def generate_job(func,category,inputs=None,batch_num=1):
'''
generate_job
Parameters
==========
func: str
name of function to call in plugin functions.py
category: str
must be one of "terms" or "corpus" or "relations" corresponding to output folder
inputs: dict
key should be arg name, and value should be list of string args as input to func
If inputs are not specified, it is assumed that the function will be called once
with no inputs.
batch_num: int
the number of jobs to package into one job. For example, batch_num=100 will run
func with 100 of the input items specified. Each is still written to its own
output file.
'''
# Get name of calling plugin
home = wordfish_home()
cf = inspect.currentframe()
caller = inspect.getouterframes(cf, 2)
tag = os.path.dirname(caller[1][1]).split("/")[-1]
script = "wordfish.plugins.%s.functions" %(tag)
output_dir = ' output_dir="%s/%s/%s"' %(home,category,tag)
# script name to add jobs to
extraction_script = "%s/scripts/run_extractions_%s.job" %(home,tag)
lines_to_add = []
if category in ["corpus","terms","relations"]:
if inputs == None:
lines_to_add.append("python -c 'from %s import %s; %s(%s)'" %(script,func,func,output_dir))
else:
formatted_inputs = ""
# First collect all string args - this means same for all scripts
for varname,elements in inputs.iteritems():
if isinstance(elements,str):
single_input = format_single_input(varname,elements)
formatted_inputs = "%s%s" %(formatted_inputs,single_input)
# Now collect lists, must be equal length
input_lists = dict()
for varname,elements in inputs.iteritems():
if isinstance(elements,list):
if len(input_lists)>0:
if len(input_lists.values()[0]) == len(elements):
input_lists[varname] = elements
else:
input_lists[varname] = elements
# If we have no input lists, just write the job with single args
if len(input_lists) == 0:
formatted_inputs = formatted_inputs.strip(",")
lines_to_add.append("python -c 'from %s import %s; %s(%s,%s)'" %(script,func,func,output_dir,formatted_inputs))
else:
N = len(input_lists.values()[0])
iters = int(numpy.ceil(N/float(batch_num)))
start = 0
for i in range(1,iters+1):
formatted_instance = formatted_inputs
if i==N:
end = N
else:
end = i*batch_num
for varname,elements in input_lists.iteritems():
new_input = format_inputs(varname,elements[start:end])
formatted_instance = "%s%s" %(formatted_instance,new_input)
start = end
formatted_instance.strip(",")
lines_to_add.append("python -c 'from %s import %s; %s(%s,%s)'" %(script,func,func,output_dir,formatted_instance))
# Add lines
add_lines(script=extraction_script,lines_to_add=lines_to_add)
def generate_job(func, category, inputs=None, batch_num=1):
'''
generate_job
Parameters
==========
func: str
name of function to call in plugin functions.py
category: str
must be one of "terms" or "corpus" or "relations" corresponding to output folder
inputs: dict
key should be arg name, and value should be list of string args as input to func
If inputs are not specified, it is assumed that the function will be called once
with no inputs.
batch_num: int
the number of jobs to package into one job. For example, batch_num=100 will run
func with 100 of the input items specified. Each is still written to its own
output file.
'''
# Get name of calling plugin
home = wordfish_home()
cf = inspect.currentframe()
caller = inspect.getouterframes(cf, 2)
tag = os.path.dirname(caller[1][1]).split("/")[-1]
script = "wordfish.plugins.%s.functions" % (tag)
output_dir = ' output_dir="%s/%s/%s"' % (home, category, tag)
# script name to add jobs to
extraction_script = "%s/scripts/run_extractions_%s.job" % (home, tag)
lines_to_add = []
if category in ["corpus", "terms", "relations"]:
if inputs == None:
lines_to_add.append("python -c 'from %s import %s; %s(%s)'" %
(script, func, func, output_dir))
else:
formatted_inputs = ""
# First collect all string args - this means same for all scripts
for varname, elements in inputs.iteritems():
if isinstance(elements, str):
single_input = format_single_input(varname, elements)
formatted_inputs = "%s%s" % (formatted_inputs,
single_input)
# Now collect lists, must be equal length
input_lists = dict()
for varname, elements in inputs.iteritems():
if isinstance(elements, list):
if len(input_lists) > 0:
if len(input_lists.values()[0]) == len(elements):
input_lists[varname] = elements
else:
input_lists[varname] = elements
# If we have no input lists, just write the job with single args
if len(input_lists) == 0:
formatted_inputs = formatted_inputs.strip(",")
lines_to_add.append(
"python -c 'from %s import %s; %s(%s,%s)'" %
(script, func, func, output_dir, formatted_inputs))
else:
N = len(input_lists.values()[0])
iters = int(numpy.ceil(N / float(batch_num)))
start = 0
for i in range(1, iters + 1):
formatted_instance = formatted_inputs
if i == N:
end = N
else:
end = i * batch_num
for varname, elements in input_lists.iteritems():
new_input = format_inputs(varname, elements[start:end])
formatted_instance = "%s%s" % (formatted_instance,
new_input)
start = end
formatted_instance.strip(",")
lines_to_add.append(
"python -c 'from %s import %s; %s(%s,%s)'" %
(script, func, func, output_dir, formatted_instance))
# Add lines
add_lines(script=extraction_script, lines_to_add=lines_to_add)
def go_fish(tag,extraction_script):
line_to_add = "python -c 'from wordfish.plugins.%s.functions import go_fish; go_fish()'" %(tag)
add_lines(script=extraction_script,lines_to_add=[line_to_add])
def go_fish(tag, extraction_script):
line_to_add = "python -c 'from wordfish.plugins.%s.functions import go_fish; go_fish()'" % (
tag)
add_lines(script=extraction_script, lines_to_add=[line_to_add])