get('sha'), connection=connection)
except (NotFoundError, GitLabError):
logger.error('GitLab repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(node_settings, auth, connection, branch, sha, repo=repo)
else:
ref = ''
can_edit = False
permissions = {
'edit': can_edit,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload': node_settings.owner.api_url + 'gitlab/file/' + ref,
'fetch': node_settings.owner.api_url + 'gitlab/hgrid/' + ref,
'branch': node_settings.owner.api_url + 'gitlab/hgrid/root/' + ref,
'zip': 'https://{0}/{1}/repository/archive.zip?branch={2}'.format(node_settings.external_account.oauth_secret, repo['path_with_namespace'], ref),
'repo': 'https://{0}/{1}/tree/{2}'.format(node_settings.external_account.oauth_secret, repo['path_with_namespace'], ref)
}
branch_names = [each['name'] for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [rubeus.build_addon_root(
node_settings,
repo['path_with_namespace'],
urls=urls,
permissions=permissions,
branches=branch_names,
private_key=kwargs.get('view_only', None),
default_branch=repo['default_branch'],
)]
def test_hgrid_dummy(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
# FIXME: These tests are very brittle.
expected = {
"isPointer": False,
"provider": "s3",
"addonFullname": node_settings.config.full_name,
"iconUrl": node_settings.config.icon_url,
"name": "Amazon S3: {0}".format(node_settings.bucket),
"kind": "folder",
"accept": {
"maxSize": node_settings.config.max_file_size,
"acceptedFiles": node_settings.config.accept_extensions,
},
"isAddonRoot": True,
"extra": None,
"buttons": None,
"nodeId": node._id,
"nodeUrl": node.url,
"nodeApiUrl": node.api_url,
}
permissions = {"view": node.can_view(user), "edit": node.can_edit(user) and not node.is_registration}
expected["permissions"] = permissions
actual = rubeus.build_addon_root(node_settings, node_settings.bucket, permissions=permissions)
assert actual["urls"]["fetch"]
assert actual["urls"]["upload"]
del actual["urls"]
assert_equals(actual, expected)
def s3_hgrid_data(node_settings, auth, **kwargs):
# Dont display if not properly configured
if not node_settings.complete:
return
node = node_settings.owner
return [
rubeus.build_addon_root(
node_settings, node_settings.bucket, permissions=auth,
nodeUrl=node.url, nodeApiUrl=node.api_url,
)
]
def s3_hgrid_data(node_settings, auth, **kwargs):
# Quit if no bucket
if not node_settings.bucket or not node_settings.user_settings or not node_settings.user_settings.has_auth:
return
node = node_settings.owner
return [
rubeus.build_addon_root(
node_settings, node_settings.bucket, permissions=auth,
nodeUrl=node.url, nodeApiUrl=node.api_url,
)
]
def test_hgrid_dummy(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
# FIXME: These tests are very brittle.
expected = {
'isPointer':
False,
'provider':
's3',
'addonFullname':
node_settings.config.full_name,
'iconUrl':
node_settings.config.icon_url,
'name':
'Amazon Simple Storage Service: {0}'.format(node_settings.bucket),
'kind':
'folder',
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot':
True,
'extra':
None,
'buttons':
None,
'nodeId':
node._id,
'nodeUrl':
node.url,
'nodeApiUrl':
node.api_url,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
expected['permissions'] = permissions
actual = rubeus.build_addon_root(node_settings,
node_settings.bucket,
permissions=permissions)
assert actual['urls']['fetch']
assert actual['urls']['upload']
del actual['urls']
assert_equals(actual, expected)
def test_hgrid_dummy_node_urls(self):
node_settings = self.node_settings
user = Auth(self.project.creator)
node = self.project
expected = {
'isPointer':
False,
'provider':
's3',
'addonFullname':
node_settings.config.full_name,
'iconUrl':
node_settings.config.icon_url,
'name':
'Amazon Simple Storage Service: {0}'.format(node_settings.bucket),
'kind':
'folder',
'permissions': {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
},
'urls': {
'fetch': node.api_url_for('s3_hgrid_data_contents'),
'upload': node.api_url_for('s3_upload'),
},
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot':
True,
'extra':
None,
'buttons':
None,
'nodeId':
node._id,
'nodeUrl':
node.url,
'nodeApiUrl':
node.api_url,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
assert_equals(
rubeus.build_addon_root(node_settings,
node_settings.bucket,
permissions=permissions), expected)
def test_build_addon_root_for_anonymous_vols_shows_path(self):
private_link = PrivateLinkFactory()
private_link.nodes.add(self.project)
private_link.save()
project_viewer = UserFactory()
result = rubeus.build_addon_root(self.node_settings,
self.node_settings.bucket,
user=project_viewer,
private_key=private_link.key)
assert result['name'] == 'Amazon S3: {0}'.format(
self.node_settings.bucket)
def osf_storage_root(addon_config, node_settings, auth, **kwargs):
"""Build HGrid JSON for root node. Note: include node URLs for client-side
URL creation for uploaded files.
