def go(self):
pi = self.progress.indicator
nstates = len(self.state_labels)
if self.interface == 'matplotlib':
with pi:
if 'state_pop_evolution' in self.stateprobs_file:
pi.new_operation('plotting populations', nstates)
for istate in range(nstates):
self.plot_pop(istate)
pi.progress += 1
if 'color_prob_evolution' in self.stateprobs_file:
pi.new_operation('plotting ensemble populations', nstates)
for istate in range(nstates):
self.plot_color(istate)
pi.progress += 1
else:
print('population evolution not available')
else:
plotter = Plotter(self.stateprobs_file,
'state_pop_evolution',
iteration=-1,
interface='text')
for istate in range(nstates):
plotter.plot(istate)
plotter = Plotter(self.stateprobs_file,
'color_prob_evolution',
iteration=-1,
interface='text')
for istate in range(nstates):
plotter.plot(istate)
def go(self):
pi = self.progress.indicator
nstates = len(self.state_labels)
if self.interface == 'matplotlib':
with pi:
if 'state_pop_evolution' in self.stateprobs_file:
pi.new_operation('plotting populations', nstates)
for istate in xrange(nstates):
self.plot_pop(istate)
pi.progress += 1
if 'color_prob_evolution' in self.stateprobs_file:
pi.new_operation('plotting ensemble populations', nstates)
for istate in xrange(nstates):
self.plot_color(istate)
pi.progress += 1
else:
print('population evolution not available')
else:
plotter = Plotter(self.stateprobs_file, 'state_pop_evolution', iteration=-1, interface='text')
for istate in xrange(nstates):
plotter.plot(istate)
plotter = Plotter(self.stateprobs_file, 'color_prob_evolution', iteration=-1, interface='text')
for istate in xrange(nstates):
plotter.plot(istate)
def go(self):
pi = self.progress.indicator
nstates = len(self.state_labels)
if self.interface == 'matplotlib':
with pi:
# if --evolution-mode wasn't specified, neither of these exist:
if 'target_flux_evolution' in self.kinavg_file:
pi.new_operation('plotting fluxes', nstates)
for istate in xrange(nstates):
self.plot_flux(istate)
pi.progress += 1
# if --evolution-mode wasn't specified, we won't get this either
if 'rate_evolution' in self.kinavg_file:
pi.new_operation('plotting rates', nstates*nstates)
for istate in xrange(nstates):
for jstate in xrange(nstates):
self.plot_rate(istate, jstate)
pi.progress += 1
else:
print('rate evolution not available')
else:
plotter = Plotter(self.kinavg_file, 'rate_evolution', iteration=-1, interface='text')
for istate in xrange(nstates):
for jstate in xrange(nstates):
if istate != jstate:
plotter.plot(istate, jstate)
plotter = Plotter(self.kinavg_file, 'conditional_flux_evolution', iteration=-1, interface='text')
for istate in xrange(nstates):
for jstate in xrange(nstates):
if istate != jstate:
plotter.plot(istate, jstate)
def go(self):
pi = self.progress.indicator
nstates = len(self.state_labels)
if self.interface == 'matplotlib':
with pi:
# if --evolution-mode wasn't specified, neither of these exist:
if 'target_flux_evolution' in self.kinavg_file:
pi.new_operation('plotting fluxes', nstates)
for istate in range(nstates):
self.plot_flux(istate)
pi.progress += 1
# if --evolution-mode wasn't specified, we won't get this either
if 'rate_evolution' in self.kinavg_file:
pi.new_operation('plotting rates', nstates * nstates)
for istate in range(nstates):
for jstate in range(nstates):
self.plot_rate(istate, jstate)
pi.progress += 1
else:
print('rate evolution not available')
else:
plotter = Plotter(self.kinavg_file,
'rate_evolution',
iteration=-1,
interface='text')
for istate in range(nstates):
for jstate in range(nstates):
if istate != jstate:
plotter.plot(istate, jstate)
plotter = Plotter(self.kinavg_file,
'conditional_flux_evolution',
iteration=-1,
interface='text')
for istate in range(nstates):
for jstate in range(nstates):
if istate != jstate:
plotter.plot(istate, jstate)