)
parser.add_argument(
"filtfile",
help="Name of this exp",
nargs='?',
default=None
)
args = parser.parse_args()
# ---------------------------------------------------------------------------
# Process argv
# ---------------------------------------------------------------------------
# Replace this with good arg processing....
# basename, dataname, rois, cond, tr, filtfile = process_exp_argv(sys.argv)
data = get_data(args.data)
_, rois = load_roifile(args.roifile) ## roifile
# ---------------------------------------------------------------------------
# Setup exp
# ---------------------------------------------------------------------------
spacetime = SelectSpace(PCA(6, whiten=True), fir, mode="decompose")
exp = DecomposeExp(
spacetime, data, window=args.window, nsig=3, tr=args.tr
)
# ---------------------------------------------------------------------------
# And run each roi
# ---------------------------------------------------------------------------
for n, roi in enumerate(rois):
print("{3}: {0} ({1}/{2})".format(roi, n+1, len(rois), args.data))
from fmrilearn.analysis import fir
from sklearn.decomposition import PCA
from wheelerexp.base import Space
from wheelerexp.base import DecomposeExp
from wheelerexp.common import process_exp_argv
from wheelerdata.load.meta import get_data
# ---------------------------------------------------------------------------
# Process argv
# ---------------------------------------------------------------------------
basename, dataname, rois, cond, tr, filtfile = process_exp_argv(sys.argv)
data = get_data(dataname)
# ---------------------------------------------------------------------------
# Setup exp
# ---------------------------------------------------------------------------
spacetime = Space(PCA(5, whiten=True), fir, mode="decompose")
exp = DecomposeExp(spacetime, data, window=15, nsig=3, tr=tr)
# ---------------------------------------------------------------------------
# And run each roi
# ---------------------------------------------------------------------------
for n, roi in enumerate(rois):
print("{3}: {0} ({1}/{2})".format(roi, n+1, len(rois), dataname))
exp.run(basename, roi, cond, smooth=False, filtfile=filtfile, event=True)