"""
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name='',
permissions=auth,
user=auth.user,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def osf_storage_root(addon_config, node_settings, auth, **kwargs):
"""Build HGrid JSON for root node. Note: include node URLs for client-side
URL creation for uploaded files.
"""
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name='',
permissions=auth,
user=auth.user,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def _root_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only."""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder_id:
return None
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.fetch_folder_name(),
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def test_build_addon_root_for_anonymous_vols_hides_path(self):
private_anonymous_link = PrivateLinkFactory(anonymous=True)
private_anonymous_link.nodes.add(self.project)
private_anonymous_link.save()
project_viewer = UserFactory()
result = rubeus.build_addon_root(
self.node_settings,
self.node_settings.bucket,
user=project_viewer,
private_key=private_anonymous_link.key
)
assert result['name'] == 'Amazon S3'
def googledrive_addon_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only."""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder_id:
return None
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.folder_name,
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def test_osf_storage_root(self):
auth = Auth(self.project.creator)
result = views.osf_storage_root(self.node_settings, auth=auth)
node = self.project
expected = rubeus.build_addon_root(
node_settings=self.node_settings,
name='',
permissions=auth,
user=auth.user,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
root = result[0]
assert_equal(root, expected)
def s3_hgrid_data(node_settings, auth, **kwargs):
# Dont display if not properly configured
if not node_settings.complete:
return
node = node_settings.owner
return [
rubeus.build_addon_root(
node_settings,
node_settings.bucket,
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
]
def _root_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only."""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder_id:
return None
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.fetch_folder_name(),
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
private_key=kwargs.get('view_only', None),
)
return [root]
def s3_hgrid_data(node_settings, auth, **kwargs):
# Quit if no bucket
if not node_settings.bucket or not node_settings.user_settings or not node_settings.user_settings.has_auth:
return
node = node_settings.owner
return [
rubeus.build_addon_root(
node_settings,
node_settings.bucket,
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
]
def osf_storage_root(node_settings, auth, **kwargs):
"""Build HGrid JSON for root node. Note: include node URLs for client-side
URL creation for uploaded files.
"""
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name='',
permissions=auth,
urls={
'upload': node.api_url_for('osf_storage_request_upload_url'),
'fetch': node.api_url_for('osf_storage_hgrid_contents'),
},
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def osf_storage_root(node_settings, auth, **kwargs):
"""Build HGrid JSON for root node. Note: include node URLs for client-side
URL creation for uploaded files.
"""
node = node_settings.owner
root = rubeus.build_addon_root(
node_settings=node_settings,
name='',
permissions=auth,
urls={
'upload': node.api_url_for('osf_storage_request_upload_url'),
'fetch': node.api_url_for('osf_storage_hgrid_contents'),
},
nodeUrl=node.url,
nodeApiUrl=node.api_url,
)
return [root]
def figshare_hgrid_data(node_settings, auth, parent=None, **kwargs):
node = node_settings.owner
if node_settings.figshare_type == 'project':
item = Figshare.from_settings(node_settings.user_settings).project(node_settings, node_settings.figshare_id)
else:
item = Figshare.from_settings(node_settings.user_settings).article(node_settings, node_settings.figshare_id)
if not node_settings.figshare_id or not node_settings.has_auth or not item:
return
#TODO Test me
#Throw error if neither
node_settings.figshare_title = item.get('title') or item['items'][0]['title']
node_settings.save()
return [
rubeus.build_addon_root(
node_settings, u'{0}:{1}'.format(node_settings.figshare_title or 'Unnamed', node_settings.figshare_id), permissions=auth,
nodeUrl=node.url, nodeApiUrl=node.api_url,
)
]
def test_hgrid_dummy_overrides(self):
node_settings = self.node_settings
node_settings.config.urls = None
node = self.project
user = Auth(self.project.creator)
rv = {
'isPointer':
False,
'addon':
's3',
'addonFullname':
node_settings.config.full_name,
'iconUrl':
node_settings.config.icon_url,
'name':
'Amazon Simple Storage Service: {0}'.format(node_settings.bucket),
'kind':
'folder',
'permissions': {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
},
'urls': {},
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot':
True,
'extra':
None,
'buttons':
None,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
assert_equals(
rubeus.build_addon_root(node_settings,
node_settings.bucket,
permissions=permissions,
urls={}), rv)
def figshare_root_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only.
Identical to the generic_views.root_folder except adds root_folder_type
to exported data. Fangorn needs root_folder_type to decide whether to
display the 'Create Folder' button.
"""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder_id:
return None
node = node_settings.owner
return [rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.fetch_folder_name(),
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
rootFolderType=node_settings.folder_path,
private_key=kwargs.get('view_only', None),
)]
def figshare_root_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only.
Identical to the generic_views.root_folder except adds root_folder_type
to exported data. Fangorn needs root_folder_type to decide whether to
display the 'Create Folder' button.
"""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder_id:
return None
node = node_settings.owner
return [rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.fetch_folder_name(),
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
rootFolderType=node_settings.folder_path,
private_key=kwargs.get('view_only', None),
)]
def dropbox_addon_folder(node_settings, auth, **kwargs):
"""Return the Rubeus/HGrid-formatted response for the root folder only."""
# Quit if node settings does not have authentication
if not node_settings.has_auth or not node_settings.folder:
return None
node = node_settings.owner
path = clean_path(node_settings.folder)
root = rubeus.build_addon_root(
node_settings=node_settings,
name=node_settings.folder,
permissions=auth,
nodeUrl=node.url,
nodeApiUrl=node.api_url,
urls={
'upload': node.api_url_for('dropbox_upload',
path=path),
'fetch': node.api_url_for('dropbox_hgrid_data_contents',
path=path)
}
)
return [root]
def test_hgrid_dummy(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
# FIXME: These tests are very brittle.
expected = {
'isPointer': False,
'provider': 's3',
'addonFullname': node_settings.config.full_name,
'iconUrl': node_settings.config.icon_url,
'name': 'Amazon S3: {0}'.format(
node_settings.bucket
),
'kind': 'folder',
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot': True,
'extra': None,
'buttons': None,
'nodeId': node._id,
'nodeUrl': node.url,
'nodeApiUrl': node.api_url,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
expected['permissions'] = permissions
actual = rubeus.build_addon_root(node_settings, node_settings.bucket, permissions=permissions)
assert actual['urls']['fetch']
assert actual['urls']['upload']
del actual['urls']
assert_equals(actual, expected)
def test_hgrid_dummy_overrides(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
expected = {
'isPointer': False,
'provider': 's3',
'addonFullname': node_settings.config.full_name,
'iconUrl': node_settings.config.icon_url,
'name': 'Amazon S3: {0}'.format(
node_settings.bucket
),
'kind': 'folder',
'permissions': {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
},
'urls': {},
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot': True,
'extra': None,
'buttons': None,
'nodeId': node._id,
'nodeUrl': node.url,
'nodeApiUrl': node.api_url,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
assert_equal(
rubeus.build_addon_root(
node_settings, node_settings.bucket,
permissions=permissions, urls={}
),
expected
)
def _weko_root_folder(node_addon, auth, **kwargs):
# Quit if no indices linked
if not node_addon.complete:
return []
connection = client.connect_from_settings(weko_settings, node_addon)
index = client.get_index_by_id(connection, node_addon.index_id)
if index is None:
return []
return [
rubeus.build_addon_root(
node_addon,
node_addon.index_title,
permissions={
'view': True,
'edit': True
},
private_key=kwargs.get('view_only', None),
)
]
def test_hgrid_dummy_fail(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
rv = {
"isPointer": False,
"addon": "s3",
"addonFullname": node_settings.config.full_name,
"iconUrl": node_settings.config.icon_url,
"name": "Amazon S3: {0}".format(node_settings.bucket),
"kind": "folder",
"permissions": {"view": node.can_view(user), "edit": node.can_edit(user) and not node.is_registration},
"urls": {"fetch": node.api_url + "s3/hgrid/", "upload": node.api_url + "s3/upload/"},
"accept": {
"maxSize": node_settings.config.max_file_size,
"acceptedFiles": node_settings.config.accept_extensions,
},
"isAddonRoot": True,
"nodeId": node._id,
"nodeUrl": node.url,
"nodeApiUrl": node.api_url,
}
permissions = {"view": node.can_view(user), "edit": node.can_edit(user) and not node.is_registration}
assert_not_equals(rubeus.build_addon_root(node_settings, node_settings.bucket, permissions=permissions), rv)
def test_hgrid_dummy_fail(self):
node_settings = self.node_settings
node = self.project
user = Auth(self.project.creator)
rv = {
'isPointer': False,
'addon': 's3',
'addonFullname': node_settings.config.full_name,
'iconUrl': node_settings.config.icon_url,
'name': 'Amazon S3: {0}'.format(node_settings.bucket),
'kind': 'folder',
'permissions': {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
},
'urls': {
'fetch': node.api_url + 's3/hgrid/',
'upload': node.api_url + 's3/upload/'
},
'accept': {
'maxSize': node_settings.config.max_file_size,
'acceptedFiles': node_settings.config.accept_extensions
},
'isAddonRoot': True,
'nodeId': node._id,
'nodeUrl': node.url,
'nodeApiUrl': node.api_url,
}
permissions = {
'view': node.can_view(user),
'edit': node.can_edit(user) and not node.is_registration,
}
assert_not_equals(
rubeus.build_addon_root(node_settings,
node_settings.bucket,
permissions=permissions), rv)
def bitbucket_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = BitbucketClient(
access_token=node_settings.external_account.oauth_key)
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
repo = connection.repo(node_settings.user, node_settings.repo)
if not repo:
# TODO: Add warning message
logger.error('Could not access Bitbucket repo')
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except (NotFoundError, Exception):
# TODO: Show an alert or change Bitbucket configuration?
logger.error('Bitbucket repo not found')
return
ref = None if branch is None else ref_to_params(branch, sha)
name_tpl = '{user}/{repo}'.format(user=node_settings.user,
repo=node_settings.repo)
permissions = {
'edit': False,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload':
None,
'fetch':
node_settings.owner.api_url + 'bitbucket/hgrid/' + (ref or ''),
'branch':
node_settings.owner.api_url + 'bitbucket/hgrid/root/',
'zip':
node_settings.owner.api_url + 'bitbucket/zipball/' + (ref or ''),
'repo':
'https://bitbucket.com/{0}/{1}/branch/'.format(node_settings.user,
node_settings.repo)
}
branch_names = [each['name'] for each in branches]
if not branch_names:
branch_names = [
branch
] # if repo un-init-ed then still add default branch to list of branches
return [
rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
branches=branch_names,
defaultBranch=branch,
private_key=kwargs.get('view_only', None),
)
]
def dataverse_hgrid_root(node_addon, auth, state=None, **kwargs):
node = node_addon.owner
user_settings = node_addon.user_settings
default_state = 'released'
state = 'released' if not node.can_edit(auth) else state or default_state
connection = connect_from_settings(user_settings)
# Quit if no study linked
if node_addon.study_hdl is None or connection is None:
return []
dataverse = get_dataverse(connection, node_addon.dataverse_alias)
study = get_study(dataverse, node_addon.study_hdl)
# Quit if hdl does not produce a study
if study is None:
return []
released_files = get_files(study, released=True)
authorized = node.can_edit(auth)
# Produce draft version or quit if no released version is available
if not released_files:
if authorized:
state = 'draft'
else:
return []
study_name = node_addon.study
if len(study_name) > 23:
study_name = u'{0}...'.format(study_name[:20])
permissions = {
'edit': node.can_edit(auth) and not node.is_registration,
'view': node.can_view(auth)
}
urls = {
'upload': node.api_url_for('dataverse_upload_file'),
'fetch': node.api_url_for('dataverse_hgrid_data_contents', state=state),
'state': node.api_url_for('dataverse_root_folder_public'),
'release': node.api_url_for('dataverse_release_study'),
}
buttons = [rubeus.build_addon_button(
'<i class="fa fa-globe"></i> Release Study',
'releaseStudy')] if state == 'draft' else None
return [rubeus.build_addon_root(
node_addon,
study_name,
urls=urls,
permissions=permissions,
buttons=buttons,
study=study_name,
doi=study.doi,
dataverse=dataverse.title,
citation=study.citation,
hasReleasedFiles=bool(released_files),
state=state,
)]
def github_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitHub.from_settings(node_settings.user_settings)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.user, node_settings.repo)
except NotFoundError:
# TODO: Test me @jmcarp
# TODO: Add warning message
logger.error('Could not access GitHub repo')
return None
if repo.private:
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except NotFoundError:
# TODO: Show an alert or change GitHub configuration?
logger.error('GitHub repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(
node_settings, auth, connection, branch, sha, repo=repo,
)
name_append = github_branch_widget(branches, owner=node_settings.user,
repo=node_settings.repo, branch=branch, sha=sha)
else:
ref = None
can_edit = False
name_append = None
name_tpl = '{user}/{repo}'.format(
user=node_settings.user, repo=node_settings.repo
)
permissions = {
'edit': can_edit,
'view': True
}
urls = {
'upload': node_settings.owner.api_url + 'github/file/' + (ref or ''),
'fetch': node_settings.owner.api_url + 'github/hgrid/' + (ref or ''),
'branch': node_settings.owner.api_url + 'github/hgrid/root/',
'zip': node_settings.owner.api_url + 'github/zipball/' + (ref or ''),
'repo': github_repo_url(owner=node_settings.user, repo=node_settings.repo, branch=branch)
}
buttons = [
rubeus.build_addon_button('<i class="icon-download-alt"></i>', 'githubDownloadZip', "Download Zip"),
rubeus.build_addon_button('<i class="icon-external-link"></i>', 'githubVisitRepo', "Visit Repository"),
]
return [rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
extra=name_append,
buttons=buttons,
)]
def github_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitHubClient(external_account=node_settings.external_account)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.user, node_settings.repo)
except NotFoundError:
# TODO: Test me @jmcarp
# TODO: Add warning message
logger.error('Could not access GitHub repo')
return None
if repo.private:
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except (NotFoundError, GitHubError):
# TODO: Show an alert or change GitHub configuration?
logger.error('GitHub repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(
node_settings, auth, connection, branch, sha, repo=repo,
)
else:
ref = None
can_edit = False
name_tpl = '{user}/{repo}'.format(
user=node_settings.user, repo=node_settings.repo
)
permissions = {
'edit': can_edit,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload': node_settings.owner.api_url + 'github/file/' + (ref or ''),
'fetch': node_settings.owner.api_url + 'github/hgrid/' + (ref or ''),
'branch': node_settings.owner.api_url + 'github/hgrid/root/',
'zip': node_settings.owner.api_url + 'github/zipball/' + (ref or ''),
'repo': "https://github.com/{0}/{1}/tree/{2}".format(node_settings.user, node_settings.repo, branch)
}
branch_names = [each.name for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
branches=branch_names,
defaultBranch=branch,
)]
def dataverse_hgrid_root(node_addon, auth, state=None, **kwargs):
node = node_addon.owner
user_settings = node_addon.user_settings
default_state = 'released'
state = 'released' if not node.can_edit(auth) else state or default_state
connection = connect_from_settings(user_settings)
# Quit if no study linked
if node_addon.study_hdl is None or connection is None:
return []
dataverse = get_dataverse(connection, node_addon.dataverse_alias)
study = get_study(dataverse, node_addon.study_hdl)
# Quit if hdl does not produce a study
if study is None:
return []
released_files = get_files(study, released=True)
authorized = node.can_edit(auth)
# Produce draft version or quit if no released version is available
if not released_files:
if authorized:
state = 'draft'
else:
return []
study_name = node_addon.study
if len(study_name) > 23:
study_name = u'{0}...'.format(study_name[:20])
permissions = {
'edit': node.can_edit(auth) and not node.is_registration,
'view': node.can_view(auth)
}
urls = {
'upload': node.api_url_for('dataverse_upload_file'),
'fetch': node.api_url_for('dataverse_hgrid_data_contents',
state=state),
'state': node.api_url_for('dataverse_root_folder_public'),
'release': node.api_url_for('dataverse_release_study'),
}
buttons = [
rubeus.build_addon_button('<i class="fa fa-globe"></i> Release Study',
'releaseStudy')
] if state == 'draft' else None
return [
rubeus.build_addon_root(
node_addon,
study_name,
urls=urls,
permissions=permissions,
buttons=buttons,
study=study_name,
doi=study.doi,
dataverse=dataverse.title,
citation=study.citation,
hasReleasedFiles=bool(released_files),
state=state,
)
]
def _dataverse_root_folder(node_addon, auth, **kwargs):
node = node_addon.owner
default_version = 'latest-published'
version = 'latest-published' if not node.can_edit(auth) else default_version
# Quit if no dataset linked
if not node_addon.complete:
return []
can_edit = node.can_edit(auth)
permissions = {
'edit': can_edit and not node.is_registration,
'view': node.can_view(auth)
}
try:
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, node_addon.dataverse_alias)
dataset = client.get_dataset(dataverse, node_addon.dataset_doi)
except SSLError:
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
permissions=permissions,
private_key=kwargs.get('view_only', None),
)]
# Quit if doi does not produce a dataset
if dataset is None:
return []
published_files = client.get_files(dataset, published=True)
# Produce draft version or quit if no published version is available
if not published_files:
if can_edit:
version = 'latest'
else:
return []
urls = {
'publish': node.api_url_for('dataverse_publish_dataset'),
}
# determine if there are any changes between the published and draft
# versions of the dataset
try:
dataset.get_metadata('latest-published')
dataset_is_published = True
dataset_draft_modified = dataset.get_state() == 'DRAFT'
except VersionJsonNotFoundError:
dataset_is_published = False
dataset_draft_modified = True
# Get the dataverse host
# (stored in oauth_key because dataverse doesn't use that)
dataverse_host = node_addon.external_account.oauth_key
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
urls=urls,
permissions=permissions,
dataset=node_addon.dataset,
doi=dataset.doi,
dataverse=dataverse.title,
hasPublishedFiles=bool(published_files),
dataverseIsPublished=dataverse.is_published,
datasetIsPublished=dataset_is_published,
datasetDraftModified=dataset_draft_modified,
version=version,
host=dataverse_host,
private_key=kwargs.get('view_only', None),
)]
def _dataverse_root_folder(node_addon, auth, **kwargs):
node = node_addon.owner
default_version = 'latest-published'
version = 'latest-published' if not node.can_edit(auth) else default_version
# Quit if no dataset linked
if not node_addon.complete:
return []
can_edit = node.can_edit(auth)
permissions = {
'edit': can_edit and not node.is_registration,
'view': node.can_view(auth)
}
try:
connection = client.connect_from_settings(node_addon)
dataverse = client.get_dataverse(connection, node_addon.dataverse_alias)
dataset = client.get_dataset(dataverse, node_addon.dataset_doi)
except SSLError:
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
permissions=permissions,
private_key=kwargs.get('view_only', None),
)]
# Quit if doi does not produce a dataset
if dataset is None:
return []
published_files = client.get_files(dataset, published=True)
# Produce draft version or quit if no published version is available
if not published_files:
if can_edit:
version = 'latest'
else:
return []
urls = {
'publish': node.api_url_for('dataverse_publish_dataset'),
}
# determine if there are any changes between the published and draft
# versions of the dataset
try:
dataset.get_metadata('latest-published')
dataset_is_published = True
dataset_draft_modified = dataset.get_state() == 'DRAFT'
except VersionJsonNotFoundError:
dataset_is_published = False
dataset_draft_modified = True
# Get the dataverse host
# (stored in oauth_key because dataverse doesn't use that)
dataverse_host = node_addon.external_account.oauth_key
try:
host_custom_publish_text = client.get_custom_publish_text(connection)
except OperationFailedError:
host_custom_publish_text = ''
return [rubeus.build_addon_root(
node_addon,
node_addon.dataset,
urls=urls,
permissions=permissions,
dataset=node_addon.dataset,
doi=dataset.doi,
dataverse=dataverse.title,
hasPublishedFiles=bool(published_files),
dataverseIsPublished=dataverse.is_published,
datasetIsPublished=dataset_is_published,
datasetDraftModified=dataset_draft_modified,
version=version,
host=dataverse_host,
hostCustomPublishText=host_custom_publish_text,
private_key=kwargs.get('view_only', None),
)]
def github_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitHub.from_settings(node_settings.user_settings)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.user, node_settings.repo)
except NotFoundError:
# TODO: Test me @jmcarp
# TODO: Add warning message
logger.error('Could not access GitHub repo')
return None
if repo.private:
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except NotFoundError:
# TODO: Show an alert or change GitHub configuration?
logger.error('GitHub repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(
node_settings,
auth,
connection,
branch,
sha,
repo=repo,
)
else:
ref = None
can_edit = False
name_tpl = '{user}/{repo}'.format(user=node_settings.user,
repo=node_settings.repo)
permissions = {'edit': can_edit, 'view': True}
urls = {
'upload':
node_settings.owner.api_url + 'github/file/' + (ref or ''),
'fetch':
node_settings.owner.api_url + 'github/hgrid/' + (ref or ''),
'branch':
node_settings.owner.api_url + 'github/hgrid/root/',
'zip':
node_settings.owner.api_url + 'github/zipball/' + (ref or ''),
'repo':
github_repo_url(owner=node_settings.user,
repo=node_settings.repo,
branch=branch)
}
return [
rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
branches=[each.name for each in branches],
defaultBranch=branch,
)
]
def github_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitHubClient(external_account=node_settings.external_account)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.user, node_settings.repo)
except NotFoundError:
logger.error('Could not access GitHub repo')
return None
except GitHubError:
return
if repo.private:
return None
try:
branch, sha, branches = get_refs(
node_settings,
branch=kwargs.get('branch'),
sha=kwargs.get('sha'),
connection=connection,
)
except (NotFoundError, GitHubError):
# TODO: Show an alert or change GitHub configuration?
logger.error('GitHub repo not found')
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(
node_settings, auth, connection, branch, sha, repo=repo,
)
else:
ref = None
can_edit = False
name_tpl = '{user}/{repo}'.format(
user=node_settings.user, repo=node_settings.repo
)
permissions = {
'edit': can_edit,
'view': True,
'private': node_settings.is_private
}
urls = {
'upload': node_settings.owner.api_url + 'github/file/' + (ref or ''),
'fetch': node_settings.owner.api_url + 'github/hgrid/' + (ref or ''),
'branch': node_settings.owner.api_url + 'github/hgrid/root/',
'zip': node_settings.owner.api_url + 'github/zipball/' + (ref or ''),
'repo': 'https://github.com/{0}/{1}/tree/{2}'.format(node_settings.user, node_settings.repo, branch)
}
branch_names = [each.name for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [rubeus.build_addon_root(
node_settings,
name_tpl,
urls=urls,
permissions=permissions,
branches=branch_names,
defaultBranch=branch,
private_key=kwargs.get('view_only', None),
)]
def github_hgrid_data(node_settings, auth, **kwargs):
# Quit if no repo linked
if not node_settings.complete:
return
connection = GitHub.from_settings(node_settings.user_settings)
# Initialize repo here in the event that it is set in the privacy check
# below. This potentially saves an API call in _check_permissions, below.
repo = None
# Quit if privacy mismatch and not contributor
node = node_settings.owner
if node.is_public and not node.is_contributor(auth.user):
try:
repo = connection.repo(node_settings.user, node_settings.repo)
except NotFoundError:
# TODO: Test me @jmcarp
# TODO: Add warning message
logger.error("Could not access GitHub repo")
return None
if repo.private:
return None
try:
branch, sha, branches = get_refs(
node_settings, branch=kwargs.get("branch"), sha=kwargs.get("sha"), connection=connection
)
except (NotFoundError, GitHubError):
# TODO: Show an alert or change GitHub configuration?
logger.error("GitHub repo not found")
return
if branch is not None:
ref = ref_to_params(branch, sha)
can_edit = check_permissions(node_settings, auth, connection, branch, sha, repo=repo)
else:
ref = None
can_edit = False
name_tpl = "{user}/{repo}".format(user=node_settings.user, repo=node_settings.repo)
permissions = {"edit": can_edit, "view": True}
urls = {
"upload": node_settings.owner.api_url + "github/file/" + (ref or ""),
"fetch": node_settings.owner.api_url + "github/hgrid/" + (ref or ""),
"branch": node_settings.owner.api_url + "github/hgrid/root/",
"zip": node_settings.owner.api_url + "github/zipball/" + (ref or ""),
"repo": github_repo_url(owner=node_settings.user, repo=node_settings.repo, branch=branch),
}
branch_names = [each.name for each in branches]
if not branch_names:
branch_names = [branch] # if repo un-init-ed then still add default branch to list of branches
return [
rubeus.build_addon_root(
node_settings, name_tpl, urls=urls, permissions=permissions, branches=branch_names, defaultBranch=branch
)
]